Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38264 * 119.99815 * 2 1 4 4 C 1.38213 * 119.99979 * 180.20838 * 3 2 1 5 5 C 1.38255 * 119.99672 * 359.53558 * 4 3 2 6 6 C 1.50700 * 119.99533 * 180.25328 * 5 4 3 7 7 C 1.38210 * 120.00483 * 0.27820 * 5 4 3 8 8 C 1.50692 * 120.00205 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.47300 * 324.99915 * 8 7 5 10 10 C 1.53001 * 109.47093 * 84.99696 * 8 7 5 11 11 N 1.46498 * 109.47244 * 204.99768 * 8 7 5 12 12 C 1.34779 * 120.00324 * 155.00229 * 11 8 7 13 13 S 1.71206 * 119.99799 * 359.97438 * 12 11 8 14 14 N 1.34774 * 120.00605 * 180.02562 * 12 11 8 15 15 C 1.39133 * 120.00340 * 174.25825 * 14 12 11 16 16 C 1.39515 * 119.83517 * 318.99818 * 15 14 12 17 17 C 1.36363 * 120.16497 * 179.75845 * 16 15 14 18 18 C 1.40875 * 119.83124 * 0.54489 * 17 16 15 19 19 C 1.41137 * 120.15928 * 179.69188 * 18 17 16 20 20 H 1.08003 * 119.99725 * 205.26522 * 19 18 17 21 21 C 1.39887 * 120.00078 * 25.27105 * 19 18 17 22 22 N 1.30888 * 119.99889 * 16.91639 * 21 19 18 23 23 Si 1.86802 * 120.00069 * 196.91674 * 21 19 18 24 24 H 1.48507 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46987 * 119.99815 * 23 21 19 26 26 H 1.48504 * 109.47166 * 240.00067 * 23 21 19 27 27 C 1.40877 * 119.67753 * 359.71355 * 18 17 16 28 28 C 1.36358 * 119.83299 * 0.02562 * 27 18 17 29 29 C 1.38208 * 120.00214 * 179.78758 * 2 1 3 30 30 H 1.08996 * 109.47158 * 270.20877 * 1 2 3 31 31 H 1.08998 * 109.47413 * 30.21091 * 1 2 3 32 32 H 1.09002 * 109.46887 * 150.21006 * 1 2 3 33 33 H 1.07998 * 119.99944 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99815 * 179.81328 * 4 3 2 35 35 H 1.09001 * 109.47375 * 90.00063 * 6 5 4 36 36 H 1.09000 * 109.47105 * 210.00102 * 6 5 4 37 37 H 1.09005 * 109.47664 * 329.99924 * 6 5 4 38 38 H 1.09003 * 109.47356 * 179.97438 * 10 8 7 39 39 H 1.08996 * 109.47346 * 300.00054 * 10 8 7 40 40 H 1.08998 * 109.47077 * 60.00275 * 10 8 7 41 41 H 0.96996 * 119.99945 * 334.99924 * 11 8 7 42 42 H 0.97003 * 119.99242 * 354.24894 * 14 12 11 43 43 H 1.08001 * 119.91490 * 0.02562 * 16 15 14 44 44 H 1.07997 * 120.08034 * 180.25938 * 17 16 15 45 45 H 0.96999 * 119.99416 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.08305 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.91913 * 180.02562 * 28 27 18 48 48 H 1.07992 * 120.00110 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0044 5 6 4.2717 0.0002 0.0010 6 6 5.7787 0.0003 0.0020 7 6 3.5807 -1.1968 0.0049 8 6 4.3343 -2.5018 0.0101 9 1 5.2454 -2.3977 -0.5791 10 6 4.6973 -2.8753 1.4488 11 7 3.4948 -3.5528 -0.5703 12 6 4.0648 -4.6370 -1.1325 13 16 5.7700 -4.7858 -1.1689 14 7 3.2925 -5.6037 -1.6669 15 6 3.8788 -6.6632 -2.3521 16 6 4.9508 -6.4250 -3.2126 17 6 5.5336 -7.4591 -3.8838 18 6 5.0432 -8.7690 -3.7153 19 6 5.6370 -9.8435 -4.4115 20 1 5.0630 -10.7339 -4.6214 21 6 6.9690 -9.7552 -4.8296 22 7 7.7600 -8.8520 -4.3084 23 14 7.6188 -10.9263 -6.1318 24 1 6.5329 -11.8459 -6.5567 25 1 8.0961 -10.1484 -7.3033 26 1 8.7441 -11.7161 -5.5702 27 6 3.9569 -9.0009 -2.8488 28 6 3.3876 -7.9577 -2.1802 29 6 2.1981 -1.1969 0.0044 30 1 -0.3633 0.0037 1.0276 31 1 -0.3634 0.8880 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1328 -0.0074 35 1 6.1414 0.0045 1.0299 36 1 6.1424 -0.8918 -0.5079 37 1 6.1424 0.8882 -0.5152 38 1 5.2419 -3.8195 1.4526 39 1 5.3219 -2.0934 1.8806 40 1 3.7862 -2.9795 2.0380 41 1 2.5287 -3.4684 -0.5499 42 1 2.3279 -5.5607 -1.5737 43 1 5.3227 -5.4196 -3.3442 44 1 6.3660 -7.2737 -4.5463 45 1 8.6837 -8.7911 -4.5981 46 1 3.5754 -10.0024 -2.7151 47 1 2.5551 -8.1340 -1.5153 48 1 1.6582 -2.1322 0.0075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225536017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = 60.467613 kcal Electronic energy + Delta-G solvation = -27735.898390 eV Core-core repulsion = 24074.249281 eV Total energy + Delta-G solvation = -3661.649109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43044 -38.98419 -37.44191 -35.61945 -34.21899 -33.28947 -31.60125 -29.68944 -29.55277 -29.51316 -28.72346 -25.36319 -25.10610 -24.04961 -23.61111 -21.85312 -20.99677 -20.95721 -20.08690 -18.06236 -17.36270 -17.32811 -16.19593 -16.03988 -15.34443 -15.14067 -14.96240 -14.78061 -14.47039 -14.18443 -13.96363 -13.75047 -13.48533 -13.34090 -13.10670 -12.84714 -12.74760 -12.43984 -12.25632 -12.14181 -12.04707 -11.80794 -11.77581 -11.69460 -11.35886 -11.20828 -11.10157 -10.87789 -10.75801 -10.54974 -10.45921 -9.88241 -9.67604 -9.35491 -9.08334 -8.85935 -8.64400 -7.65823 -7.35796 -6.99672 -6.78069 -6.21662 -4.32100 1.04073 1.08039 1.74287 2.46694 2.82048 3.05762 3.08795 3.13424 3.16245 3.26640 3.42905 3.92572 3.97646 4.31017 4.48183 4.55641 4.63376 4.70277 4.88490 5.09153 5.17665 5.21591 5.25443 5.30274 5.39532 5.43050 5.47751 5.65612 5.68532 5.71505 5.76203 5.88467 5.96407 6.07300 6.13117 6.24965 6.27580 6.32051 6.38905 6.47547 6.61353 6.73021 7.00373 7.04887 7.13057 7.23500 7.31703 7.61683 7.68147 7.95231 8.06970 8.21176 8.28695 8.65145 8.87514 8.98067 10.16952 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002167 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.151797 B =12916.399102 C =13609.170752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.083 4.083 8 C 0.187 3.813 9 H 0.128 0.872 10 C -0.157 4.157 11 N -0.697 5.697 12 C 0.543 3.457 13 S -0.634 6.634 14 N -0.591 5.591 15 C -0.038 4.038 16 C -0.037 4.037 17 C -0.165 4.165 18 C 0.119 3.881 19 C -0.452 4.452 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.774 5.774 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.226 4.226 28 C -0.081 4.081 29 C -0.117 4.117 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.388 0.612 42 H 0.389 0.611 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.283 0.717 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 18.353 8.326 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.075 4.075 6 C -0.182 4.182 7 C -0.084 4.084 8 C 0.082 3.918 9 H 0.145 0.855 10 C -0.215 4.215 11 N -0.331 5.331 12 C 0.185 3.815 13 S -0.505 6.505 14 N -0.209 5.209 15 C -0.131 4.131 16 C -0.059 4.059 17 C -0.185 4.185 18 C 0.116 3.884 19 C -0.480 4.480 20 H 0.098 0.902 21 C -0.147 4.147 22 N -0.398 5.398 23 Si 0.732 3.268 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.246 4.246 28 C -0.102 4.102 29 C -0.135 4.135 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.226 0.774 42 H 0.224 0.776 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.676 18.346 8.307 22.343 hybrid contribution -1.516 -0.361 -0.250 1.578 sum -11.192 17.986 8.057 22.664 Atomic orbital electron populations 1.20790 0.91173 1.02830 1.02311 1.19839 0.96014 0.92999 0.99980 1.21008 0.94200 0.97413 1.01157 1.21019 0.94094 0.97428 1.00410 1.19672 0.96367 0.92031 0.99452 1.20956 0.90728 1.03693 1.02775 1.19822 0.93582 0.94355 1.00667 1.20163 0.94051 0.81359 0.96199 0.85504 1.22142 1.01722 1.03787 0.93878 1.45021 1.09282 1.19329 1.59458 1.22442 0.96211 0.82335 0.80534 1.93359 0.89730 1.88144 1.79255 1.41989 1.07882 1.21430 1.49628 1.16895 1.05631 0.84892 1.05652 1.20526 0.93010 0.99603 0.92767 1.20875 1.02614 0.91386 1.03658 1.17722 0.89589 0.92920 0.88158 1.19645 0.95954 1.01986 1.30461 0.90247 1.25989 0.97065 0.95926 0.95716 1.69898 1.06415 1.29623 1.33822 0.86268 0.79304 0.80525 0.80697 1.18378 1.19608 1.19919 1.20467 1.03595 0.96341 1.04245 1.19983 0.99392 0.91234 0.99564 1.20690 0.93385 0.97351 1.02098 0.91175 0.91497 0.91595 0.86106 0.85807 0.90745 0.90253 0.91394 0.89968 0.91266 0.93049 0.77399 0.77600 0.87101 0.86188 0.90622 0.88649 0.89581 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -0.97 9.70 -39.58 -0.38 -1.36 16 5 C -0.07 -0.74 5.88 -104.63 -0.62 -1.35 16 6 C -0.13 -1.11 9.38 36.01 0.34 -0.77 16 7 C -0.08 -0.88 5.06 -104.63 -0.53 -1.41 16 8 C 0.19 2.28 2.05 -69.09 -0.14 2.14 16 9 H 0.13 1.83 4.84 -51.93 -0.25 1.58 16 10 C -0.16 -1.83 9.42 37.16 0.35 -1.48 16 11 N -0.70 -8.90 5.00 -56.65 -0.28 -9.19 16 12 C 0.54 9.38 7.70 -86.92 -0.67 8.71 16 13 S -0.63 -14.02 23.77 -107.50 -2.56 -16.57 16 14 N -0.59 -10.10 5.29 -11.28 -0.06 -10.16 16 15 C -0.04 -0.82 5.94 -83.59 -0.50 -1.32 16 16 C -0.04 -0.91 7.76 -39.78 -0.31 -1.22 16 17 C -0.16 -4.37 8.63 -39.26 -0.34 -4.70 16 18 C 0.12 3.16 5.57 -106.80 -0.59 2.56 16 19 C -0.45 -11.83 9.04 -37.87 -0.34 -12.17 16 20 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 21 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 22 N -0.77 -20.39 10.94 55.54 0.61 -19.78 16 23 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.23 -5.43 9.74 -39.26 -0.38 -5.81 16 28 C -0.08 -1.76 9.90 -39.78 -0.39 -2.15 16 29 C -0.12 -1.11 8.89 -39.58 -0.35 -1.46 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.82 6.03 -51.93 -0.31 0.50 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.08 1.18 7.49 -51.93 -0.39 0.80 16 39 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.39 3.85 6.23 -40.82 -0.25 3.59 16 42 H 0.39 5.07 8.84 -40.82 -0.36 4.71 16 43 H 0.11 2.74 6.16 -47.06 -0.29 2.45 16 44 H 0.12 3.33 6.17 -52.49 -0.32 3.01 16 45 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 46 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.12 0.92 6.07 -52.49 -0.32 0.61 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -31.37 398.18 -13.59 -44.96 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.68 Total: 14.43 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -5.59 Total: -23.19 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.26 Total: -39.13 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -14.02 SS G_CDS: -2.56 Total: -16.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.37 -13.59 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225536017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.423 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds