Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 117.00100 * 2 1 4 4 C 1.38193 * 120.00418 * 0.23814 * 3 2 1 5 5 C 1.39752 * 119.85390 * 180.18019 * 4 3 2 6 6 C 1.47374 * 120.06490 * 179.81027 * 5 4 3 7 7 N 1.29801 * 120.00167 * 21.79725 * 6 5 4 8 8 N 1.40108 * 119.99957 * 15.68856 * 7 6 5 9 9 C 1.34773 * 120.00351 * 187.68115 * 8 7 6 10 10 O 1.21603 * 120.00143 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99710 * 0.02562 * 9 8 7 12 12 C 1.39922 * 120.00257 * 185.20464 * 11 9 8 13 13 C 1.38879 * 120.06449 * 28.97267 * 12 11 9 14 14 C 1.38115 * 119.92522 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.07252 * 359.97438 * 14 13 12 16 16 C 1.38284 * 120.13768 * 0.04493 * 15 14 13 17 17 C 1.38109 * 120.07554 * 359.95970 * 16 15 14 18 18 C 1.39820 * 119.87161 * 359.54027 * 5 4 3 19 19 C 1.37776 * 120.01088 * 0.26705 * 18 5 4 20 20 C 1.38953 * 120.14601 * 359.96145 * 19 18 5 21 21 O 1.35704 * 119.93437 * 180.02562 * 20 19 18 22 22 C 1.34791 * 117.00014 * 5.55343 * 21 20 19 23 23 H 1.08003 * 120.00092 * 5.07359 * 22 21 20 24 24 C 1.38620 * 120.00087 * 185.07791 * 22 21 20 25 25 N 1.31580 * 119.99765 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99956 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47046 * 90.00028 * 26 24 22 28 28 H 1.48498 * 109.46843 * 209.99983 * 26 24 22 29 29 H 1.48499 * 109.46923 * 330.00403 * 26 24 22 30 30 H 1.09001 * 109.46921 * 299.99847 * 1 2 3 31 31 H 1.09003 * 109.47011 * 60.00148 * 1 2 3 32 32 H 1.08997 * 109.46708 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.07394 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.99673 * 201.79879 * 6 5 4 35 35 H 0.97006 * 119.99672 * 7.67697 * 8 7 6 36 36 H 0.97005 * 120.00016 * 5.19419 * 11 9 8 37 37 H 1.07998 * 120.03595 * 359.70515 * 13 12 11 38 38 H 1.07997 * 119.96269 * 180.02562 * 14 13 12 39 39 H 1.07993 * 119.93104 * 180.02562 * 15 14 13 40 40 H 1.08007 * 119.96524 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.04222 * 180.02562 * 17 16 15 42 42 H 1.07994 * 119.99510 * 180.25036 * 18 5 4 43 43 H 1.08000 * 119.92497 * 179.97438 * 19 18 5 44 44 H 0.97007 * 119.99571 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2937 2.3704 0.0050 5 6 1.9314 3.6139 0.0011 6 6 1.1334 4.8529 0.0022 7 7 -0.0941 4.8340 0.4238 8 7 -0.5605 3.7462 1.1737 9 6 -1.8696 3.6503 1.4794 10 8 -2.2745 2.7060 2.1298 11 7 -2.7301 4.6005 1.0633 12 6 -4.0680 4.5599 1.4711 13 6 -4.4064 3.9896 2.6914 14 6 -5.7278 3.9515 3.0913 15 6 -6.7133 4.4809 2.2785 16 6 -6.3796 5.0490 1.0627 17 6 -5.0601 5.0902 0.6569 18 6 3.3281 3.6803 0.0020 19 6 4.0730 2.5213 0.0011 20 6 3.4396 1.2846 0.0001 21 8 4.1776 0.1458 -0.0003 22 6 5.5134 0.2822 0.1166 23 1 5.9437 1.2580 0.2872 24 6 6.3350 -0.8299 0.0177 25 7 7.6390 -0.6967 0.1323 26 14 5.5908 -2.5178 -0.2767 27 1 5.4938 -2.7680 -1.7372 28 1 6.4522 -3.5542 0.3470 29 1 4.2347 -2.5727 0.3259 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2151 2.3154 0.0084 34 1 1.5700 5.7767 -0.3479 35 1 0.0588 3.0621 1.4727 36 1 -2.4220 5.3127 0.4812 37 1 -3.6376 3.5724 3.3248 38 1 -5.9915 3.5085 4.0403 39 1 -7.7458 4.4502 2.5936 40 1 -7.1516 5.4613 0.4298 41 1 -4.8000 5.5344 -0.2925 42 1 3.8229 4.6402 0.0032 43 1 5.1517 2.5742 0.0014 44 1 8.2139 -1.4750 0.0635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136959858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = 10.818871 kcal Electronic energy + Delta-G solvation = -30174.291716 eV Core-core repulsion = 25866.477799 eV Total energy + Delta-G solvation = -4307.813917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97427 -41.46246 -39.82954 -39.48224 -38.78083 -36.97180 -35.81744 -34.52391 -33.28410 -31.80530 -31.32764 -30.71694 -30.10253 -28.22526 -27.41667 -24.64642 -24.06662 -23.61925 -23.31505 -22.46503 -21.43253 -20.13249 -19.84668 -19.36550 -18.53040 -17.97283 -17.90214 -17.13409 -16.91426 -16.82338 -16.72145 -16.26698 -16.17344 -15.59240 -15.50700 -15.41568 -15.15493 -14.90669 -14.82627 -14.36835 -14.28195 -13.93841 -13.88368 -13.70409 -13.58471 -13.14415 -12.86481 -12.72758 -12.64866 -12.52005 -12.17486 -12.13328 -12.04352 -11.70347 -11.63213 -11.42288 -11.27445 -10.99157 -10.16955 -9.84731 -9.62375 -9.06147 -8.73778 -8.56179 -6.23919 -0.22426 0.34918 0.36475 0.49135 1.11487 1.28355 1.30466 1.43442 1.50249 1.97798 2.24338 2.32756 2.38940 2.69055 2.87667 2.93749 2.99524 3.57570 3.81974 3.98127 4.06699 4.10291 4.12200 4.18621 4.29070 4.34604 4.36777 4.42479 4.53318 4.56060 4.63144 4.64944 4.74547 4.86456 5.09136 5.13345 5.31434 5.33655 5.40685 5.44761 5.54058 5.57750 5.63459 5.66186 5.73382 5.94579 6.11201 6.16723 6.38672 6.78238 6.90991 7.30080 7.51384 8.53910 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.002145 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.460176 B =13050.790890 C =13998.009585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.336 6.336 3 C 0.049 3.951 4 C -0.166 4.166 5 C -0.159 4.159 6 C 0.181 3.819 7 N -0.286 5.286 8 N -0.592 5.592 9 C 0.721 3.279 10 O -0.604 6.604 11 N -0.658 5.658 12 C 0.144 3.856 13 C -0.155 4.155 14 C -0.109 4.109 15 C -0.142 4.142 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.043 4.043 19 C -0.206 4.206 20 C 0.113 3.887 21 O -0.230 6.230 22 C -0.397 4.397 23 H 0.096 0.904 24 C 0.019 3.981 25 N -0.909 5.909 26 Si 0.958 3.042 27 H -0.267 1.267 28 H -0.265 1.265 29 H -0.271 1.271 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.237 0.763 35 H 0.406 0.594 36 H 0.427 0.573 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.175 0.825 43 H 0.133 0.867 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.919 16.202 -1.001 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.251 6.251 3 C 0.004 3.996 4 C -0.187 4.187 5 C -0.163 4.163 6 C -0.028 4.028 7 N -0.093 5.093 8 N -0.343 5.343 9 C 0.423 3.577 10 O -0.481 6.481 11 N -0.306 5.306 12 C 0.049 3.951 13 C -0.176 4.176 14 C -0.127 4.127 15 C -0.161 4.161 16 C -0.116 4.116 17 C -0.172 4.172 18 C -0.064 4.064 19 C -0.225 4.225 20 C 0.062 3.938 21 O -0.136 6.136 22 C -0.473 4.473 23 H 0.114 0.886 24 C -0.181 4.181 25 N -0.549 5.549 26 Si 0.781 3.219 27 H -0.192 1.192 28 H -0.190 1.190 29 H -0.195 1.195 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.253 0.747 35 H 0.253 0.747 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.192 0.808 43 H 0.151 0.849 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.985 15.517 -0.476 29.415 hybrid contribution 1.581 -1.611 -0.099 2.259 sum -23.404 13.906 -0.575 27.229 Atomic orbital electron populations 1.23193 0.77259 1.05219 1.01210 1.86157 1.22419 1.26796 1.89721 1.18312 0.88947 0.85759 1.06596 1.21487 0.99783 0.91203 1.06252 1.19238 0.94274 0.92424 1.10382 1.25857 0.87474 0.97301 0.92137 1.74715 1.15570 1.08909 1.10109 1.47020 1.07306 1.26921 1.53006 1.15698 0.80321 0.82334 0.79396 1.90978 1.76131 1.35038 1.45993 1.42449 1.07088 1.28915 1.52144 1.17882 0.82831 1.00539 0.93873 1.21313 0.98063 1.02467 0.95762 1.21282 0.91880 0.98922 1.00655 1.21480 1.00300 0.99232 0.95060 1.21338 0.95625 0.98019 0.96602 1.21124 0.92250 1.03934 0.99857 1.21338 0.91918 0.98441 0.94660 1.21212 1.01349 0.91135 1.08818 1.19237 0.88710 0.87627 0.98266 1.83604 1.19642 1.28891 1.81485 1.20812 0.78069 0.97944 1.50443 0.88638 1.25125 0.94806 1.02447 0.95740 1.69708 1.03265 1.33111 1.48817 0.85387 0.78735 0.78508 0.79230 1.19178 1.18957 1.19549 0.93015 0.92207 0.86534 0.83718 0.74666 0.74697 0.73367 0.86792 0.84683 0.83442 0.82634 0.83581 0.80807 0.84926 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.81 113.37 1.11 1.87 16 2 O -0.34 -13.68 10.28 -79.05 -0.81 -14.49 16 3 C 0.05 1.96 6.70 22.57 0.15 2.11 16 4 C -0.17 -5.12 6.71 22.63 0.15 -4.97 16 5 C -0.16 -3.94 5.58 -20.12 -0.11 -4.06 16 6 C 0.18 2.92 11.21 87.40 0.98 3.90 16 7 N -0.29 -5.50 10.41 -52.22 -0.54 -6.04 16 8 N -0.59 -14.80 4.51 -184.74 -0.83 -15.64 16 9 C 0.72 19.92 8.45 179.06 1.51 21.43 16 10 O -0.60 -20.69 14.57 -4.04 -0.06 -20.75 16 11 N -0.66 -14.40 5.31 -317.17 -1.69 -16.09 16 12 C 0.14 3.16 6.36 38.15 0.24 3.41 16 13 C -0.16 -3.80 8.69 22.39 0.19 -3.61 16 14 C -0.11 -2.05 10.04 22.25 0.22 -1.83 16 15 C -0.14 -2.03 10.04 22.29 0.22 -1.80 16 16 C -0.10 -1.28 10.04 22.25 0.22 -1.05 16 17 C -0.15 -2.41 9.95 22.39 0.22 -2.18 16 18 C -0.04 -1.14 9.78 22.54 0.22 -0.92 16 19 C -0.21 -7.79 9.11 22.33 0.20 -7.59 16 20 C 0.11 5.12 6.67 22.75 0.15 5.27 16 21 O -0.23 -12.43 8.36 -7.86 -0.07 -12.50 16 22 C -0.40 -22.42 9.90 67.91 0.67 -21.74 16 23 H 0.10 5.42 5.50 -2.91 -0.02 5.41 16 24 C 0.02 1.08 5.49 84.82 0.47 1.54 16 25 N -0.91 -52.36 13.96 21.61 0.30 -52.06 16 26 Si 0.96 45.76 28.62 68.60 1.96 47.72 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 30 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 31 H 0.06 1.57 7.67 -2.39 -0.02 1.56 16 32 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.15 4.14 3.92 -2.91 -0.01 4.13 16 34 H 0.24 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.41 11.29 5.60 -213.31 -1.20 10.09 16 36 H 0.43 7.32 7.85 -92.70 -0.73 6.59 16 37 H 0.11 3.35 6.07 -2.91 -0.02 3.33 16 38 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.13 5.39 5.68 -2.91 -0.02 5.37 16 44 H 0.29 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -74.47 376.63 4.27 -70.19 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.83 Total: 29.88 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.84 Total: -10.23 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -2.76 Total: -89.83 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.94 Total: -47.74 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.72 kcal Total: -74.47 4.27 -70.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.011 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds