Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99810 * 2 1 4 4 C 1.38219 * 119.99842 * 180.23359 * 3 2 1 5 5 C 1.38257 * 119.99654 * 359.53276 * 4 3 2 6 6 C 1.50706 * 119.99959 * 180.25157 * 5 4 3 7 7 C 1.38212 * 120.00381 * 0.28054 * 5 4 3 8 8 C 1.50697 * 120.00280 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47218 * 32.72768 * 8 7 5 10 10 C 1.53006 * 109.47090 * 272.72991 * 8 7 5 11 11 N 1.46501 * 109.47318 * 152.73124 * 8 7 5 12 12 C 1.34775 * 119.99733 * 207.86903 * 11 8 7 13 13 S 1.71198 * 120.00369 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99853 * 179.97438 * 12 11 8 15 15 C 1.39137 * 120.00239 * 183.98405 * 14 12 11 16 16 C 1.39514 * 119.83463 * 315.43445 * 15 14 12 17 17 C 1.36357 * 120.16474 * 179.75885 * 16 15 14 18 18 C 1.40872 * 119.82877 * 0.53478 * 17 16 15 19 19 C 1.41144 * 120.16195 * 179.69959 * 18 17 16 20 20 H 1.08003 * 120.00642 * 169.52774 * 19 18 17 21 21 C 1.39881 * 119.99689 * 349.51977 * 19 18 17 22 22 N 1.30889 * 120.00271 * 320.86388 * 21 19 18 23 23 Si 1.86799 * 119.99954 * 140.86481 * 21 19 18 24 24 H 1.48495 * 109.47386 * 94.99471 * 23 21 19 25 25 H 1.48499 * 109.47175 * 214.99600 * 23 21 19 26 26 H 1.48496 * 109.47091 * 334.99423 * 23 21 19 27 27 C 1.40879 * 119.68037 * 359.71821 * 18 17 16 28 28 C 1.36360 * 119.83104 * 359.97438 * 27 18 17 29 29 C 1.38209 * 120.00154 * 179.83153 * 2 1 3 30 30 H 1.09003 * 109.46694 * 270.17039 * 1 2 3 31 31 H 1.09002 * 109.46964 * 30.16316 * 1 2 3 32 32 H 1.08997 * 109.47472 * 150.17048 * 1 2 3 33 33 H 1.07998 * 120.00851 * 0.04411 * 3 2 1 34 34 H 1.07996 * 120.00554 * 179.80306 * 4 3 2 35 35 H 1.09004 * 109.46993 * 89.99859 * 6 5 4 36 36 H 1.08997 * 109.47392 * 210.00116 * 6 5 4 37 37 H 1.08998 * 109.46984 * 330.00313 * 6 5 4 38 38 H 1.09002 * 109.46568 * 300.00138 * 10 8 7 39 39 H 1.09000 * 109.46777 * 59.99904 * 10 8 7 40 40 H 1.08995 * 109.47214 * 179.97438 * 10 8 7 41 41 H 0.96994 * 119.99963 * 27.86248 * 11 8 7 42 42 H 0.97001 * 119.99320 * 3.98495 * 14 12 11 43 43 H 1.08003 * 119.91579 * 359.97438 * 16 15 14 44 44 H 1.08001 * 120.08305 * 180.25381 * 17 16 15 45 45 H 0.97002 * 119.99797 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.08742 * 179.97438 * 27 18 17 47 47 H 1.07997 * 119.91644 * 179.97438 * 28 27 18 48 48 H 1.08004 * 119.99744 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0004 7 6 3.5807 -1.1970 0.0039 8 6 4.3341 -2.5021 0.0086 9 1 5.2643 -2.3826 0.5641 10 6 4.6491 -2.9144 -1.4308 11 7 3.5149 -3.5367 0.6448 12 6 4.1056 -4.5760 1.2670 13 16 5.8134 -4.6877 1.3135 14 7 3.3520 -5.5276 1.8527 15 6 3.9602 -6.5559 2.5658 16 6 5.0780 -7.2012 2.0362 17 6 5.6824 -8.2064 2.7315 18 6 5.1685 -8.6005 3.9826 19 6 5.7847 -9.6444 4.7055 20 1 5.5001 -9.8332 5.7301 21 6 6.7640 -10.4348 4.0947 22 7 6.6285 -10.7942 2.8435 23 14 8.2652 -10.9774 5.0649 24 1 8.0282 -12.3310 5.6278 25 1 9.4477 -11.0147 4.1674 26 1 8.5133 -10.0179 6.1708 27 6 4.0362 -7.9477 4.5086 28 6 3.4462 -6.9399 3.8046 29 6 2.1981 -1.1969 0.0035 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3634 -0.8915 -0.5112 33 1 1.6584 2.1327 0.0007 34 1 4.1205 2.1326 -0.0081 35 1 6.1418 0.0040 1.0282 36 1 6.1422 -0.8920 -0.5098 37 1 6.1422 0.8879 -0.5168 38 1 3.7189 -3.0338 -1.9862 39 1 5.2586 -2.1446 -1.9040 40 1 5.1945 -3.8581 -1.4273 41 1 2.5474 -3.4736 0.6182 42 1 2.3854 -5.4955 1.7769 43 1 5.4677 -6.9014 1.0745 44 1 6.5501 -8.7023 2.3221 45 1 7.3074 -11.3425 2.4201 46 1 3.6365 -8.2448 5.4670 47 1 2.5779 -6.4388 4.2063 48 1 1.6581 -2.1322 0.0059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225536048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = 44.061006 kcal Electronic energy + Delta-G solvation = -27698.188627 eV Core-core repulsion = 24035.828075 eV Total energy + Delta-G solvation = -3662.360553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.32326 -40.40391 -38.88707 -37.03986 -35.42279 -34.74139 -32.74897 -31.37031 -30.88339 -30.35353 -30.05869 -26.98210 -25.86735 -25.29407 -24.71374 -23.22183 -22.53515 -22.33405 -21.17957 -19.46980 -19.24185 -18.74111 -17.29513 -17.04290 -16.92797 -16.35526 -16.09907 -15.97066 -15.70139 -15.33260 -15.30425 -14.80591 -14.55767 -14.45639 -14.13464 -14.01560 -13.86797 -13.77369 -13.67025 -13.39601 -13.17036 -12.97420 -12.90018 -12.74211 -12.68719 -12.58403 -12.35651 -12.21965 -12.17315 -11.89818 -11.83473 -11.63558 -11.41383 -10.79489 -10.57918 -9.78618 -9.54256 -9.35186 -9.27694 -8.91946 -8.76651 -7.97378 -6.22922 0.25475 0.32967 0.40428 0.94387 1.08581 1.30047 1.36324 1.47917 1.57694 1.71527 2.15261 2.58593 2.66913 2.75236 3.46844 3.77610 3.81792 3.92351 4.08337 4.19797 4.26130 4.33419 4.41550 4.46107 4.58182 4.61051 4.70289 4.73130 4.77366 4.80642 4.83493 4.88005 4.91768 5.04962 5.10786 5.13431 5.17225 5.19269 5.23463 5.35378 5.38587 5.42589 5.54344 5.64723 5.66185 5.72912 5.80970 6.02780 6.06883 6.14661 6.22214 6.34748 6.59088 6.68582 6.90498 7.07883 8.08259 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.002157 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.592808 B =12976.417033 C =13678.144679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.124 4.124 7 C -0.098 4.098 8 C 0.188 3.812 9 H 0.105 0.895 10 C -0.150 4.150 11 N -0.666 5.666 12 C 0.573 3.427 13 S -0.729 6.729 14 N -0.578 5.578 15 C -0.052 4.052 16 C -0.028 4.028 17 C -0.226 4.226 18 C 0.091 3.909 19 C -0.488 4.488 20 H 0.085 0.915 21 C 0.053 3.947 22 N -0.775 5.775 23 Si 0.968 3.032 24 H -0.251 1.251 25 H -0.266 1.266 26 H -0.260 1.260 27 C -0.256 4.256 28 C -0.063 4.063 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.409 0.591 42 H 0.414 0.586 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.296 0.704 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 21.226 -8.475 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.134 4.134 5 C -0.088 4.088 6 C -0.180 4.180 7 C -0.099 4.099 8 C 0.083 3.917 9 H 0.123 0.877 10 C -0.208 4.208 11 N -0.299 5.299 12 C 0.210 3.790 13 S -0.601 6.601 14 N -0.199 5.199 15 C -0.145 4.145 16 C -0.050 4.050 17 C -0.247 4.247 18 C 0.088 3.912 19 C -0.514 4.514 20 H 0.103 0.897 21 C -0.170 4.170 22 N -0.396 5.396 23 Si 0.788 3.212 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.183 1.183 27 C -0.277 4.277 28 C -0.083 4.083 29 C -0.144 4.144 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.251 0.749 42 H 0.254 0.746 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.143 0.857 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.293 21.053 -8.690 24.994 hybrid contribution -0.725 -0.546 0.216 0.933 sum -11.018 20.507 -8.473 24.773 Atomic orbital electron populations 1.20838 0.89439 1.03758 1.02989 1.20160 0.97369 0.92735 0.99145 1.21361 0.94209 0.98406 0.99966 1.21287 0.94609 0.97680 0.99838 1.19854 0.96693 0.92439 0.99851 1.20929 0.90623 1.03724 1.02747 1.19688 0.94120 0.93347 1.02696 1.20150 0.94166 0.82400 0.94965 0.87728 1.22071 1.02436 1.02464 0.93868 1.44942 1.10410 1.20872 1.53634 1.21798 0.94255 0.81461 0.81525 1.93452 0.94408 1.89850 1.82367 1.41551 1.09099 1.21403 1.47827 1.16701 1.04067 0.97741 0.95980 1.20590 0.93671 0.91561 0.99190 1.20617 1.03400 1.02006 0.98633 1.17945 0.89983 0.91749 0.91519 1.19852 1.19021 1.12680 0.99876 0.89695 1.26900 1.01481 0.93074 0.95537 1.70000 1.32999 1.21976 1.14672 0.85414 0.76741 0.79544 0.79523 1.17498 1.19036 1.18333 1.20530 1.00500 1.04315 1.02311 1.20268 0.99359 0.96962 0.91719 1.20877 0.92888 0.98506 1.02085 0.90624 0.90296 0.90944 0.83885 0.83931 0.91394 0.91590 0.89530 0.91422 0.89815 0.92968 0.74934 0.74625 0.87599 0.89254 0.89251 0.87653 0.85699 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.24 0.71 -0.33 16 2 C -0.09 -1.34 5.88 -19.87 -0.12 -1.46 16 3 C -0.12 -1.65 9.70 22.27 0.22 -1.44 16 4 C -0.12 -1.75 9.70 22.27 0.22 -1.53 16 5 C -0.09 -1.62 5.88 -19.86 -0.12 -1.73 16 6 C -0.12 -2.14 9.21 71.24 0.66 -1.49 16 7 C -0.10 -1.91 5.04 -19.87 -0.10 -2.01 16 8 C 0.19 4.40 1.88 44.25 0.08 4.49 16 9 H 0.11 3.09 5.39 -2.39 -0.01 3.08 16 10 C -0.15 -3.32 9.31 71.98 0.67 -2.65 16 11 N -0.67 -15.86 4.97 -333.14 -1.66 -17.52 16 12 C 0.57 19.29 7.83 179.05 1.40 20.69 16 13 S -0.73 -32.69 23.85 -56.49 -1.35 -34.04 16 14 N -0.58 -18.94 5.28 -189.60 -1.00 -19.94 16 15 C -0.05 -2.23 5.96 38.60 0.23 -2.00 16 16 C -0.03 -1.44 7.77 22.14 0.17 -1.26 16 17 C -0.23 -12.64 8.85 22.48 0.20 -12.44 16 18 C 0.09 5.01 5.68 -21.27 -0.12 4.89 16 19 C -0.49 -26.35 8.92 23.38 0.21 -26.14 16 20 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 21 C 0.05 2.68 4.74 85.23 0.40 3.08 16 22 N -0.78 -40.25 11.52 21.82 0.25 -40.00 16 23 Si 0.97 37.98 29.69 68.60 2.04 40.02 16 24 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 27 C -0.26 -12.47 9.74 22.48 0.22 -12.25 16 28 C -0.06 -2.67 9.90 22.14 0.22 -2.45 16 29 C -0.13 -2.04 8.89 22.27 0.20 -1.85 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 32 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.26 5.62 -2.39 -0.01 1.24 16 37 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.62 7.14 -2.39 -0.02 1.60 16 40 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16 41 H 0.41 6.86 6.34 -92.71 -0.59 6.27 16 42 H 0.41 9.67 8.84 -92.71 -0.82 8.85 16 43 H 0.11 5.53 6.00 -9.80 -0.06 5.47 16 44 H 0.09 5.29 6.02 -2.91 -0.02 5.27 16 45 H 0.30 13.70 8.30 -92.71 -0.77 12.93 16 46 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 47 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 48 H 0.13 1.62 6.17 -2.91 -0.02 1.60 16 Total: -1.00 -70.79 398.14 3.19 -67.60 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.45 Total: 41.76 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 5.35 Total: -37.88 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.41 Total: -77.46 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.04 Total: 40.02 kcal Atomic # 16 Polarization: -32.69 SS G_CDS: -1.35 Total: -34.04 kcal Total: -70.79 3.19 -67.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225536048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.659 kcal (2) G-P(sol) polarization free energy of solvation -70.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds