Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 120.00250 * 2 1 4 4 C 1.52997 * 109.47133 * 270.00215 * 3 2 1 5 5 N 1.46506 * 109.47039 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00113 * 180.02562 * 5 4 3 7 7 S 1.71202 * 119.99904 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00188 * 180.02562 * 6 5 4 9 9 C 1.39140 * 119.99868 * 185.52011 * 8 6 5 10 10 C 1.39506 * 119.83808 * 42.14833 * 9 8 6 11 11 C 1.36359 * 120.16809 * 180.29823 * 10 9 8 12 12 C 1.40879 * 119.82778 * 359.44981 * 11 10 9 13 13 C 1.41145 * 120.16162 * 180.25390 * 12 11 10 14 14 H 1.07993 * 120.00091 * 205.11841 * 13 12 11 15 15 C 1.39890 * 119.99636 * 25.11431 * 13 12 11 16 16 N 1.30876 * 120.00177 * 17.73033 * 15 13 12 17 17 Si 1.86802 * 119.99504 * 197.72622 * 15 13 12 18 18 H 1.48499 * 109.47227 * 94.74270 * 17 15 13 19 19 H 1.48504 * 109.46852 * 214.74209 * 17 15 13 20 20 H 1.48495 * 109.47154 * 334.73812 * 17 15 13 21 21 C 1.40882 * 119.67811 * 0.54569 * 12 11 10 22 22 C 1.36352 * 119.82913 * 359.73032 * 21 12 11 23 23 C 1.39675 * 120.00095 * 180.02562 * 2 1 3 24 24 C 1.38911 * 120.07369 * 179.72005 * 23 2 1 25 25 C 1.38108 * 119.92290 * 179.76510 * 24 23 2 26 26 C 1.38284 * 120.07301 * 0.51891 * 25 24 23 27 27 C 1.38288 * 120.14947 * 359.73193 * 26 25 24 28 28 C 1.38104 * 120.07556 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46959 * 90.00052 * 1 2 3 30 30 H 1.09001 * 109.47151 * 209.99655 * 1 2 3 31 31 H 1.09000 * 109.47255 * 329.99869 * 1 2 3 32 32 H 1.09000 * 109.47222 * 149.99710 * 3 2 1 33 33 H 1.09002 * 109.46471 * 30.00119 * 3 2 1 34 34 H 1.09006 * 109.47273 * 60.00036 * 4 3 2 35 35 H 1.08993 * 109.47447 * 299.99506 * 4 3 2 36 36 H 0.96998 * 119.99959 * 359.97438 * 5 4 3 37 37 H 0.97003 * 120.00098 * 5.51972 * 8 6 5 38 38 H 1.08000 * 119.91647 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.08756 * 179.71929 * 11 10 9 40 40 H 0.96995 * 120.00288 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.08122 * 179.71464 * 21 12 11 42 42 H 1.07994 * 119.91994 * 179.97438 * 22 21 12 43 43 H 1.07996 * 120.04080 * 0.02562 * 24 23 2 44 44 H 1.08001 * 119.96405 * 180.25013 * 25 24 23 45 45 H 1.08000 * 119.92659 * 179.72550 * 26 25 24 46 46 H 1.08007 * 119.95892 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.03595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1846 2.9795 -1.4424 6 6 3.5210 3.5634 -2.6096 7 16 3.0923 2.8226 -4.0923 8 7 4.1949 4.7306 -2.6096 9 6 4.4417 5.3913 -3.8090 10 6 3.4388 5.4739 -4.7752 11 6 3.6754 6.1146 -5.9554 12 6 4.9327 6.7040 -6.1930 13 6 5.1835 7.3735 -7.4100 14 1 6.1950 7.4665 -7.7767 15 6 4.1217 7.9167 -8.1411 16 7 2.9651 8.1192 -7.5630 17 14 4.3548 8.3529 -9.9424 18 1 3.9003 7.2205 -10.7888 19 1 3.5579 9.5636 -10.2656 20 1 5.7915 8.6215 -10.2048 21 6 5.9406 6.6166 -5.2125 22 6 5.6912 5.9678 -4.0394 23 6 2.1634 -1.2096 -0.0005 24 6 3.5525 -1.2114 -0.0064 25 6 4.2399 -2.4092 -0.0020 26 6 3.5469 -3.6059 -0.0026 27 6 2.1640 -3.6077 -0.0020 28 6 1.4704 -2.4135 -0.0014 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.1500 1.1384 0.5139 33 1 1.6084 2.0283 0.5139 34 1 1.5001 1.8408 -1.9563 35 1 3.0416 0.9509 -1.9563 36 1 3.4265 3.3998 -0.6024 37 1 4.5078 5.1100 -1.7735 38 1 2.4740 5.0254 -4.5897 39 1 2.8996 6.1738 -6.7043 40 1 2.2290 8.4962 -8.0699 41 1 6.9083 7.0621 -5.3897 42 1 6.4628 5.8995 -3.2870 43 1 4.0943 -0.2772 -0.0102 44 1 5.3199 -2.4113 -0.0025 45 1 4.0869 -4.5412 -0.0037 46 1 1.6259 -4.5441 -0.0029 47 1 0.3904 -2.4156 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225570672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = 84.588215 kcal Electronic energy + Delta-G solvation = -27100.107356 eV Core-core repulsion = 23374.078284 eV Total energy + Delta-G solvation = -3726.029072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.96262 -39.13509 -37.61150 -36.54861 -34.94891 -33.21919 -31.45415 -30.54071 -29.62624 -29.53768 -28.71253 -26.20136 -24.93308 -23.57190 -23.40573 -22.32210 -21.20868 -20.99828 -20.44172 -18.23992 -17.84301 -17.36005 -17.35806 -16.11312 -15.81492 -15.45798 -15.22002 -15.20841 -15.02924 -14.48789 -14.30908 -13.98913 -13.87833 -13.75085 -13.51787 -12.83406 -12.79462 -12.62312 -12.45074 -12.32686 -12.09770 -11.88546 -11.66942 -11.62395 -11.26590 -11.13687 -11.02589 -10.89545 -10.59416 -10.55286 -10.15622 -9.86335 -9.56701 -9.22411 -9.11084 -9.04056 -7.72433 -7.59727 -7.45982 -7.04063 -6.82656 -6.30601 -4.35875 1.25321 1.40566 1.69477 2.29730 2.70039 2.80161 3.07431 3.10871 3.12934 3.19139 3.28319 3.71082 3.90742 3.96410 4.42452 4.55683 4.59005 4.60070 4.77600 4.89934 4.94390 5.03105 5.19049 5.27899 5.34139 5.44537 5.48525 5.60709 5.67648 5.78615 5.82044 6.02461 6.07137 6.21753 6.30277 6.35609 6.45807 6.54155 6.63460 6.90721 6.96587 7.01126 7.09232 7.19331 7.20660 7.28340 7.57647 7.65134 7.91921 8.04434 8.17689 8.25548 8.61925 8.84512 8.95080 10.11750 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.020124 B = 0.001790 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.042593 B =15637.234854 C =15708.965720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.626 5.626 3 C 0.114 3.886 4 C 0.112 3.888 5 N -0.700 5.700 6 C 0.544 3.456 7 S -0.638 6.638 8 N -0.590 5.590 9 C -0.038 4.038 10 C -0.037 4.037 11 C -0.163 4.163 12 C 0.120 3.880 13 C -0.450 4.450 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.782 5.782 17 Si 0.910 3.090 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.226 4.226 22 C -0.080 4.080 23 C 0.215 3.785 24 C -0.194 4.194 25 C -0.072 4.072 26 C -0.179 4.179 27 C -0.075 4.075 28 C -0.195 4.195 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -14.201 18.978 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.337 5.337 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.333 5.333 6 C 0.186 3.814 7 S -0.510 6.510 8 N -0.209 5.209 9 C -0.131 4.131 10 C -0.059 4.059 11 C -0.184 4.184 12 C 0.116 3.884 13 C -0.479 4.479 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.406 5.406 17 Si 0.734 3.266 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.246 4.246 22 C -0.101 4.101 23 C 0.114 3.886 24 C -0.216 4.216 25 C -0.091 4.091 26 C -0.199 4.199 27 C -0.093 4.093 28 C -0.218 4.218 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.225 0.775 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.419 -14.508 17.880 23.446 hybrid contribution 0.539 1.015 0.718 1.356 sum -3.880 -13.493 18.598 23.302 Atomic orbital electron populations 1.21702 0.79059 1.02604 1.01747 1.46165 1.04937 1.02259 1.80354 1.21533 0.97995 0.85866 0.95718 1.22025 0.98105 0.83949 0.97335 1.44622 1.58445 1.24828 1.05446 1.22349 0.83991 0.83416 0.91648 1.93340 1.72049 1.68252 1.17371 1.41980 1.51149 1.17622 1.10155 1.16869 0.96392 1.11003 0.88812 1.20450 0.97134 0.94733 0.93537 1.20856 0.99003 1.01385 0.97133 1.17727 0.91291 0.87955 0.91382 1.19648 0.94556 1.29866 1.03814 0.90152 1.25972 0.94496 0.93563 1.00425 1.69847 1.02869 1.30498 1.37422 0.86268 0.79690 0.78603 0.82031 1.19127 1.20240 1.18490 1.20467 1.00155 1.09381 0.94618 1.19974 0.92919 0.99882 0.97306 1.17820 0.91204 0.85534 0.94004 1.20713 0.92134 0.98779 1.09944 1.20913 0.99550 0.91991 0.96652 1.20923 0.94305 0.97854 1.06816 1.20890 0.94256 0.97164 0.97025 1.20680 0.99636 0.91105 1.10349 0.92865 0.91182 0.91434 0.90153 0.90197 0.89766 0.89580 0.77470 0.77519 0.87393 0.86235 0.90648 0.88578 0.89486 0.86173 0.86229 0.86557 0.86292 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.23 59.85 0.61 1.21 16 2 N -0.63 -5.25 3.01 -179.62 -0.54 -5.79 16 3 C 0.11 0.85 5.31 -4.04 -0.02 0.83 16 4 C 0.11 1.22 5.45 -4.04 -0.02 1.20 16 5 N -0.70 -7.93 5.56 -62.03 -0.34 -8.27 16 6 C 0.54 9.13 7.73 -86.92 -0.67 8.46 16 7 S -0.64 -14.17 25.05 -107.50 -2.69 -16.86 16 8 N -0.59 -9.85 5.29 -11.28 -0.06 -9.91 16 9 C -0.04 -0.82 5.91 -83.59 -0.49 -1.32 16 10 C -0.04 -0.91 7.77 -39.79 -0.31 -1.22 16 11 C -0.16 -4.34 8.63 -39.26 -0.34 -4.68 16 12 C 0.12 3.17 5.57 -106.79 -0.59 2.57 16 13 C -0.45 -11.79 9.03 -37.86 -0.34 -12.13 16 14 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 15 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 16 N -0.78 -20.01 10.98 55.54 0.61 -19.40 16 17 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.23 -5.41 9.74 -39.26 -0.38 -5.79 16 22 C -0.08 -1.73 9.90 -39.78 -0.39 -2.12 16 23 C 0.22 2.10 6.55 -83.79 -0.55 1.55 16 24 C -0.19 -1.91 9.20 -39.38 -0.36 -2.28 16 25 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 26 C -0.18 -1.60 10.04 -39.55 -0.40 -1.99 16 27 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 28 C -0.20 -1.78 9.21 -39.38 -0.36 -2.15 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 6.20 -51.93 -0.32 0.06 16 31 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 32 H 0.08 0.53 6.21 -51.93 -0.32 0.21 16 33 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 34 H 0.08 1.08 7.99 -51.93 -0.41 0.67 16 35 H 0.09 1.16 7.99 -51.93 -0.42 0.75 16 36 H 0.39 2.95 8.49 -40.82 -0.35 2.60 16 37 H 0.39 4.87 8.84 -40.82 -0.36 4.51 16 38 H 0.11 2.67 6.27 -49.91 -0.31 2.36 16 39 H 0.12 3.33 6.19 -52.49 -0.32 3.00 16 40 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.12 1.09 6.15 -52.49 -0.32 0.77 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.12 0.91 6.14 -52.49 -0.32 0.59 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -32.49 397.20 -13.96 -46.45 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.37 Total: 12.46 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -5.51 Total: -18.19 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.33 Total: -43.38 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -14.17 SS G_CDS: -2.69 Total: -16.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.49 -13.96 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225570672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.040 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds