Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99810 * 2 1 4 4 C 1.38219 * 119.99842 * 180.23359 * 3 2 1 5 5 C 1.38257 * 119.99654 * 359.53276 * 4 3 2 6 6 C 1.50706 * 119.99959 * 180.25157 * 5 4 3 7 7 C 1.38212 * 120.00381 * 0.28054 * 5 4 3 8 8 C 1.50697 * 120.00280 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47218 * 32.72768 * 8 7 5 10 10 C 1.53006 * 109.47090 * 272.72991 * 8 7 5 11 11 N 1.46501 * 109.47318 * 152.73124 * 8 7 5 12 12 C 1.34775 * 119.99733 * 207.86903 * 11 8 7 13 13 S 1.71198 * 120.00369 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99853 * 179.97438 * 12 11 8 15 15 C 1.39137 * 120.00239 * 183.98405 * 14 12 11 16 16 C 1.39514 * 119.83463 * 315.43445 * 15 14 12 17 17 C 1.36357 * 120.16474 * 179.75885 * 16 15 14 18 18 C 1.40872 * 119.82877 * 0.53478 * 17 16 15 19 19 C 1.41144 * 120.16195 * 179.69959 * 18 17 16 20 20 H 1.08003 * 120.00642 * 169.52774 * 19 18 17 21 21 C 1.39881 * 119.99689 * 349.51977 * 19 18 17 22 22 N 1.30889 * 120.00271 * 320.86388 * 21 19 18 23 23 Si 1.86799 * 119.99954 * 140.86481 * 21 19 18 24 24 H 1.48495 * 109.47386 * 94.99471 * 23 21 19 25 25 H 1.48499 * 109.47175 * 214.99600 * 23 21 19 26 26 H 1.48496 * 109.47091 * 334.99423 * 23 21 19 27 27 C 1.40879 * 119.68037 * 359.71821 * 18 17 16 28 28 C 1.36360 * 119.83104 * 359.97438 * 27 18 17 29 29 C 1.38209 * 120.00154 * 179.83153 * 2 1 3 30 30 H 1.09003 * 109.46694 * 270.17039 * 1 2 3 31 31 H 1.09002 * 109.46964 * 30.16316 * 1 2 3 32 32 H 1.08997 * 109.47472 * 150.17048 * 1 2 3 33 33 H 1.07998 * 120.00851 * 0.04411 * 3 2 1 34 34 H 1.07996 * 120.00554 * 179.80306 * 4 3 2 35 35 H 1.09004 * 109.46993 * 89.99859 * 6 5 4 36 36 H 1.08997 * 109.47392 * 210.00116 * 6 5 4 37 37 H 1.08998 * 109.46984 * 330.00313 * 6 5 4 38 38 H 1.09002 * 109.46568 * 300.00138 * 10 8 7 39 39 H 1.09000 * 109.46777 * 59.99904 * 10 8 7 40 40 H 1.08995 * 109.47214 * 179.97438 * 10 8 7 41 41 H 0.96994 * 119.99963 * 27.86248 * 11 8 7 42 42 H 0.97001 * 119.99320 * 3.98495 * 14 12 11 43 43 H 1.08003 * 119.91579 * 359.97438 * 16 15 14 44 44 H 1.08001 * 120.08305 * 180.25381 * 17 16 15 45 45 H 0.97002 * 119.99797 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.08742 * 179.97438 * 27 18 17 47 47 H 1.07997 * 119.91644 * 179.97438 * 28 27 18 48 48 H 1.08004 * 119.99744 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0004 7 6 3.5807 -1.1970 0.0039 8 6 4.3341 -2.5021 0.0086 9 1 5.2643 -2.3826 0.5641 10 6 4.6491 -2.9144 -1.4308 11 7 3.5149 -3.5367 0.6448 12 6 4.1056 -4.5760 1.2670 13 16 5.8134 -4.6877 1.3135 14 7 3.3520 -5.5276 1.8527 15 6 3.9602 -6.5559 2.5658 16 6 5.0780 -7.2012 2.0362 17 6 5.6824 -8.2064 2.7315 18 6 5.1685 -8.6005 3.9826 19 6 5.7847 -9.6444 4.7055 20 1 5.5001 -9.8332 5.7301 21 6 6.7640 -10.4348 4.0947 22 7 6.6285 -10.7942 2.8435 23 14 8.2652 -10.9774 5.0649 24 1 8.0282 -12.3310 5.6278 25 1 9.4477 -11.0147 4.1674 26 1 8.5133 -10.0179 6.1708 27 6 4.0362 -7.9477 4.5086 28 6 3.4462 -6.9399 3.8046 29 6 2.1981 -1.1969 0.0035 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3634 -0.8915 -0.5112 33 1 1.6584 2.1327 0.0007 34 1 4.1205 2.1326 -0.0081 35 1 6.1418 0.0040 1.0282 36 1 6.1422 -0.8920 -0.5098 37 1 6.1422 0.8879 -0.5168 38 1 3.7189 -3.0338 -1.9862 39 1 5.2586 -2.1446 -1.9040 40 1 5.1945 -3.8581 -1.4273 41 1 2.5474 -3.4736 0.6182 42 1 2.3854 -5.4955 1.7769 43 1 5.4677 -6.9014 1.0745 44 1 6.5501 -8.7023 2.3221 45 1 7.3074 -11.3425 2.4201 46 1 3.6365 -8.2448 5.4670 47 1 2.5779 -6.4388 4.2063 48 1 1.6581 -2.1322 0.0059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225536048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = 57.957142 kcal Electronic energy + Delta-G solvation = -27697.586046 eV Core-core repulsion = 24035.828075 eV Total energy + Delta-G solvation = -3661.757971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.41792 -38.94521 -37.42130 -35.62577 -34.23274 -33.42429 -31.63369 -29.70694 -29.55559 -29.46605 -28.80490 -25.38098 -25.10615 -24.02772 -23.58855 -21.84176 -21.02739 -20.94892 -20.07494 -18.06030 -17.43363 -17.33136 -16.17015 -16.02928 -15.30688 -15.21760 -14.98414 -14.69438 -14.52053 -14.19878 -13.93839 -13.75477 -13.52417 -13.42147 -13.09133 -12.83542 -12.73477 -12.48678 -12.30353 -12.16284 -12.06900 -12.01073 -11.77728 -11.65522 -11.29762 -11.12795 -11.07611 -11.00422 -10.82539 -10.58739 -10.51977 -10.01236 -9.64748 -9.15659 -9.04466 -8.87033 -8.63623 -7.66940 -7.51236 -7.14898 -6.98780 -6.20629 -4.30271 1.03864 1.08762 1.78896 2.46230 2.77327 3.01920 3.05579 3.10182 3.20506 3.33051 3.43749 3.84493 4.00230 4.31903 4.42214 4.48810 4.55884 4.70681 4.90034 5.08044 5.19796 5.22689 5.25841 5.28979 5.39060 5.43688 5.50323 5.57542 5.68720 5.71836 5.77817 5.89338 5.96803 6.08447 6.13670 6.19666 6.28125 6.32542 6.45195 6.48399 6.64037 6.73511 6.91003 7.03596 7.16922 7.22812 7.34431 7.61173 7.67251 7.99749 8.05259 8.22428 8.25610 8.59334 8.83024 8.98971 9.86998 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.002157 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.592808 B =12976.417033 C =13678.144679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.083 4.083 8 C 0.185 3.815 9 H 0.130 0.870 10 C -0.157 4.157 11 N -0.697 5.697 12 C 0.546 3.454 13 S -0.644 6.644 14 N -0.585 5.585 15 C -0.065 4.065 16 C -0.023 4.023 17 C -0.197 4.197 18 C 0.119 3.881 19 C -0.452 4.452 20 H 0.084 0.916 21 C 0.091 3.909 22 N -0.743 5.743 23 Si 0.896 3.104 24 H -0.268 1.268 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.240 4.240 28 C -0.069 4.069 29 C -0.116 4.116 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.389 0.611 42 H 0.388 0.612 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.287 0.713 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 18.970 -8.353 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.075 4.075 6 C -0.181 4.181 7 C -0.084 4.084 8 C 0.080 3.920 9 H 0.147 0.853 10 C -0.216 4.216 11 N -0.331 5.331 12 C 0.188 3.812 13 S -0.515 6.515 14 N -0.203 5.203 15 C -0.157 4.157 16 C -0.045 4.045 17 C -0.218 4.218 18 C 0.116 3.884 19 C -0.478 4.478 20 H 0.102 0.898 21 C -0.134 4.134 22 N -0.364 5.364 23 Si 0.719 3.281 24 H -0.193 1.193 25 H -0.196 1.196 26 H -0.178 1.178 27 C -0.260 4.260 28 C -0.089 4.089 29 C -0.135 4.135 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.226 0.774 42 H 0.223 0.777 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.801 18.760 -8.536 22.037 hybrid contribution -1.310 -0.093 0.315 1.350 sum -9.110 18.667 -8.220 22.339 Atomic orbital electron populations 1.20793 0.91176 1.02759 1.02387 1.19837 0.96016 0.93005 1.00021 1.21006 0.94197 0.97414 1.01131 1.21018 0.94098 0.97423 1.00490 1.19692 0.96360 0.92046 0.99365 1.20942 0.90727 1.03302 1.03162 1.19829 0.93577 0.94340 1.00674 1.20172 0.94914 0.81779 0.95132 0.85306 1.22153 1.01864 1.03457 0.94099 1.44967 1.09145 1.22698 1.56279 1.22389 0.96007 0.80699 0.82149 1.93178 0.90030 1.88574 1.79670 1.41926 1.07963 1.22355 1.48064 1.16777 1.05282 0.97765 0.95893 1.20570 0.92682 0.91704 0.99520 1.20707 1.02987 1.00533 0.97539 1.17624 0.88797 0.90711 0.91272 1.19612 1.16954 1.11609 0.99614 0.89790 1.26072 0.99290 0.93428 0.94635 1.70001 1.31758 1.21357 1.13243 0.86499 0.80738 0.79530 0.81372 1.19348 1.19585 1.17783 1.20290 1.00804 1.03503 1.01414 1.19955 0.98681 0.97885 0.92409 1.20700 0.93398 0.97365 1.01988 0.91145 0.91517 0.91597 0.86111 0.85818 0.90534 0.90537 0.91408 0.92921 0.91187 0.90245 0.77384 0.77671 0.86709 0.86981 0.90184 0.88829 0.89779 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 5 C -0.07 -0.74 5.88 -104.62 -0.62 -1.36 16 6 C -0.12 -1.12 9.21 36.01 0.33 -0.78 16 7 C -0.08 -0.89 5.04 -104.63 -0.53 -1.42 16 8 C 0.19 2.25 1.88 -69.08 -0.13 2.12 16 9 H 0.13 1.87 5.39 -51.93 -0.28 1.59 16 10 C -0.16 -1.79 9.31 37.16 0.35 -1.45 16 11 N -0.70 -8.95 4.97 -56.65 -0.28 -9.24 16 12 C 0.55 9.48 7.83 -86.91 -0.68 8.80 16 13 S -0.64 -14.00 23.85 -107.50 -2.56 -16.56 16 14 N -0.59 -10.18 5.28 -11.28 -0.06 -10.24 16 15 C -0.06 -1.42 5.96 -83.60 -0.50 -1.92 16 16 C -0.02 -0.57 7.77 -39.78 -0.31 -0.88 16 17 C -0.20 -5.25 8.85 -39.26 -0.35 -5.60 16 18 C 0.12 3.16 5.68 -106.80 -0.61 2.56 16 19 C -0.45 -11.75 8.92 -37.87 -0.34 -12.09 16 20 H 0.08 2.09 8.06 -52.48 -0.42 1.67 16 21 C 0.09 2.24 4.74 -17.34 -0.08 2.15 16 22 N -0.74 -18.54 11.52 55.54 0.64 -17.90 16 23 Si 0.90 18.10 29.69 -169.99 -5.05 13.06 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.25 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.24 -5.82 9.74 -39.26 -0.38 -6.20 16 28 C -0.07 -1.52 9.90 -39.79 -0.39 -1.91 16 29 C -0.12 -1.11 8.89 -39.59 -0.35 -1.46 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.72 5.62 -51.93 -0.29 0.43 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.69 7.14 -51.93 -0.37 0.32 16 40 H 0.08 1.09 7.82 -51.93 -0.41 0.69 16 41 H 0.39 3.90 6.34 -40.82 -0.26 3.64 16 42 H 0.39 5.24 8.84 -40.82 -0.36 4.88 16 43 H 0.12 2.86 6.00 -41.65 -0.25 2.61 16 44 H 0.11 3.09 6.02 -52.49 -0.32 2.78 16 45 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 46 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 47 H 0.08 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.12 0.93 6.17 -52.48 -0.32 0.61 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -30.64 398.14 -13.55 -44.20 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.63 Total: 14.65 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -5.61 Total: -23.96 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.30 Total: -37.38 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.05 Total: 13.06 kcal Atomic # 16 Polarization: -14.00 SS G_CDS: -2.56 Total: -16.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.64 -13.55 -44.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225536048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.155 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds