Wall clock time and date at job start Tue Mar 31 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00062 * 2 1 4 4 C 1.38221 * 120.00063 * 179.97438 * 3 2 1 5 5 C 1.38247 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99811 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46888 * 145.00391 * 6 5 4 8 8 C 1.53001 * 109.47007 * 264.99793 * 6 5 4 9 9 N 1.46497 * 109.47112 * 24.99881 * 6 5 4 10 10 C 1.34780 * 119.99621 * 154.99711 * 9 6 5 11 11 S 1.71192 * 120.00343 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99658 * 179.97438 * 10 9 6 13 13 C 1.39141 * 120.00117 * 183.09042 * 12 10 9 14 14 C 1.39514 * 119.83365 * 316.66736 * 13 12 10 15 15 C 1.36359 * 120.16334 * 179.71867 * 14 13 12 16 16 C 1.40883 * 119.83139 * 0.54541 * 15 14 13 17 17 C 1.41136 * 120.16183 * 179.70239 * 16 15 14 18 18 H 1.08002 * 120.00170 * 158.28349 * 17 16 15 19 19 C 1.39888 * 119.99981 * 338.27933 * 17 16 15 20 20 N 1.30887 * 119.99830 * 329.38655 * 19 17 16 21 21 Si 1.86799 * 119.99833 * 149.38712 * 19 17 16 22 22 H 1.48499 * 109.47466 * 94.98784 * 21 19 17 23 23 H 1.48502 * 109.46951 * 214.99153 * 21 19 17 24 24 H 1.48506 * 109.47046 * 334.98738 * 21 19 17 25 25 C 1.40880 * 119.67459 * 359.72955 * 16 15 14 26 26 C 1.36358 * 119.83219 * 359.97438 * 25 16 15 27 27 C 1.38211 * 120.00331 * 0.27523 * 5 4 3 28 28 C 1.50704 * 120.00317 * 179.72480 * 27 5 4 29 29 C 1.38211 * 119.99832 * 179.97438 * 2 1 3 30 30 H 1.08990 * 109.47086 * 90.00381 * 1 2 3 31 31 H 1.09002 * 109.47138 * 210.00223 * 1 2 3 32 32 H 1.09003 * 109.47075 * 329.99823 * 1 2 3 33 33 H 1.08001 * 120.00018 * 359.97359 * 3 2 1 34 34 H 1.07995 * 119.99906 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.46809 * 60.00549 * 8 6 5 36 36 H 1.09006 * 109.47117 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.47275 * 300.00170 * 8 6 5 38 38 H 0.96994 * 120.00079 * 335.00573 * 9 6 5 39 39 H 0.97004 * 120.00055 * 3.37260 * 12 10 9 40 40 H 1.07998 * 119.91842 * 359.97438 * 14 13 12 41 41 H 1.07999 * 120.08546 * 180.25603 * 15 14 13 42 42 H 0.97004 * 119.99274 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.08201 * 179.97438 * 25 16 15 44 44 H 1.07999 * 119.91548 * 179.97438 * 26 25 16 45 45 H 1.09002 * 109.46823 * 89.99787 * 28 27 5 46 46 H 1.08997 * 109.47105 * 209.99372 * 28 27 5 47 47 H 1.08994 * 109.47177 * 330.00116 * 28 27 5 48 48 H 1.08002 * 120.00605 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0016 7 1 6.1420 -0.8413 0.5918 8 6 6.2887 -0.1270 -1.4353 9 7 6.2670 1.2524 0.5842 10 6 7.4890 1.3006 1.1507 11 16 8.4708 -0.1014 1.1890 12 7 7.9385 2.4528 1.6862 13 6 9.2244 2.5200 2.2134 14 6 9.7043 1.4780 3.0074 15 6 10.9655 1.5342 3.5228 16 6 11.7803 2.6534 3.2612 17 6 13.0845 2.7216 3.7963 18 1 13.8222 3.3652 3.3404 19 6 13.4215 1.9557 4.9173 20 7 12.5098 1.6673 5.8110 21 14 15.1728 1.3448 5.1388 22 1 15.9225 2.2928 6.0015 23 1 15.1523 0.0043 5.7775 24 1 15.8358 1.2514 3.8132 25 6 11.2866 3.7043 2.4633 26 6 10.0255 3.6313 1.9498 27 6 3.5807 -1.1969 -0.0036 28 6 4.3342 -2.5021 -0.0087 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 0.0001 35 1 5.9254 0.7143 -2.0254 36 1 7.3788 -0.1275 -1.4353 37 1 5.9253 -1.0588 -1.8688 38 1 5.7109 2.0467 0.5623 39 1 7.3641 3.2342 1.7078 40 1 9.0769 0.6229 3.2109 41 1 11.3372 0.7250 4.1339 42 1 12.7437 1.1365 6.5885 43 1 11.9053 4.5655 2.2589 44 1 9.6455 4.4363 1.3383 45 1 4.5154 -2.8209 1.0178 46 1 3.7452 -3.2596 -0.5258 47 1 5.2867 -2.3696 -0.5216 48 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225475698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:06 Heat of formation + Delta-G solvation = 58.459171 kcal Electronic energy + Delta-G solvation = -27567.826746 eV Core-core repulsion = 23906.090544 eV Total energy + Delta-G solvation = -3661.736202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.42939 -38.99146 -37.48034 -35.68245 -33.97384 -33.19103 -32.11517 -30.56597 -29.51392 -28.83734 -27.45860 -26.96547 -25.17385 -23.67868 -23.26013 -21.96702 -21.06878 -20.79665 -20.14567 -18.23301 -17.49252 -17.34526 -16.16727 -15.94084 -15.31205 -15.17946 -14.86853 -14.74109 -14.61226 -14.21547 -13.99606 -13.65637 -13.46465 -13.39278 -13.33695 -12.79287 -12.70598 -12.47731 -12.30892 -12.21043 -12.04956 -11.99451 -11.75826 -11.65886 -11.26541 -11.22164 -11.10475 -10.97784 -10.85230 -10.58100 -10.55077 -9.93867 -9.59152 -9.17829 -9.04737 -8.97005 -8.67075 -7.66515 -7.47345 -7.09839 -6.91591 -6.20161 -4.31880 1.00747 1.09101 1.75640 2.43881 2.78769 3.02087 3.07281 3.11675 3.17711 3.29213 3.41932 3.89278 3.96936 4.33483 4.44965 4.51917 4.57064 4.61938 4.95629 5.01717 5.19800 5.21554 5.23603 5.29700 5.34859 5.44639 5.48246 5.59024 5.63853 5.69893 5.79485 5.89571 5.94587 6.05831 6.10783 6.21424 6.28614 6.30827 6.41571 6.46370 6.62040 6.71921 6.98435 7.01904 7.13769 7.20086 7.31906 7.58841 7.67102 7.95901 8.05015 8.21477 8.24970 8.60870 8.83949 8.97222 10.01254 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002034 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.748899 B =13762.704682 C =14168.336449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.094 4.094 6 C 0.189 3.811 7 H 0.125 0.875 8 C -0.158 4.158 9 N -0.697 5.697 10 C 0.545 3.455 11 S -0.642 6.642 12 N -0.587 5.587 13 C -0.053 4.053 14 C -0.029 4.029 15 C -0.180 4.180 16 C 0.123 3.877 17 C -0.455 4.455 18 H 0.082 0.918 19 C 0.085 3.915 20 N -0.762 5.762 21 Si 0.899 3.101 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.231 4.231 26 C -0.075 4.075 27 C -0.065 4.065 28 C -0.126 4.126 29 C -0.116 4.116 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.389 0.611 39 H 0.389 0.611 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.285 0.715 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 -2.441 -9.890 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.094 4.094 6 C 0.084 3.916 7 H 0.143 0.857 8 C -0.217 4.217 9 N -0.331 5.331 10 C 0.187 3.813 11 S -0.513 6.513 12 N -0.205 5.205 13 C -0.145 4.145 14 C -0.051 4.051 15 C -0.201 4.201 16 C 0.120 3.880 17 C -0.483 4.483 18 H 0.100 0.900 19 C -0.137 4.137 20 N -0.384 5.384 21 Si 0.722 3.278 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.252 4.252 26 C -0.095 4.095 27 C -0.065 4.065 28 C -0.183 4.183 29 C -0.134 4.134 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.224 0.776 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.503 -3.583 -9.649 22.942 hybrid contribution -0.383 1.397 0.129 1.455 sum -20.886 -2.185 -9.520 23.057 Atomic orbital electron populations 1.20788 0.91180 1.02805 1.02293 1.19906 0.96060 0.93135 0.99530 1.20942 0.93844 0.97615 1.01561 1.20806 0.94285 0.97095 1.00910 1.19830 0.94714 0.93289 1.01598 1.20095 0.88256 0.87190 0.96076 0.85717 1.22178 1.03687 1.01831 0.93960 1.44996 1.15151 1.14139 1.58777 1.22362 0.86016 0.92297 0.80657 1.93191 1.57154 1.20848 1.80058 1.41934 1.15531 1.09586 1.53409 1.16839 0.84575 1.02153 1.10970 1.20656 0.96706 0.95435 0.92284 1.20641 0.94534 0.99088 1.05860 1.17667 0.92187 0.89583 0.88550 1.19586 0.96989 1.21968 1.09741 0.89964 1.25983 0.99577 0.93698 0.94464 1.69931 1.36315 1.25846 1.06315 0.86451 0.82531 0.78977 0.79812 1.19488 1.19737 1.18012 1.20394 0.95501 0.99964 1.09323 1.19977 0.94413 0.95912 0.99228 1.19679 0.93564 0.94729 0.98538 1.20966 1.00542 0.93569 1.03194 1.20911 0.93259 0.97653 1.01623 0.91184 0.91517 0.91568 0.86095 0.86645 0.92966 0.89946 0.91221 0.77315 0.77572 0.86418 0.87337 0.90413 0.88689 0.89637 0.90498 0.91362 0.90412 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.09 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -1.05 9.24 -39.58 -0.37 -1.42 16 5 C -0.09 -0.98 5.06 -104.63 -0.53 -1.51 16 6 C 0.19 2.27 1.85 -69.08 -0.13 2.14 16 7 H 0.13 1.77 5.68 -51.93 -0.29 1.48 16 8 C -0.16 -1.82 9.22 37.16 0.34 -1.47 16 9 N -0.70 -8.81 5.00 -56.65 -0.28 -9.10 16 10 C 0.55 9.34 7.80 -86.91 -0.68 8.66 16 11 S -0.64 -13.80 23.49 -107.50 -2.53 -16.33 16 12 N -0.59 -10.08 5.29 -11.28 -0.06 -10.13 16 13 C -0.05 -1.15 5.99 -83.59 -0.50 -1.65 16 14 C -0.03 -0.71 7.77 -39.78 -0.31 -1.02 16 15 C -0.18 -4.80 8.72 -39.26 -0.34 -5.14 16 16 C 0.12 3.27 5.58 -106.80 -0.60 2.67 16 17 C -0.46 -11.92 8.95 -37.87 -0.34 -12.25 16 18 H 0.08 2.06 8.00 -52.49 -0.42 1.64 16 19 C 0.09 2.12 4.83 -17.34 -0.08 2.03 16 20 N -0.76 -19.38 11.63 55.54 0.65 -18.73 16 21 Si 0.90 18.36 29.65 -169.99 -5.04 13.31 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.23 -5.58 9.74 -39.26 -0.38 -5.96 16 26 C -0.07 -1.63 9.90 -39.79 -0.39 -2.02 16 27 C -0.06 -0.63 5.88 -104.62 -0.62 -1.25 16 28 C -0.13 -1.09 9.22 36.01 0.33 -0.76 16 29 C -0.12 -1.02 9.36 -39.58 -0.37 -1.39 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.89 6.07 -52.49 -0.32 0.58 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.17 7.48 -51.93 -0.39 0.78 16 37 H 0.07 0.69 6.88 -51.93 -0.36 0.34 16 38 H 0.39 3.82 6.22 -40.82 -0.25 3.56 16 39 H 0.39 5.17 8.84 -40.82 -0.36 4.81 16 40 H 0.12 2.93 5.92 -39.68 -0.23 2.70 16 41 H 0.11 3.00 6.44 -52.49 -0.34 2.66 16 42 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 43 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 47 H 0.08 0.71 5.40 -51.93 -0.28 0.43 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -30.74 397.21 -13.47 -44.22 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.60 Total: 14.17 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -5.60 Total: -23.40 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.30 Total: -37.96 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.31 kcal Atomic # 16 Polarization: -13.80 SS G_CDS: -2.53 Total: -16.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.74 -13.47 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225475698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.676 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds