Wall clock time and date at job start Tue Mar 31 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05481 * 359.97267 * 5 4 3 7 7 C 1.38247 * 120.11155 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.97002 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47171 * 90.00138 * 8 7 6 10 10 N 1.28312 * 118.73858 * 269.72938 * 9 8 7 11 11 C 1.32661 * 121.98507 * 179.75536 * 10 9 8 12 12 C 1.41188 * 120.29963 * 180.28762 * 11 10 9 13 13 H 1.07999 * 120.00250 * 180.22401 * 12 11 10 14 14 C 1.39951 * 120.00025 * 0.22183 * 12 11 10 15 15 N 1.30812 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00438 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47220 * 59.99735 * 16 14 12 18 18 H 1.48504 * 109.47519 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46998 * 299.99995 * 16 14 12 20 20 C 1.46783 * 119.40385 * 0.50794 * 11 10 9 21 21 C 1.36004 * 117.71613 * 359.75698 * 20 11 10 22 22 C 1.50701 * 120.97915 * 179.97438 * 21 20 11 23 23 F 1.39895 * 109.47525 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47039 * 120.02495 * 22 21 20 25 25 F 1.39908 * 109.47083 * 240.02089 * 22 21 20 26 26 C 1.34380 * 118.73004 * 89.99778 * 9 8 7 27 27 O 1.21934 * 119.83857 * 359.95860 * 26 9 8 28 28 C 1.38165 * 120.05172 * 359.74987 * 7 6 5 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 31 31 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 32 32 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 33 33 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94121 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47414 * 210.00112 * 8 7 6 36 36 H 1.09007 * 109.47354 * 330.00385 * 8 7 6 37 37 H 0.97000 * 120.00429 * 180.02562 * 15 14 12 38 38 H 1.08006 * 121.13996 * 179.73248 * 20 11 10 39 39 H 1.08001 * 120.02453 * 180.24915 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5171 0.0011 8 6 5.5607 2.5982 0.0012 9 7 6.0483 2.6239 1.3824 10 7 6.1981 3.7584 1.9628 11 6 6.6307 3.8564 3.2130 12 6 6.7767 5.1233 3.8190 13 1 7.1328 5.1977 4.8359 14 6 6.4602 6.2826 3.1019 15 7 6.0285 6.1926 1.8703 16 14 6.6526 7.9588 3.9038 17 1 8.0697 8.1580 4.3003 18 1 6.2541 9.0169 2.9411 19 1 5.7865 8.0339 5.1077 20 6 6.9608 2.6362 3.9591 21 6 6.8002 1.4440 3.3247 22 6 7.1176 0.1458 4.0212 23 9 7.5637 0.4104 5.3204 24 9 5.9666 -0.6476 4.0759 25 9 8.1171 -0.5309 3.3136 26 6 6.3267 1.4585 1.9908 27 8 6.1703 0.4085 1.3911 28 6 3.4310 1.2849 0.0053 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2127 2.3204 0.0002 33 1 1.3339 4.5114 0.0011 34 1 3.7921 4.6381 0.0025 35 1 5.9715 1.7293 -0.5130 36 1 5.8756 3.5068 -0.5122 37 1 5.8094 6.9962 1.3732 38 1 7.3194 2.6836 4.9768 39 1 4.0205 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225553043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:38 Heat of formation + Delta-G solvation = -132.468325 kcal Electronic energy + Delta-G solvation = -31918.127738 eV Core-core repulsion = 26991.836499 eV Total energy + Delta-G solvation = -4926.291239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.59426 -47.16447 -46.99374 -40.60038 -39.74275 -37.33434 -36.46389 -34.61808 -33.40824 -31.58439 -30.31470 -29.87031 -27.49492 -26.96303 -25.86985 -25.33035 -22.69216 -22.26937 -21.85459 -20.73872 -18.67269 -18.27435 -17.93155 -17.62343 -17.33408 -16.03201 -15.77846 -15.73624 -15.60453 -15.55730 -15.37650 -15.15427 -14.81656 -13.97236 -13.91188 -13.80140 -13.52493 -13.47358 -13.30278 -13.21924 -13.17417 -12.85877 -12.54550 -12.35058 -12.03336 -11.97994 -11.73533 -11.56018 -11.33807 -11.27617 -11.08189 -10.94162 -10.86393 -10.60518 -10.39437 -9.93612 -9.68133 -9.32818 -8.66933 -8.22208 -7.90666 -7.56539 -6.70589 -4.70997 1.35915 1.54262 1.78520 2.80398 3.01661 3.02699 3.12775 3.15294 3.41098 3.59199 3.83641 4.15378 4.23579 4.34537 4.68398 4.94550 4.95603 5.01961 5.12752 5.17427 5.19040 5.28664 5.40712 5.45318 5.51454 5.71400 5.74148 5.82848 6.02457 6.12498 6.14231 6.25448 6.36389 6.56318 6.75163 6.85498 6.90220 7.02183 7.06991 7.18116 7.62497 7.95933 8.17306 8.57858 8.79778 10.01594 10.16411 Molecular weight = 354.10amu Principal moments of inertia in cm(-1) A = 0.007262 B = 0.005175 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.873147 B = 5409.419217 C = 8378.843433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.111 3.889 4 C -0.206 4.206 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.064 4.064 8 C 0.171 3.829 9 N -0.330 5.330 10 N -0.276 5.276 11 C 0.174 3.826 12 C -0.421 4.421 13 H 0.092 0.908 14 C 0.068 3.932 15 N -0.734 5.734 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.266 1.266 20 C 0.006 3.994 21 C -0.297 4.297 22 C 0.534 3.466 23 F -0.185 7.185 24 F -0.176 7.176 25 F -0.176 7.176 26 C 0.473 3.527 27 O -0.582 6.582 28 C -0.123 4.123 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.277 0.723 38 H 0.141 0.859 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -2.099 -1.869 6.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.066 3.934 4 C -0.225 4.225 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.065 4.065 8 C 0.050 3.950 9 N -0.143 5.143 10 N -0.107 5.107 11 C 0.025 3.975 12 C -0.462 4.462 13 H 0.110 0.890 14 C -0.155 4.155 15 N -0.360 5.360 16 Si 0.737 3.263 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.024 4.024 21 C -0.308 4.308 22 C 0.480 3.520 23 F -0.166 7.166 24 F -0.157 7.157 25 F -0.158 7.158 26 C 0.270 3.730 27 O -0.466 6.466 28 C -0.142 4.142 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.368 -2.378 -3.186 7.507 hybrid contribution 0.020 0.186 1.319 1.332 sum -6.348 -2.193 -1.867 6.971 Atomic orbital electron populations 1.22978 0.79079 1.03470 1.01034 1.86081 1.20792 1.27198 1.89155 1.18957 0.92275 0.83925 0.98230 1.21172 0.99475 0.92601 1.09227 1.20882 0.94717 0.96639 0.98922 1.21170 0.93356 0.98840 1.00015 1.19872 0.95586 0.92336 0.98686 1.20392 0.89336 1.04531 0.80765 1.46241 1.51427 1.03161 1.13487 1.73065 1.23936 1.02754 1.10932 1.20186 0.97401 0.91737 0.88185 1.19017 1.39383 0.87815 0.99958 0.89008 1.25797 0.94037 1.00941 0.94722 1.69954 1.27325 1.30503 1.08265 0.86278 0.79758 0.80515 0.79722 1.18999 1.20296 1.19045 1.23997 0.86628 0.92252 0.99483 1.21120 1.18015 0.93124 0.98493 1.17653 0.74336 0.84395 0.75647 1.93115 1.89751 1.94043 1.39714 1.93182 1.50077 1.76269 1.96188 1.93177 1.61984 1.82044 1.78566 1.16958 0.83270 0.85578 0.87223 1.90817 1.58978 1.30285 1.66531 1.20539 0.91233 0.98901 1.03570 0.88601 0.92934 0.92973 0.86057 0.86044 0.84615 0.88485 0.87736 0.91237 0.84162 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.02 10.50 -19.44 -0.20 -5.23 16 3 C 0.11 1.88 6.69 -39.22 -0.26 1.62 16 4 C -0.21 -3.07 9.04 -39.43 -0.36 -3.42 16 5 C -0.09 -1.43 10.04 -39.61 -0.40 -1.82 16 6 C -0.12 -2.00 9.70 -39.56 -0.38 -2.38 16 7 C -0.06 -1.18 5.45 -104.65 -0.57 -1.75 16 8 C 0.17 3.30 5.64 -5.20 -0.03 3.27 16 9 N -0.33 -7.45 3.20 -64.50 -0.21 -7.66 16 10 N -0.28 -6.55 8.48 33.28 0.28 -6.27 16 11 C 0.17 4.04 6.78 -82.94 -0.56 3.48 16 12 C -0.42 -9.51 9.19 -37.82 -0.35 -9.86 16 13 H 0.09 1.88 7.85 -52.49 -0.41 1.46 16 14 C 0.07 1.50 5.50 -17.34 -0.10 1.41 16 15 N -0.73 -16.74 11.50 55.55 0.64 -16.10 16 16 Si 0.91 16.53 29.56 -169.99 -5.02 11.51 16 17 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.28 -5.01 7.11 56.52 0.40 -4.60 16 19 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 20 C 0.01 0.12 9.53 -36.93 -0.35 -0.24 16 21 C -0.30 -6.46 5.40 -104.16 -0.56 -7.02 16 22 C 0.53 10.74 3.04 36.01 0.11 10.85 16 23 F -0.18 -3.28 16.09 2.25 0.04 -3.25 16 24 F -0.18 -3.66 17.06 2.25 0.04 -3.62 16 25 F -0.18 -3.60 17.06 2.25 0.04 -3.57 16 26 C 0.47 11.11 7.40 -15.17 -0.11 10.99 16 27 O -0.58 -14.32 14.89 4.98 0.07 -14.25 16 28 C -0.12 -2.31 9.56 -39.44 -0.38 -2.69 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.10 1.80 7.25 -51.93 -0.38 1.42 16 36 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 37 H 0.28 5.79 8.30 -40.82 -0.34 5.45 16 38 H 0.14 2.46 7.28 -52.48 -0.38 2.07 16 39 H 0.14 2.75 7.37 -52.49 -0.39 2.36 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -27.96 354.41 -5.80 -33.76 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.51 Total: 5.61 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.31 Total: 3.72 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.71 Total: -30.03 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.13 Total: -19.47 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 0.11 Total: -10.43 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.02 Total: 11.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.96 -5.80 -33.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225553043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.712 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds