Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35037 * 126.39488 * 300.02763 * 4 2 1 6 6 N 1.30506 * 108.69837 * 179.97438 * 5 4 2 7 7 C 1.34124 * 109.25476 * 0.02562 * 6 5 4 8 8 S 1.76207 * 125.99033 * 179.97438 * 7 6 5 9 9 O 1.42095 * 106.40321 * 203.56306 * 8 7 6 10 10 O 1.42098 * 106.39702 * 336.48614 * 8 7 6 11 11 N 1.65607 * 107.21563 * 90.02448 * 8 7 6 12 12 C 1.46506 * 119.99702 * 269.99978 * 11 8 7 13 13 C 1.50703 * 109.47078 * 95.00434 * 12 11 8 14 14 H 1.08003 * 119.99427 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99583 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00190 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46966 * 59.99951 * 17 15 13 19 19 H 1.48499 * 109.47279 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46977 * 300.00071 * 17 15 13 21 21 C 1.46493 * 119.99915 * 90.00245 * 11 8 7 22 22 C 1.52999 * 109.47243 * 95.00047 * 21 11 8 23 23 F 1.39903 * 109.47367 * 59.99413 * 22 21 11 24 24 F 1.39893 * 109.47492 * 179.97438 * 22 21 11 25 25 F 1.39905 * 109.46819 * 299.99984 * 22 21 11 26 26 C 1.34674 * 108.02190 * 359.73157 * 7 6 5 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.07994 * 125.65602 * 0.03315 * 5 4 2 35 35 H 1.08999 * 109.46892 * 215.00095 * 12 11 8 36 36 H 1.08998 * 109.47251 * 335.00335 * 12 11 8 37 37 H 0.97003 * 119.99765 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46917 * 214.99530 * 21 11 8 39 39 H 1.08999 * 109.47663 * 334.99698 * 21 11 8 40 40 H 1.08005 * 126.59211 * 180.28258 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7727 -0.3440 2.4779 6 7 2.3739 -1.1948 3.2640 7 6 3.0188 -2.1053 2.5196 8 16 3.9734 -3.4543 3.1310 9 8 4.8864 -3.8002 2.0986 10 8 4.3837 -3.0934 4.4427 11 7 2.9480 -4.7437 3.2998 12 6 2.2393 -4.9552 4.5645 13 6 0.8679 -4.3359 4.4816 14 1 0.5557 -3.8345 3.5774 15 6 0.0119 -4.4094 5.5598 16 7 0.3921 -5.0205 6.6607 17 14 -1.6876 -3.6411 5.4573 18 1 -2.4501 -4.2722 4.3503 19 1 -2.4065 -3.8567 6.7387 20 1 -1.5576 -2.1842 5.2011 21 6 2.7496 -5.6727 2.1846 22 6 3.6912 -6.8681 2.3431 23 9 3.4164 -7.5217 3.5491 24 9 3.5014 -7.7556 1.2784 25 9 5.0167 -6.4204 2.3469 26 6 2.8044 -1.8109 1.2231 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1766 0.4972 2.7994 35 1 2.1442 -6.0245 4.7532 36 1 2.7990 -4.4913 5.3767 37 1 -0.2103 -5.0725 7.4192 38 1 1.7169 -6.0215 2.1817 39 1 2.9638 -5.1635 1.2450 40 1 3.1817 -2.3534 0.3688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195579249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -163.573189 kcal Electronic energy + Delta-G solvation = -31482.461218 eV Core-core repulsion = 26624.839211 eV Total energy + Delta-G solvation = -4857.622007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.096 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.58411 -47.14877 -47.00767 -42.10640 -36.65114 -36.27026 -35.98527 -35.20351 -32.58865 -31.07063 -29.54146 -29.18511 -27.76463 -26.35301 -23.36859 -23.16470 -22.42081 -21.92648 -20.52888 -18.59451 -18.05081 -17.96209 -17.72767 -17.13053 -16.72585 -16.08446 -15.94312 -15.42832 -15.33294 -14.72044 -14.58895 -14.20803 -14.00781 -13.96819 -13.95443 -13.52837 -13.48535 -13.41308 -13.22801 -13.18891 -12.80164 -12.73463 -12.63889 -12.47306 -11.95158 -11.86611 -11.70572 -11.64522 -11.49687 -11.21139 -11.11253 -11.00563 -10.83856 -10.50896 -10.14745 -9.89620 -9.77942 -9.72857 -8.78272 -8.42879 -8.30878 -6.04319 -4.09247 0.96425 1.78604 2.57551 2.91575 3.23171 3.29180 3.34965 3.35948 3.56788 4.11327 4.22736 4.38358 4.42048 4.44343 4.46312 4.51767 4.61332 4.67565 4.71444 5.00270 5.05151 5.18114 5.22156 5.25066 5.30437 5.31840 5.51146 5.57415 5.65218 5.69807 6.07063 6.14886 6.39580 7.07650 7.17832 7.41564 7.53279 7.90071 8.02078 8.16841 8.91765 9.55306 11.04609 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.005606 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.385516 B = 4993.137696 C = 7007.042170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 C -0.164 4.164 4 N -0.451 5.451 5 C 0.179 3.821 6 N -0.389 5.389 7 C -0.539 4.539 8 S 2.718 3.282 9 O -0.967 6.967 10 O -0.935 6.935 11 N -0.976 5.976 12 C 0.238 3.762 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.094 3.906 22 C 0.428 3.572 23 F -0.174 7.174 24 F -0.190 7.190 25 F -0.177 7.177 26 C 0.052 3.948 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.207 0.793 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.265 0.735 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 7.653 -16.901 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 C -0.222 4.222 4 N -0.133 5.133 5 C -0.106 4.106 6 N -0.104 5.104 7 C -0.751 4.751 8 S 2.804 3.196 9 O -0.956 6.956 10 O -0.925 6.925 11 N -0.813 5.813 12 C 0.117 3.883 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.037 4.037 22 C 0.371 3.629 23 F -0.156 7.156 24 F -0.172 7.172 25 F -0.159 7.159 26 C -0.088 4.088 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.223 0.777 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.736 7.730 -15.719 17.603 hybrid contribution -1.718 0.611 -1.139 2.150 sum 0.018 8.342 -16.858 18.809 Atomic orbital electron populations 1.22200 0.92798 1.03760 1.03541 1.21570 0.95869 0.94188 0.86356 1.22189 1.02330 0.94061 1.03579 1.46052 1.37346 1.21727 1.08151 1.25207 1.04207 1.02494 0.78732 1.70437 1.07254 1.01527 1.31151 1.33557 1.22225 1.20828 0.98470 1.01374 0.72536 0.72200 0.73455 1.93569 1.58984 1.83072 1.60016 1.93564 1.79331 1.82637 1.36924 1.57608 1.64116 1.37906 1.21623 1.19538 0.91682 0.99481 0.77608 1.21332 0.98981 1.36629 1.00208 0.92230 1.24873 0.98463 0.95120 0.95111 1.69922 1.36562 1.42369 1.03797 0.86626 0.84059 0.79931 0.77154 1.20533 1.21233 1.20158 1.22175 1.00525 0.88896 0.92084 1.21546 0.81709 0.85771 0.73830 1.93209 1.93488 1.82956 1.45910 1.93133 1.95174 1.71538 1.57376 1.93230 1.37643 1.88856 1.96140 1.22606 0.96790 0.90588 0.98838 0.91326 0.91317 0.90337 0.87935 0.91536 0.90311 0.91356 0.77696 0.93031 0.92078 0.92556 0.85359 0.87275 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.24 37.16 0.34 -0.78 16 2 C 0.12 0.92 3.59 -67.93 -0.24 0.67 16 3 C -0.16 -0.98 9.24 37.16 0.34 -0.64 16 4 N -0.45 -5.46 2.62 -111.46 -0.29 -5.75 16 5 C 0.18 2.64 11.55 -90.37 -1.04 1.60 16 6 N -0.39 -7.72 11.25 -13.86 -0.16 -7.87 16 7 C -0.54 -10.01 7.13 -17.81 -0.13 -10.14 16 8 S 2.72 55.87 5.75 -107.50 -0.62 55.25 16 9 O -0.97 -18.76 15.23 -57.17 -0.87 -19.63 16 10 O -0.93 -23.08 16.57 -57.17 -0.95 -24.03 16 11 N -0.98 -20.00 2.67 -115.66 -0.31 -20.31 16 12 C 0.24 5.93 5.25 -5.19 -0.03 5.90 16 13 C -0.53 -14.05 9.38 -34.44 -0.32 -14.38 16 14 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.09 1.52 5.42 -4.05 -0.02 1.50 16 22 C 0.43 7.30 3.29 37.16 0.12 7.42 16 23 F -0.17 -3.32 15.70 2.25 0.04 -3.28 16 24 F -0.19 -2.89 17.32 2.25 0.04 -2.85 16 25 F -0.18 -3.27 15.58 2.25 0.04 -3.23 16 26 C 0.05 0.74 11.28 -16.56 -0.19 0.55 16 27 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.42 7.95 -51.93 -0.41 0.01 16 34 H 0.21 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.05 1.32 6.73 -51.93 -0.35 0.97 16 36 H 0.06 1.71 6.91 -51.93 -0.36 1.35 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 1.93 8.11 -51.93 -0.42 1.51 16 39 H 0.11 1.38 7.61 -51.93 -0.40 0.98 16 40 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -35.63 365.81 -7.97 -43.60 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.85 Total: -1.95 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.26 Total: -6.53 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.02 Total: -58.98 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.82 Total: -43.66 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.11 Total: -9.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 55.87 SS G_CDS: -0.62 Total: 55.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.63 -7.97 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195579249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.971 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds