Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47114 * 2 1 4 4 C 1.52995 * 109.47070 * 120.00025 * 2 1 3 5 5 C 1.53002 * 109.47211 * 184.99453 * 4 2 1 6 6 C 1.50697 * 109.47570 * 179.97438 * 5 4 2 7 7 C 1.38238 * 120.00052 * 269.73226 * 6 5 4 8 8 C 1.38232 * 120.00192 * 179.76390 * 7 6 5 9 9 C 1.38237 * 119.99689 * 0.50635 * 8 7 6 10 10 C 1.38234 * 120.00058 * 359.74445 * 9 8 7 11 11 C 1.38235 * 119.99896 * 89.99788 * 6 5 4 12 12 N 1.46499 * 109.46916 * 239.99800 * 2 1 3 13 13 C 1.34780 * 119.99748 * 84.99599 * 12 2 1 14 14 S 1.71200 * 120.00270 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99788 * 179.97438 * 13 12 2 16 16 C 1.39138 * 119.99921 * 174.26047 * 15 13 12 17 17 C 1.39515 * 119.83752 * 319.01331 * 16 15 13 18 18 C 1.36359 * 120.16838 * 179.75817 * 17 16 15 19 19 C 1.40882 * 119.82760 * 0.53533 * 18 17 16 20 20 C 1.41142 * 120.16121 * 179.69902 * 19 18 17 21 21 H 1.08003 * 120.00032 * 205.27823 * 20 19 18 22 22 C 1.39881 * 119.99851 * 25.27182 * 20 19 18 23 23 N 1.30886 * 120.00226 * 16.91155 * 22 20 19 24 24 Si 1.86799 * 120.00023 * 196.91048 * 22 20 19 25 25 H 1.48499 * 109.47435 * 60.00164 * 24 22 20 26 26 H 1.48493 * 109.47400 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.47389 * 300.00447 * 24 22 20 28 28 C 1.40879 * 119.67885 * 359.71693 * 19 18 17 29 29 C 1.36361 * 119.82955 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46719 * 299.99898 * 1 2 3 32 32 H 1.08992 * 109.47045 * 60.00198 * 1 2 3 33 33 H 1.09004 * 109.47272 * 304.99914 * 4 2 1 34 34 H 1.09009 * 109.47249 * 64.99893 * 4 2 1 35 35 H 1.08995 * 109.47590 * 300.00514 * 5 4 2 36 36 H 1.09009 * 109.46654 * 60.00076 * 5 4 2 37 37 H 1.08003 * 119.99898 * 359.97438 * 7 6 5 38 38 H 1.07995 * 120.00311 * 180.23396 * 8 7 6 39 39 H 1.07998 * 120.00161 * 179.72500 * 9 8 7 40 40 H 1.08003 * 120.00502 * 179.97438 * 10 9 8 41 41 H 1.07994 * 119.99841 * 0.02562 * 11 6 5 42 42 H 0.97003 * 120.00289 * 265.00418 * 12 2 1 43 43 H 0.96997 * 120.00392 * 354.26723 * 15 13 12 44 44 H 1.07999 * 119.91271 * 359.97438 * 17 16 15 45 45 H 1.08000 * 120.08724 * 180.25733 * 18 17 16 46 46 H 0.96998 * 120.00267 * 179.97438 * 23 22 20 47 47 H 1.08001 * 120.08171 * 179.97438 * 28 19 18 48 48 H 1.08001 * 119.91081 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0672 -1.3232 2.5444 7 6 4.2046 -0.6317 3.7334 8 6 4.6608 -1.2840 4.8636 9 6 4.9895 -2.6253 4.8021 10 6 4.8570 -3.3155 3.6118 11 6 4.3958 -2.6646 2.4829 12 7 2.0183 -0.6907 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 16 1.7403 1.6429 -2.4340 15 7 2.5966 -0.6535 -3.4575 16 6 2.6167 0.0063 -4.6823 17 6 1.5473 0.8243 -5.0477 18 6 1.5622 1.4780 -6.2443 19 6 2.6561 1.3166 -7.1173 20 6 2.6759 1.9849 -8.3604 21 1 3.2540 1.5840 -9.1799 22 6 1.9467 3.1664 -8.5310 23 7 1.5228 3.8305 -7.4858 24 14 1.5779 3.7963 -10.2504 25 1 0.7908 2.7787 -10.9922 26 1 0.7976 5.0564 -10.1592 27 1 2.8528 4.0548 -10.9670 28 6 3.7299 0.4848 -6.7438 29 6 3.7034 -0.1583 -5.5416 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -0.2617 2.1370 34 1 1.7516 -1.7716 1.2056 35 1 3.9995 -1.0729 0.4259 36 1 3.8533 0.4369 1.3572 37 1 3.9523 0.4174 3.7803 38 1 4.7645 -0.7447 5.7935 39 1 5.3501 -3.1339 5.6840 40 1 5.1142 -4.3634 3.5636 41 1 4.2930 -3.2036 1.5528 42 1 2.2490 -1.6319 -1.1526 43 1 2.9062 -1.5707 -3.3956 44 1 0.7071 0.9429 -4.3796 45 1 0.7356 2.1142 -6.5241 46 1 1.0175 4.6500 -7.6041 47 1 4.5716 0.3561 -7.4082 48 1 4.5257 -0.7967 -5.2541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225513320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = 52.780265 kcal Electronic energy + Delta-G solvation = -27108.563918 eV Core-core repulsion = 23446.581460 eV Total energy + Delta-G solvation = -3661.982457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.78117 -39.18426 -37.82312 -35.93561 -34.00429 -33.10223 -31.23468 -31.19408 -29.51853 -28.89189 -28.62248 -25.25102 -24.43549 -23.41589 -22.88413 -21.77959 -21.17065 -21.08229 -20.35695 -18.09426 -17.32721 -17.22867 -17.03219 -15.90325 -15.54892 -15.33238 -15.16652 -14.93213 -14.45887 -14.12105 -13.94892 -13.76784 -13.68925 -13.37037 -13.15168 -12.98055 -12.72806 -12.35012 -12.13559 -12.04493 -11.81525 -11.73733 -11.60047 -11.46292 -11.14511 -11.09887 -11.06371 -10.87153 -10.82355 -10.54401 -10.41898 -9.88684 -9.64183 -9.33090 -9.23957 -9.00444 -8.82613 -7.66711 -7.33234 -6.96939 -6.77378 -6.20341 -4.31670 1.03922 1.08283 1.76678 2.50271 2.84645 3.08250 3.09585 3.11419 3.16726 3.28478 3.46033 3.92799 4.00818 4.30699 4.50360 4.63879 4.66675 4.77664 4.80030 4.83992 4.90718 5.18944 5.21356 5.36681 5.40469 5.43711 5.57304 5.67208 5.71024 5.73041 5.76052 5.87816 5.98099 6.11274 6.15264 6.19938 6.31977 6.32985 6.39628 6.43114 6.63135 6.69557 7.00904 7.05230 7.14865 7.24966 7.33134 7.62269 7.69477 7.96173 8.06833 8.21795 8.29101 8.65171 8.87756 8.98460 10.17633 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.001837 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.449015 B =15241.832935 C =15767.729481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.115 0.885 4 C -0.119 4.119 5 C -0.084 4.084 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.119 4.119 12 N -0.695 5.695 13 C 0.544 3.456 14 S -0.636 6.636 15 N -0.593 5.593 16 C -0.037 4.037 17 C -0.038 4.038 18 C -0.164 4.164 19 C 0.119 3.881 20 C -0.453 4.453 21 H 0.079 0.921 22 C 0.073 3.927 23 N -0.774 5.774 24 Si 0.909 3.091 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.226 4.226 29 C -0.082 4.082 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.388 0.612 43 H 0.388 0.612 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.284 0.716 47 H 0.095 0.905 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -12.923 20.278 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.133 0.867 4 C -0.157 4.157 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.137 4.137 12 N -0.327 5.327 13 C 0.185 3.815 14 S -0.507 6.507 15 N -0.211 5.211 16 C -0.130 4.130 17 C -0.060 4.060 18 C -0.185 4.185 19 C 0.116 3.884 20 C -0.482 4.482 21 H 0.097 0.903 22 C -0.147 4.147 23 N -0.398 5.398 24 Si 0.733 3.267 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.247 4.247 29 C -0.102 4.102 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.224 0.776 43 H 0.224 0.776 44 H 0.128 0.872 45 H 0.138 0.862 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.599 -11.461 20.334 23.396 hybrid contribution 0.491 -1.402 -0.491 1.564 sum 2.089 -12.863 19.843 23.739 Atomic orbital electron populations 1.22158 0.94570 1.01631 1.03805 1.21321 0.94639 0.98890 0.80997 0.86702 1.21913 0.94798 1.01175 0.97802 1.20657 0.95422 1.01078 0.94939 1.19951 0.98378 0.94048 0.95355 1.21114 0.99865 1.00059 0.92472 1.21165 0.99214 0.94838 0.98416 1.21146 1.00772 0.94781 0.97934 1.21148 0.99628 0.99864 0.93062 1.21062 0.99827 0.94264 0.98548 1.44964 1.66881 1.12361 1.08540 1.22454 0.83250 0.94832 0.80923 1.93387 1.70727 0.94013 1.92623 1.41994 1.58790 1.14232 1.06118 1.16888 1.00119 1.10734 0.85271 1.20499 0.96178 0.94167 0.95120 1.20873 0.99747 1.03142 0.94727 1.17715 0.89545 0.88781 0.92351 1.19582 1.24907 1.05853 0.97840 0.90327 1.25980 0.93675 0.96344 0.98658 1.69878 1.25812 1.12853 1.31267 0.86355 0.79488 0.78473 0.82362 1.18776 1.20242 1.18987 1.20460 0.99747 1.07046 0.97426 1.19983 0.94495 1.00293 0.95467 0.93251 0.91522 0.90414 0.89759 0.91540 0.91040 0.90288 0.85917 0.86130 0.86284 0.86213 0.86278 0.77643 0.77622 0.87164 0.86213 0.90511 0.88683 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.43 37.16 0.35 -1.40 16 2 C 0.15 1.56 2.34 -67.93 -0.16 1.40 16 3 H 0.12 1.54 6.81 -51.93 -0.35 1.19 16 4 C -0.12 -0.92 4.74 -26.73 -0.13 -1.04 16 5 C -0.08 -0.70 5.23 -27.88 -0.15 -0.84 16 6 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 7 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 8 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 9 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 10 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 11 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 12 N -0.69 -7.97 4.53 -55.52 -0.25 -8.22 16 13 C 0.54 9.05 7.70 -86.92 -0.67 8.38 16 14 S -0.64 -13.98 23.78 -107.50 -2.56 -16.54 16 15 N -0.59 -9.89 5.29 -11.28 -0.06 -9.95 16 16 C -0.04 -0.81 5.94 -83.59 -0.50 -1.30 16 17 C -0.04 -0.93 7.76 -39.78 -0.31 -1.24 16 18 C -0.16 -4.35 8.63 -39.26 -0.34 -4.69 16 19 C 0.12 3.16 5.57 -106.80 -0.59 2.56 16 20 C -0.45 -11.87 9.04 -37.87 -0.34 -12.21 16 21 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 22 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 23 N -0.77 -20.43 10.94 55.54 0.61 -19.82 16 24 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 28 C -0.23 -5.43 9.74 -39.26 -0.38 -5.81 16 29 C -0.08 -1.77 9.90 -39.78 -0.39 -2.16 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.09 7.48 -51.93 -0.39 0.70 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 36 H 0.08 0.72 8.08 -51.92 -0.42 0.30 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.39 3.26 8.62 -40.82 -0.35 2.91 16 43 H 0.39 4.90 8.84 -40.82 -0.36 4.54 16 44 H 0.11 2.71 6.16 -47.26 -0.29 2.41 16 45 H 0.12 3.32 6.17 -52.49 -0.32 2.99 16 46 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 47 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 48 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 406.36 15.07 6.12 6.12 Total: -1.00 -31.61 406.36 -14.45 -46.07 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.09 Total: 13.22 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -6.19 Total: -24.42 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.30 Total: -37.98 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -13.98 SS G_CDS: -2.56 Total: -16.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.61 -14.45 -46.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225513320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.845 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds