Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99991 * 2 1 4 4 O 1.20817 * 119.99843 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99970 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.46894 * 186.50415 * 5 3 2 7 7 H 1.08994 * 109.47986 * 306.78727 * 6 5 3 8 8 N 1.46510 * 109.46971 * 186.78545 * 6 5 3 9 9 C 1.34774 * 119.99861 * 88.91517 * 8 6 5 10 10 O 1.21686 * 119.99922 * 355.08627 * 9 8 6 11 11 C 1.46374 * 119.99829 * 175.08254 * 9 8 6 12 12 H 1.08003 * 119.99932 * 359.97438 * 11 9 8 13 13 C 1.40047 * 119.99800 * 180.02562 * 11 9 8 14 14 N 1.30664 * 120.00310 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99857 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47412 * 89.99539 * 15 13 11 17 17 H 1.48500 * 109.47107 * 209.99362 * 15 13 11 18 18 H 1.48507 * 109.47331 * 329.99572 * 15 13 11 19 19 C 1.50700 * 109.46888 * 66.78943 * 6 5 3 20 20 C 1.38239 * 119.99078 * 259.99637 * 19 6 5 21 21 C 1.38213 * 120.01498 * 179.97438 * 20 19 6 22 22 C 1.38328 * 119.98745 * 0.30153 * 21 20 19 23 23 Br 1.89101 * 120.00934 * 179.72464 * 22 21 20 24 24 C 1.38330 * 119.97850 * 359.46067 * 22 21 20 25 25 C 1.38217 * 119.98757 * 0.51939 * 24 22 21 26 26 H 1.09001 * 109.46773 * 300.00056 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.00016 * 1 2 3 28 28 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46632 * 66.50808 * 5 3 2 30 30 H 1.09001 * 109.47468 * 306.51144 * 5 3 2 31 31 H 0.96999 * 119.99801 * 268.91552 * 8 6 5 32 32 H 0.96996 * 120.00593 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.99096 * 359.97438 * 20 19 6 34 34 H 1.08000 * 120.00830 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.00286 * 180.25786 * 24 22 21 36 36 H 1.07999 * 119.99119 * 179.76220 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0005 2.7328 0.1639 7 1 3.5091 3.3453 -0.5921 8 7 5.4534 2.8307 0.0026 9 6 5.9841 3.0235 -1.2211 10 8 5.2648 3.0270 -2.2026 11 6 7.4258 3.2288 -1.3695 12 1 8.0641 3.2262 -0.4984 13 6 7.9772 3.4298 -2.6411 14 7 7.2048 3.4334 -3.6951 15 14 9.8171 3.6911 -2.8306 16 1 10.4865 2.3792 -3.0201 17 1 10.0755 4.5537 -4.0114 18 1 10.3520 4.3481 -1.6110 19 6 3.6133 3.2216 1.5358 20 6 2.4756 3.9894 1.7002 21 6 2.1198 4.4375 2.9584 22 6 2.9057 4.1227 4.0523 23 35 2.4236 4.7419 5.7728 24 6 4.0414 3.3502 3.8881 25 6 4.3962 2.9023 2.6295 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.9509 0.8846 -0.9417 30 1 3.9609 0.6835 0.8268 31 1 6.0333 2.7567 0.7766 32 1 7.5867 3.5722 -4.5758 33 1 1.8647 4.2393 0.8453 34 1 1.2307 5.0370 3.0867 35 1 4.6530 3.1007 4.7425 36 1 5.2849 2.3024 2.5007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153536736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = -98.421824 kcal Electronic energy + Delta-G solvation = -23111.753140 eV Core-core repulsion = 19414.215811 eV Total energy + Delta-G solvation = -3697.537330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51909 -39.34863 -37.46260 -36.35614 -34.54619 -32.54136 -31.78104 -31.02537 -30.50822 -29.06343 -27.44665 -26.28938 -23.88048 -22.82289 -21.45251 -20.45041 -19.33157 -17.81002 -17.45645 -16.70115 -16.42190 -16.03771 -15.47966 -15.08463 -15.03920 -14.32611 -13.98148 -13.82048 -13.62743 -13.37621 -13.10400 -12.82609 -12.70271 -12.22315 -12.09169 -11.96274 -11.51037 -11.33317 -11.08806 -10.98291 -10.75350 -10.68816 -10.64088 -10.52430 -10.35751 -10.28283 -10.18865 -8.93939 -8.92476 -8.54294 -7.78535 -7.72379 -6.26496 -4.72748 1.12068 1.39332 1.59170 2.42257 2.84188 3.10553 3.18144 3.21164 3.66974 4.05252 4.48986 4.63240 4.81048 4.84452 4.94710 5.08765 5.09930 5.16984 5.34594 5.43026 5.47541 5.51783 5.55283 5.74594 5.81496 5.97404 6.03846 6.23542 6.28960 6.36453 6.52727 6.73480 6.90662 7.36569 7.76603 7.89761 7.95864 8.22563 8.94996 9.37475 10.49632 10.67535 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.003316 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.649547 B = 8442.753439 C =10760.931608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.121 4.121 6 C 0.204 3.796 7 H 0.102 0.898 8 N -0.757 5.757 9 C 0.554 3.446 10 O -0.576 6.576 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.765 5.765 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.067 4.067 20 C -0.080 4.080 21 C -0.097 4.097 22 C -0.094 4.094 23 Br -0.066 7.066 24 C -0.096 4.096 25 C -0.107 4.107 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.382 0.618 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -2.801 16.461 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.161 4.161 6 C 0.097 3.903 7 H 0.120 0.880 8 N -0.412 5.412 9 C 0.359 3.641 10 O -0.458 6.458 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.068 4.068 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.173 4.173 23 Br 0.020 6.980 24 C -0.115 4.115 25 C -0.126 4.126 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.216 0.784 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.068 -2.217 16.151 19.705 hybrid contribution 1.047 -0.052 -0.061 1.050 sum -10.021 -2.269 16.090 19.091 Atomic orbital electron populations 1.23195 0.76959 1.03249 1.02397 1.86530 1.23023 1.34057 1.84416 1.23892 0.92232 0.81114 0.71776 1.90600 1.67290 1.36047 1.45205 1.22015 0.86706 1.00916 1.06430 1.19163 0.85732 0.92519 0.92879 0.88003 1.46331 1.02890 1.80842 1.11173 1.18286 0.89232 0.76449 0.80178 1.90622 1.62333 1.55606 1.37245 1.20858 0.91003 1.52490 0.93600 0.91299 1.25695 0.99309 0.92775 0.95425 1.70001 1.35868 1.34672 0.98815 0.86366 0.83042 0.78785 0.78555 1.19703 1.20443 1.18871 1.20334 0.94670 0.96319 0.95522 1.21262 0.96016 0.95544 0.97078 1.21087 0.99225 0.99845 0.91536 1.21727 0.99917 1.04668 0.90966 1.96656 1.92729 1.88184 1.20473 1.21005 0.95406 0.97148 0.97974 1.21028 0.99824 1.00270 0.91457 0.92136 0.91962 0.88513 0.86176 0.88259 0.78446 0.91988 0.84048 0.85340 0.85213 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.10 10.57 -39.27 -0.41 -5.51 16 3 C 0.47 7.38 7.65 36.01 0.28 7.66 16 4 O -0.50 -8.64 12.61 -18.74 -0.24 -8.87 16 5 C -0.12 -1.95 5.58 -27.88 -0.16 -2.11 16 6 C 0.20 3.70 1.98 -69.08 -0.14 3.56 16 7 H 0.10 2.19 7.04 -51.93 -0.37 1.83 16 8 N -0.76 -15.44 4.99 -56.34 -0.28 -15.72 16 9 C 0.55 14.71 7.73 -12.99 -0.10 14.61 16 10 O -0.58 -17.53 14.67 5.20 0.08 -17.46 16 11 C -0.54 -14.55 9.54 -35.63 -0.34 -14.89 16 12 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 13 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 14 N -0.77 -22.14 11.83 55.55 0.66 -21.48 16 15 Si 0.91 19.46 29.56 -169.99 -5.02 14.44 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.07 -1.04 4.51 -104.62 -0.47 -1.51 16 20 C -0.08 -1.20 8.16 -39.59 -0.32 -1.52 16 21 C -0.10 -1.29 9.79 -39.56 -0.39 -1.68 16 22 C -0.09 -1.20 6.22 -39.51 -0.25 -1.44 16 23 Br -0.07 -0.73 33.70 -68.01 -2.29 -3.02 16 24 C -0.10 -1.18 9.79 -39.56 -0.39 -1.57 16 25 C -0.11 -1.43 9.08 -39.59 -0.36 -1.78 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 30 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 31 H 0.38 6.78 6.87 -40.82 -0.28 6.50 16 32 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 33 H 0.14 2.21 6.86 -52.48 -0.36 1.85 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 1.56 6.87 -52.49 -0.36 1.20 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -32.67 335.89 -7.98 -40.66 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.87 Total: 8.87 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.66 Total: 3.04 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.38 Total: -37.20 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.58 Total: -31.85 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.67 -7.98 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153536736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.763 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds