Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99634 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46696 * 90.00211 * 9 7 5 11 11 H 1.48503 * 109.47125 * 210.00238 * 9 7 5 12 12 H 1.48496 * 109.46999 * 330.00355 * 9 7 5 13 13 S 1.81396 * 109.47360 * 239.99820 * 2 1 3 14 14 C 1.76202 * 103.00049 * 65.00148 * 13 2 1 15 15 N 1.29645 * 125.41307 * 359.69615 * 14 13 2 16 16 N 1.37753 * 115.60804 * 179.80093 * 15 14 13 17 17 C 1.29585 * 115.62552 * 0.49798 * 16 15 14 18 18 N 1.38993 * 125.40608 * 179.76547 * 17 16 15 19 19 C 1.46509 * 119.99956 * 359.97213 * 18 17 16 20 20 C 1.52998 * 109.46838 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46939 * 180.02562 * 20 19 18 22 22 C 1.33385 * 125.20336 * 90.00217 * 21 20 19 23 23 C 1.38421 * 114.92382 * 179.97438 * 22 21 20 24 24 C 1.33385 * 114.91964 * 359.97438 * 23 22 21 25 25 S 1.75881 * 125.20401 * 269.69829 * 21 20 19 26 26 S 1.76030 * 109.18746 * 359.74135 * 17 16 15 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 0.97001 * 119.99767 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00386 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47201 * 300.00595 * 19 18 17 35 35 H 1.09000 * 109.46632 * 60.00371 * 19 18 17 36 36 H 1.08998 * 109.47680 * 300.00264 * 20 19 18 37 37 H 1.09000 * 109.47237 * 60.00704 * 20 19 18 38 38 H 1.08003 * 122.53643 * 359.95654 * 22 21 20 39 39 H 1.07998 * 122.53824 * 180.02562 * 23 22 21 40 40 H 1.07998 * 125.20364 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2991 9 14 6.0922 -1.0622 2.4363 10 1 6.4709 0.1600 3.1899 11 1 6.6443 -2.2578 3.1225 12 1 6.6413 -0.9844 1.0588 13 16 2.1347 -0.8551 -1.4810 14 6 1.5828 0.1846 -2.7922 15 7 0.9048 1.2801 -2.6477 16 7 0.5816 1.9385 -3.8137 17 6 0.9877 1.3739 -4.9071 18 7 0.7710 1.8580 -6.1919 19 6 0.0278 3.1051 -6.3892 20 6 -0.0686 3.4100 -7.8854 21 6 -0.8325 4.6932 -8.0883 22 6 -0.2907 5.9111 -8.1372 23 6 -1.1921 6.9430 -8.3335 24 6 -2.4658 6.5632 -8.4446 25 16 -2.5738 4.8132 -8.3044 26 16 1.8578 -0.1030 -4.5070 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 4.0608 -2.2459 4.0341 33 1 1.1117 1.3701 -6.9579 34 1 -0.9748 3.0001 -5.9747 35 1 0.5461 3.9205 -5.8845 36 1 0.9338 3.5148 -8.3003 37 1 -0.5871 2.5945 -8.3897 38 1 0.7709 6.0792 -8.0313 39 1 -0.8870 7.9773 -8.3931 40 1 -3.3025 7.2280 -8.6007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252490796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = 84.402586 kcal Electronic energy + Delta-G solvation = -22274.625753 eV Core-core repulsion = 18855.119265 eV Total energy + Delta-G solvation = -3419.506488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 355.054 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.28855 -38.48060 -36.68864 -34.60599 -33.14478 -32.08513 -30.38681 -28.14188 -27.43575 -25.14894 -24.19701 -23.32805 -22.85097 -20.87434 -20.53116 -19.74016 -19.24942 -17.62457 -16.81264 -16.47730 -16.33945 -15.99719 -15.61075 -15.25865 -14.69176 -14.59845 -14.32007 -13.56117 -13.31468 -13.26273 -13.05757 -12.93559 -12.71649 -12.54420 -12.34658 -11.98918 -11.81680 -11.64228 -11.29921 -11.24928 -11.09272 -10.82949 -10.71729 -10.63051 -10.42242 -9.92418 -9.51216 -9.48096 -9.42958 -9.17496 -9.11327 -8.89066 -8.60407 -8.41671 -7.14975 -6.06640 -4.09280 0.48836 0.62384 1.01396 1.19441 1.26084 1.57278 1.81727 2.31295 2.51802 2.86510 2.93762 3.31527 3.37907 3.42428 4.27394 4.43015 4.43848 4.50375 4.67021 4.78638 4.92701 5.13816 5.18918 5.30848 5.33108 5.39243 5.52543 5.69745 5.70052 5.82290 5.85345 6.04695 6.10583 6.48189 6.50390 6.59057 6.74158 6.89680 7.47363 7.52264 7.90161 8.22570 8.25643 8.95480 9.55379 11.04215 Molecular weight = 355.05amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.001723 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.403614 B =16251.185521 C =16335.223665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 H 0.091 0.909 4 C 0.038 3.962 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S 0.036 5.964 14 C 0.030 3.970 15 N -0.270 5.270 16 N -0.354 5.354 17 C 0.305 3.695 18 N -0.695 5.695 19 C 0.141 3.859 20 C -0.059 4.059 21 C -0.175 4.175 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.213 4.213 25 S 0.103 5.897 26 S 0.042 5.958 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 11.194 -27.135 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 H 0.109 0.891 4 C -0.001 4.001 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.196 1.196 13 S 0.266 5.734 14 C -0.369 4.369 15 N -0.099 5.099 16 N -0.190 5.190 17 C -0.079 4.079 18 N -0.339 5.339 19 C 0.014 3.986 20 C -0.099 4.099 21 C -0.293 4.293 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.348 4.348 25 S 0.367 5.633 26 S 0.275 5.725 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.832 9.577 -26.794 30.446 hybrid contribution 1.621 2.142 -0.106 2.688 sum -9.211 11.718 -26.900 30.754 Atomic orbital electron populations 1.22100 0.94123 1.02098 1.02347 1.23816 0.97544 1.02776 0.94705 0.89080 1.19109 0.96577 0.95733 0.88724 1.21256 0.91438 1.35014 1.08623 0.91805 1.24986 0.98580 0.95013 0.95512 1.69952 1.35722 1.35445 1.11994 0.86577 0.85524 0.77542 0.78384 1.20638 1.21203 1.19579 1.86199 1.66211 1.27388 0.93612 1.31026 1.03225 1.01937 1.00709 1.75474 1.13986 1.04665 1.15771 1.75055 1.25824 1.25673 0.92485 1.25813 0.96914 0.93831 0.91296 1.43682 1.62048 1.26797 1.01348 1.21404 0.97014 0.85354 0.94802 1.20275 1.00388 0.93218 0.96023 1.24172 0.96591 0.98416 1.10133 1.20184 1.01453 0.91169 1.03466 1.20191 0.92192 1.00772 1.03340 1.25664 1.01193 0.97822 1.10171 1.84404 1.04589 1.03343 1.70976 1.85451 1.60189 1.25170 1.01696 0.92339 0.92140 0.91768 0.93973 0.95305 0.92839 0.74900 0.91100 0.90883 0.89044 0.89856 0.84125 0.84175 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.06 37.16 0.34 -2.36 16 2 C -0.06 -1.21 2.47 -26.73 -0.07 -1.27 16 3 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 4 C 0.04 0.93 4.45 -27.89 -0.12 0.80 16 5 C -0.52 -14.21 8.53 -34.44 -0.29 -14.51 16 6 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 S 0.04 0.70 20.90 -107.50 -2.25 -1.55 16 14 C 0.03 0.53 7.59 51.84 0.39 0.93 16 15 N -0.27 -5.11 9.94 31.11 0.31 -4.80 16 16 N -0.35 -6.08 11.68 30.85 0.36 -5.72 16 17 C 0.31 4.16 8.42 -87.39 -0.74 3.42 16 18 N -0.69 -6.37 5.73 -60.83 -0.35 -6.72 16 19 C 0.14 1.17 5.96 -4.04 -0.02 1.15 16 20 C -0.06 -0.33 5.82 -27.88 -0.16 -0.49 16 21 C -0.18 -1.22 5.76 -36.00 -0.21 -1.43 16 22 C -0.13 -0.91 10.05 -41.21 -0.41 -1.32 16 23 C -0.13 -0.88 10.18 -41.21 -0.42 -1.30 16 24 C -0.21 -1.38 11.23 29.04 0.33 -1.05 16 25 S 0.10 0.73 23.33 -107.50 -2.51 -1.78 16 26 S 0.04 0.58 23.39 -107.50 -2.51 -1.94 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.10 6.22 -51.93 -0.32 0.78 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.41 2.53 8.60 -40.82 -0.35 2.18 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -31.46 382.27 -12.24 -43.70 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.28 Total: -2.24 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.49 Total: -15.84 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 1.06 Total: -42.45 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -7.27 Total: -5.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.46 -12.24 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252490796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.104 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds