Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86795 * 120.00333 * 2 1 4 4 H 1.48506 * 109.46740 * 269.99996 * 3 2 1 5 5 H 1.48497 * 109.47182 * 29.99349 * 3 2 1 6 6 H 1.48500 * 109.47478 * 149.99833 * 3 2 1 7 7 C 1.38837 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.37063 * 120.00253 * 0.02562 * 7 2 1 10 10 N 1.39703 * 126.50273 * 359.97438 * 9 7 2 11 11 C 1.32239 * 108.60971 * 180.02562 * 10 9 7 12 12 N 1.34184 * 107.19865 * 0.15667 * 11 10 9 13 13 C 1.34786 * 126.50389 * 179.97438 * 9 7 2 14 14 O 1.21725 * 126.66173 * 359.76138 * 13 9 7 15 15 C 1.46811 * 125.30904 * 179.55098 * 12 11 10 16 16 C 1.52924 * 110.63193 * 1.07301 * 15 12 11 17 17 N 1.45434 * 105.14532 * 60.39732 * 16 15 12 18 18 S 1.65605 * 119.02605 * 77.08593 * 17 16 15 19 19 O 1.42097 * 106.39914 * 203.53600 * 18 17 16 20 20 O 1.42090 * 106.40490 * 336.45854 * 18 17 16 21 21 C 1.76201 * 107.21615 * 90.00186 * 18 17 16 22 22 C 1.34667 * 125.98888 * 269.71225 * 21 18 17 23 23 N 1.36888 * 106.81806 * 179.84820 * 22 21 18 24 24 H 0.96999 * 126.39672 * 180.18580 * 23 22 21 25 25 C 1.35040 * 107.20110 * 0.41525 * 23 22 21 26 26 N 1.30495 * 108.70490 * 359.74061 * 25 23 22 27 27 C 1.49306 * 122.10681 * 257.23423 * 17 16 15 28 28 C 1.50625 * 119.15869 * 180.36120 * 11 10 9 29 29 H 0.96999 * 119.99758 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.24596 * 240.77470 * 15 12 11 31 31 H 1.09010 * 109.21276 * 121.34958 * 15 12 11 32 32 H 1.09002 * 110.32699 * 179.34929 * 16 15 12 33 33 H 1.08994 * 110.32556 * 301.45031 * 16 15 12 34 34 H 1.08003 * 126.59312 * 359.96683 * 22 21 18 35 35 H 1.08001 * 125.64519 * 179.76439 * 25 23 22 36 36 H 1.09000 * 110.31091 * 268.60135 * 27 17 16 37 37 H 1.08997 * 110.67799 * 146.15675 * 27 17 16 38 38 H 1.09001 * 109.30999 * 240.94092 * 28 11 10 39 39 H 1.09004 * 109.30636 * 0.33931 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4959 2.0462 -1.4002 5 1 1.4459 2.6526 0.6999 6 1 3.5459 1.4401 0.7001 7 6 2.0084 -1.2024 0.0005 8 1 3.0884 -1.2025 0.0001 9 7 1.3230 -2.3894 0.0005 10 7 -0.0650 -2.5475 0.0005 11 6 -0.3424 -3.8405 0.0011 12 7 0.8276 -4.4973 0.0050 13 6 1.8603 -3.6255 0.0005 14 8 3.0456 -3.9028 -0.0035 15 6 0.9811 -5.9574 0.0162 16 6 -0.3857 -6.6430 -0.0037 17 7 -1.0147 -6.2007 -1.2381 18 16 -0.5382 -6.8804 -2.6711 19 8 -0.8599 -5.9408 -3.6873 20 8 0.7756 -7.3793 -2.4614 21 6 -1.5653 -8.2849 -2.9491 22 6 -1.3110 -9.5438 -2.5441 23 7 -2.3615 -10.3146 -2.9637 24 1 -2.4693 -11.2679 -2.8204 25 6 -3.2172 -9.5010 -3.6189 26 7 -2.7346 -8.2886 -3.6062 27 6 -2.0753 -5.1500 -1.2561 28 6 -1.7825 -4.2821 -0.0071 29 1 -0.4850 0.8401 -0.0004 30 1 1.5193 -6.2551 0.9160 31 1 1.5502 -6.2650 -0.8611 32 1 -0.2658 -7.7264 -0.0068 33 1 -0.9783 -6.3310 0.8562 34 1 -0.4456 -9.8803 -1.9925 35 1 -4.1472 -9.8035 -4.0772 36 1 -3.0619 -5.6070 -1.1789 37 1 -2.0057 -4.5483 -2.1622 38 1 -1.9862 -4.8639 0.8919 39 1 -2.4286 -3.4043 -0.0187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169790122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = 71.137599 kcal Electronic energy + Delta-G solvation = -30343.787028 eV Core-core repulsion = 26032.377903 eV Total energy + Delta-G solvation = -4311.409125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.51243 -41.21346 -37.63832 -37.15018 -35.70960 -35.52793 -34.13625 -33.11907 -32.70712 -31.38316 -30.22861 -28.47960 -28.39795 -24.94527 -24.06230 -22.90299 -22.38492 -21.95282 -20.90809 -19.69404 -19.49550 -18.50401 -17.62595 -17.48502 -16.69717 -16.14386 -15.57469 -15.55551 -15.29328 -15.08521 -14.79145 -14.50537 -14.37714 -14.32541 -14.16422 -13.86097 -13.12121 -13.05782 -12.59723 -12.47049 -11.98482 -11.84432 -11.69607 -11.58975 -11.58217 -11.48109 -11.22640 -11.12881 -10.80046 -10.58778 -10.58232 -10.47621 -10.36850 -9.88857 -9.67135 -9.43744 -9.11808 -8.63775 -8.44310 -7.14064 -6.28163 -3.93327 0.38932 1.22532 2.25197 2.54087 3.00059 3.15839 3.19435 3.27261 3.33988 3.41951 3.82686 3.98674 4.10030 4.15508 4.44807 4.52606 4.53528 4.65557 4.84635 4.93037 5.15051 5.21308 5.24984 5.29190 5.41237 5.55172 5.58265 5.74173 5.77914 5.97122 6.01781 6.11955 6.28488 6.48546 6.69855 6.72740 7.12664 7.33031 7.40723 7.79760 8.16714 8.68587 9.08713 9.52674 9.94323 10.72752 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.003154 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.557303 B = 8874.707686 C = 9209.566043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.306 4.306 8 H 0.117 0.883 9 N -0.242 5.242 10 N -0.215 5.215 11 C 0.136 3.864 12 N -0.517 5.517 13 C 0.562 3.438 14 O -0.607 6.607 15 C 0.090 3.910 16 C 0.118 3.882 17 N -0.996 5.996 18 S 2.714 3.286 19 O -0.936 6.936 20 O -0.952 6.952 21 C -0.558 4.558 22 C 0.067 3.933 23 N -0.564 5.564 24 H 0.426 0.574 25 C 0.185 3.815 26 N -0.413 5.413 27 C 0.123 3.877 28 C -0.018 4.018 29 H 0.268 0.732 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.197 0.803 35 H 0.218 0.782 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.452 -22.469 -1.324 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.168 4.168 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.435 4.435 8 H 0.135 0.865 9 N -0.047 5.047 10 N -0.047 5.047 11 C -0.136 4.136 12 N -0.244 5.244 13 C 0.266 3.734 14 O -0.489 6.489 15 C -0.036 4.036 16 C -0.008 4.008 17 N -0.837 5.837 18 S 2.800 3.200 19 O -0.926 6.926 20 O -0.941 6.941 21 C -0.768 4.768 22 C -0.075 4.075 23 N -0.165 5.165 24 H 0.265 0.735 25 C -0.103 4.103 26 N -0.131 5.131 27 C -0.002 4.002 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.214 0.786 35 H 0.234 0.766 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.939 -20.480 -2.221 23.809 hybrid contribution 0.383 -1.865 0.551 1.982 sum -11.556 -22.345 -1.670 25.212 Atomic orbital electron populations 1.70181 1.05613 1.27152 1.41094 1.25437 0.95785 0.99530 0.96058 0.85848 0.79341 0.80306 0.78727 1.19906 1.20478 1.19080 1.19561 0.91553 0.79191 1.53244 0.86532 1.44515 1.02222 1.04676 1.53239 1.78706 0.94373 1.11051 1.20537 1.23193 0.89718 0.89322 1.11331 1.44603 1.06282 1.06801 1.66720 1.16644 0.84727 0.81803 0.90227 1.90838 1.12027 1.80664 1.65342 1.22227 0.97889 0.78462 1.04995 1.21506 0.92470 0.98547 0.88241 1.57945 1.52824 1.50901 1.22014 1.01695 0.72878 0.72634 0.72804 1.93581 1.84447 1.59207 1.55357 1.93579 1.33058 1.81903 1.85593 1.33841 1.11048 1.16316 1.15559 1.22857 0.93499 0.90677 1.00496 1.43700 1.17791 1.12442 1.42567 0.73503 1.25488 0.98369 0.86113 1.00282 1.70365 1.06736 1.20486 1.15486 1.22646 0.88862 0.87610 1.01034 1.20328 0.87974 1.00514 0.97092 0.92167 0.90046 0.88262 0.88776 0.87771 0.78590 0.76560 0.90022 0.87767 0.90232 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.84 11.85 55.49 0.66 -22.18 16 2 C 0.04 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -9.11 10.14 -14.99 -0.15 -9.27 16 8 H 0.12 3.44 7.83 -52.49 -0.41 3.03 16 9 N -0.24 -7.13 3.68 -15.26 -0.06 -7.19 16 10 N -0.22 -5.75 10.33 32.81 0.34 -5.41 16 11 C 0.14 2.91 6.93 -154.76 -1.07 1.83 16 12 N -0.52 -11.61 3.02 -117.94 -0.36 -11.97 16 13 C 0.56 15.88 8.55 -86.57 -0.74 15.14 16 14 O -0.61 -18.53 17.72 5.17 0.09 -18.44 16 15 C 0.09 1.52 6.30 -3.91 -0.02 1.50 16 16 C 0.12 1.33 5.60 -4.65 -0.03 1.30 16 17 N -1.00 -13.17 2.70 -111.97 -0.30 -13.47 16 18 S 2.71 40.71 5.72 -107.50 -0.61 40.09 16 19 O -0.94 -18.03 16.63 -57.18 -0.95 -18.98 16 20 O -0.95 -15.47 14.87 -57.18 -0.85 -16.32 16 21 C -0.56 -6.52 7.13 -17.81 -0.13 -6.65 16 22 C 0.07 0.51 11.76 -16.56 -0.19 0.32 16 23 N -0.56 -2.75 6.15 -14.03 -0.09 -2.84 16 24 H 0.43 0.25 8.96 -40.82 -0.37 -0.12 16 25 C 0.18 1.30 13.04 -90.38 -1.18 0.12 16 26 N -0.41 -4.95 11.25 -13.86 -0.16 -5.10 16 27 C 0.12 1.58 6.85 -1.49 -0.01 1.57 16 28 C -0.02 -0.26 5.49 -26.92 -0.15 -0.41 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.86 5.81 -51.92 -0.30 1.56 16 32 H 0.09 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.10 0.97 6.01 -51.93 -0.31 0.66 16 34 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.58 7.15 -51.93 -0.37 1.21 16 38 H 0.08 0.89 6.56 -51.93 -0.34 0.55 16 39 H 0.11 1.58 8.09 -51.93 -0.42 1.16 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -44.59 341.36 -9.71 -54.30 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.77 Total: -0.10 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -3.77 Total: 6.55 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.04 Total: -68.16 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -1.71 Total: -53.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 40.71 SS G_CDS: -0.61 Total: 40.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -44.59 -9.71 -54.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169790122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.433 kcal (2) G-P(sol) polarization free energy of solvation -44.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds