Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00224 * 2 1 4 4 O 1.20828 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00362 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47480 * 173.27836 * 5 3 2 7 7 H 1.09002 * 109.46829 * 53.40643 * 6 5 3 8 8 N 1.46496 * 109.47334 * 173.40729 * 6 5 3 9 9 C 1.34772 * 120.00209 * 274.09200 * 8 6 5 10 10 O 1.21687 * 120.00124 * 354.99958 * 9 8 6 11 11 C 1.46376 * 120.00258 * 175.00393 * 9 8 6 12 12 H 1.08000 * 119.99634 * 359.97438 * 11 9 8 13 13 C 1.40050 * 120.00198 * 179.97438 * 11 9 8 14 14 N 1.30667 * 120.00032 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99991 * 180.02562 * 13 11 9 16 16 H 1.48490 * 109.47711 * 89.99679 * 15 13 11 17 17 H 1.48500 * 109.46909 * 210.00075 * 15 13 11 18 18 H 1.48508 * 109.46923 * 329.99386 * 15 13 11 19 19 C 1.50699 * 109.47055 * 293.41249 * 6 5 3 20 20 C 1.38235 * 119.99359 * 100.00130 * 19 6 5 21 21 C 1.38220 * 120.01058 * 179.97438 * 20 19 6 22 22 C 1.38323 * 119.98813 * 0.02562 * 21 20 19 23 23 Br 1.89106 * 120.00648 * 180.02562 * 22 21 20 24 24 C 1.38316 * 119.98091 * 359.97438 * 22 21 20 25 25 C 1.38216 * 119.99349 * 0.02562 * 24 22 21 26 26 H 1.09004 * 109.47131 * 59.99344 * 1 2 3 27 27 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46991 * 299.99825 * 1 2 3 29 29 H 1.08999 * 109.46876 * 53.27762 * 5 3 2 30 30 H 1.09002 * 109.46766 * 293.28323 * 5 3 2 31 31 H 0.97003 * 120.00283 * 94.08343 * 8 6 5 32 32 H 0.97000 * 120.00325 * 179.97438 * 14 13 11 33 33 H 1.08005 * 119.99173 * 0.24982 * 20 19 6 34 34 H 1.07997 * 120.00133 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.00284 * 179.97438 * 24 22 21 36 36 H 1.08001 * 119.99483 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0007 2.7322 -0.1693 7 1 3.5116 3.3468 0.5865 8 7 5.4539 2.8299 -0.0127 9 6 5.9918 2.9652 1.2156 10 8 5.2687 3.0977 2.1853 11 6 7.4459 2.9530 1.3833 12 1 8.0877 2.8351 0.5227 13 6 8.0048 3.0941 2.6596 14 7 7.2283 3.2373 3.7007 15 14 9.8605 3.0792 2.8735 16 1 10.3828 4.4648 2.7631 17 1 10.2003 2.5271 4.2095 18 1 10.4736 2.2335 1.8179 19 6 3.6094 3.2173 -1.5414 20 6 2.4715 3.9851 -1.7044 21 6 2.1126 4.4307 -2.9626 22 6 2.8920 4.1077 -4.0588 23 35 2.4018 4.7177 -5.7804 24 6 4.0304 3.3394 -3.8952 25 6 4.3886 2.8942 -2.6367 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9610 0.6804 -0.8246 30 1 3.9508 0.8880 0.9432 31 1 6.0292 2.7971 -0.7931 32 1 7.6154 3.3347 4.5848 33 1 1.8653 4.2406 -0.8478 34 1 1.2239 5.0310 -3.0898 35 1 4.6390 3.0866 -4.7509 36 1 5.2777 2.2946 -2.5088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153536830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -98.361182 kcal Electronic energy + Delta-G solvation = -23114.810013 eV Core-core repulsion = 19417.275313 eV Total energy + Delta-G solvation = -3697.534700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52000 -39.35292 -37.46471 -36.35463 -34.54636 -32.54280 -31.78613 -31.02979 -30.50129 -29.07087 -27.44384 -26.29999 -23.88107 -22.82623 -21.45266 -20.46586 -19.30009 -17.81318 -17.46208 -16.70572 -16.42216 -16.03895 -15.48297 -15.08602 -15.04102 -14.32102 -13.98420 -13.83689 -13.61954 -13.37654 -13.10824 -12.82116 -12.64925 -12.25452 -12.13431 -11.96239 -11.51177 -11.33698 -11.08438 -10.98476 -10.75357 -10.68749 -10.64285 -10.52471 -10.36087 -10.28514 -10.19138 -8.94360 -8.92754 -8.55183 -7.79699 -7.69818 -6.26598 -4.73057 1.11460 1.38764 1.58661 2.42161 2.84060 3.10576 3.17960 3.20691 3.66507 4.05020 4.48884 4.63290 4.80674 4.84335 4.94253 5.08641 5.09976 5.17069 5.34506 5.42806 5.47908 5.51538 5.55236 5.74095 5.81655 5.97288 6.02718 6.23215 6.29298 6.36150 6.52650 6.73597 6.90244 7.36315 7.76722 7.89742 7.95965 8.22340 8.94747 9.37546 10.49616 10.67495 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.003250 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.660311 B = 8612.262587 C =10794.196231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.121 4.121 6 C 0.203 3.797 7 H 0.102 0.898 8 N -0.757 5.757 9 C 0.554 3.446 10 O -0.576 6.576 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.765 5.765 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.067 4.067 20 C -0.079 4.079 21 C -0.097 4.097 22 C -0.093 4.093 23 Br -0.065 7.065 24 C -0.095 4.095 25 C -0.107 4.107 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.383 0.617 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -2.621 -16.474 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.161 4.161 6 C 0.096 3.904 7 H 0.120 0.880 8 N -0.413 5.413 9 C 0.358 3.642 10 O -0.458 6.458 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.393 5.393 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.068 4.068 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.173 4.173 23 Br 0.020 6.980 24 C -0.115 4.115 25 C -0.126 4.126 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.216 0.784 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.147 -1.978 -16.170 19.739 hybrid contribution 1.056 -0.165 0.073 1.071 sum -10.091 -2.143 -16.098 19.119 Atomic orbital electron populations 1.23196 0.76950 1.03255 1.02397 1.86529 1.23027 1.34045 1.84406 1.23882 0.92221 0.81119 0.71784 1.90603 1.67292 1.36039 1.45206 1.22000 0.86710 1.00910 1.06441 1.19153 0.85786 0.92516 0.92924 0.88000 1.46327 1.02908 1.81665 1.10387 1.18289 0.89393 0.76373 0.80110 1.90623 1.62622 1.54201 1.38353 1.20861 0.89875 1.53411 0.93826 0.91294 1.25699 0.99438 0.92600 0.95481 1.70005 1.35939 1.34281 0.99119 0.86364 0.83093 0.79042 0.78236 1.19719 1.20441 1.18861 1.20313 0.94692 0.96343 0.95477 1.21263 0.95977 0.95535 0.97093 1.21089 0.99287 0.99813 0.91513 1.21726 0.99890 1.04723 0.90931 1.96657 1.92520 1.88483 1.20374 1.21004 0.95347 0.97195 0.97986 1.21043 0.99896 1.00236 0.91450 0.92141 0.88507 0.91954 0.88206 0.86243 0.78416 0.91986 0.84043 0.85333 0.85203 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.11 10.57 -39.25 -0.41 -5.52 16 3 C 0.47 7.40 7.64 36.00 0.28 7.67 16 4 O -0.50 -8.64 12.62 -18.75 -0.24 -8.88 16 5 C -0.12 -1.96 5.56 -27.89 -0.15 -2.11 16 6 C 0.20 3.69 2.02 -69.09 -0.14 3.55 16 7 H 0.10 2.20 7.00 -51.93 -0.36 1.83 16 8 N -0.76 -15.46 5.01 -56.35 -0.28 -15.75 16 9 C 0.55 14.70 7.72 -12.99 -0.10 14.60 16 10 O -0.58 -17.58 14.64 5.20 0.08 -17.50 16 11 C -0.54 -14.52 9.54 -35.63 -0.34 -14.86 16 12 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 13 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 14 N -0.77 -22.12 11.83 55.55 0.66 -21.47 16 15 Si 0.91 19.42 29.56 -169.99 -5.02 14.39 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.07 -1.04 4.51 -104.62 -0.47 -1.51 16 20 C -0.08 -1.19 8.15 -39.59 -0.32 -1.51 16 21 C -0.10 -1.29 9.79 -39.56 -0.39 -1.68 16 22 C -0.09 -1.19 6.22 -39.52 -0.25 -1.44 16 23 Br -0.07 -0.73 33.70 -68.01 -2.29 -3.02 16 24 C -0.10 -1.18 9.79 -39.56 -0.39 -1.57 16 25 C -0.11 -1.43 9.05 -39.59 -0.36 -1.79 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.10 1.36 8.12 -51.93 -0.42 0.94 16 30 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 31 H 0.38 6.80 6.85 -40.82 -0.28 6.52 16 32 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 33 H 0.14 2.20 6.87 -52.48 -0.36 1.84 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.13 1.57 6.90 -52.49 -0.36 1.21 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -32.67 335.83 -7.99 -40.66 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -3.87 Total: 8.95 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.66 Total: 3.07 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.37 Total: -37.21 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.58 Total: -31.90 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.67 -7.99 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153536830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.703 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds