Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34721 * 116.99543 * 2 1 4 4 O 1.21471 * 120.00502 * 0.02562 * 3 2 1 5 5 C 1.47676 * 119.99687 * 180.02562 * 3 2 1 6 6 C 1.39688 * 120.14194 * 0.02562 * 5 3 2 7 7 C 1.37867 * 119.86133 * 179.97438 * 6 5 3 8 8 C 1.38511 * 120.14033 * 359.97438 * 7 6 5 9 9 Br 1.89096 * 119.85944 * 179.97438 * 8 7 6 10 10 C 1.38468 * 120.28043 * 359.74888 * 8 7 6 11 11 C 1.37915 * 120.13976 * 0.50750 * 10 8 7 12 12 C 1.50701 * 120.07049 * 179.76574 * 11 10 8 13 13 N 1.46897 * 109.47242 * 259.72345 * 12 11 10 14 14 C 1.46896 * 111.00390 * 66.04812 * 13 12 11 15 15 C 1.46906 * 111.00012 * 190.00433 * 13 12 11 16 16 H 1.08998 * 109.46389 * 299.99580 * 15 13 12 17 17 C 1.52997 * 109.47302 * 59.99745 * 15 13 12 18 18 C 1.50697 * 109.47180 * 180.02562 * 15 13 12 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47204 * 119.99883 * 22 20 18 25 25 H 1.48496 * 109.47191 * 240.00215 * 22 20 18 26 26 H 1.08994 * 109.47763 * 59.99639 * 1 2 3 27 27 H 1.09004 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47069 * 299.99189 * 1 2 3 29 29 H 1.07999 * 120.06355 * 359.97438 * 6 5 3 30 30 H 1.07997 * 119.92723 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.93120 * 180.24993 * 10 8 7 32 32 H 1.09009 * 109.46789 * 139.72626 * 12 11 10 33 33 H 1.09000 * 109.47165 * 19.72721 * 12 11 10 34 34 H 1.08994 * 109.47833 * 183.95153 * 14 13 12 35 35 H 1.09009 * 109.46755 * 303.95702 * 14 13 12 36 36 H 1.09001 * 109.47104 * 63.94533 * 14 13 12 37 37 H 1.09002 * 109.47153 * 180.02562 * 17 15 13 38 38 H 1.09001 * 109.46832 * 60.00356 * 17 15 13 39 39 H 1.09004 * 109.47261 * 300.00337 * 17 15 13 40 40 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5383 1.2777 -0.0006 6 6 4.3020 0.1081 -0.0017 7 6 5.6784 0.1871 -0.0027 8 6 6.3042 1.4228 -0.0033 9 35 8.1925 1.5218 -0.0040 10 6 5.5528 2.5859 -0.0080 11 6 4.1752 2.5204 -0.0016 12 6 3.3591 3.7873 -0.0014 13 7 2.8923 4.0689 1.3627 14 6 4.0199 4.3796 2.2514 15 6 1.9037 5.1555 1.3670 16 1 2.3557 6.0594 0.9587 17 6 0.7013 4.7545 0.5100 18 6 1.4495 5.4158 2.7801 19 1 1.8545 4.8321 3.5936 20 6 0.5171 6.3991 3.0345 21 7 0.0244 7.1101 2.0439 22 14 -0.0464 6.7213 4.7861 23 1 0.6533 5.7927 5.7099 24 1 0.2712 8.1233 5.1583 25 1 -1.5121 6.5034 4.8826 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 3.8152 -0.8559 -0.0017 30 1 6.2699 -0.7165 -0.0040 31 1 6.0466 3.5463 -0.0124 32 1 2.5002 3.6662 -0.6616 33 1 3.9740 4.6157 -0.3533 34 1 3.6540 4.5150 3.2691 35 1 4.7368 3.5587 2.2293 36 1 4.5059 5.2954 1.9151 37 1 -0.0320 5.5609 0.5129 38 1 0.2494 3.8505 0.9184 39 1 1.0302 4.5665 -0.5121 40 1 -0.6313 7.8021 2.2229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252509266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -34.070311 kcal Electronic energy + Delta-G solvation = -24248.632936 eV Core-core repulsion = 20689.719192 eV Total energy + Delta-G solvation = -3558.913744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53263 -38.93590 -36.89464 -35.93374 -33.14814 -32.54426 -31.40405 -29.85686 -28.88992 -27.67308 -26.78663 -24.63525 -23.82815 -23.08331 -21.68468 -20.57551 -19.21588 -17.77503 -16.76750 -16.27652 -16.08559 -15.66981 -15.38925 -15.05240 -14.64333 -14.11681 -13.83778 -13.59822 -13.29832 -13.19551 -12.79504 -12.60732 -12.23501 -11.99268 -11.84922 -11.77797 -11.30159 -11.14526 -10.96772 -10.91766 -10.64060 -10.55928 -10.50756 -10.40961 -10.01880 -9.85455 -9.82468 -9.51877 -9.01216 -8.87032 -8.66173 -8.33244 -7.07894 -5.94149 -3.97853 0.53923 1.19332 1.40581 2.68615 2.87479 3.32339 3.40009 3.44502 3.66681 4.45841 4.59525 4.71411 4.86949 5.08050 5.16545 5.25536 5.29610 5.37385 5.38189 5.48104 5.66463 5.76621 5.89494 5.99284 6.01647 6.16501 6.31120 6.35405 6.47996 6.58023 6.76266 6.83248 7.09940 7.31592 7.34803 7.68298 7.83752 7.89477 8.14285 8.39576 8.45416 8.68632 9.08598 9.66191 11.12434 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.003571 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.766153 B = 7839.437837 C = 9522.244199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.488 3.512 4 O -0.440 6.440 5 C -0.088 4.088 6 C -0.063 4.063 7 C -0.115 4.115 8 C -0.061 4.061 9 Br -0.052 7.052 10 C -0.100 4.100 11 C 0.007 3.993 12 C 0.074 3.926 13 N -0.517 5.517 14 C 0.033 3.967 15 C 0.217 3.783 16 H -0.006 1.006 17 C -0.117 4.117 18 C -0.499 4.499 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.285 1.285 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.007 0.993 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 -16.028 -7.270 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.330 3.670 4 O -0.324 6.324 5 C -0.090 4.090 6 C -0.082 4.082 7 C -0.135 4.135 8 C -0.140 4.140 9 Br 0.034 6.966 10 C -0.120 4.120 11 C 0.005 3.995 12 C -0.054 4.054 13 N -0.242 5.242 14 C -0.116 4.116 15 C 0.112 3.888 16 H 0.011 0.989 17 C -0.175 4.175 18 C -0.537 4.537 19 H 0.079 0.921 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.470 -15.919 -7.113 21.436 hybrid contribution -0.446 0.970 0.722 1.289 sum 12.024 -14.949 -6.391 20.221 Atomic orbital electron populations 1.23199 0.76165 1.03022 1.02981 1.86467 1.23386 1.33311 1.85319 1.21091 0.88909 0.81919 0.75098 1.91062 1.65897 1.34204 1.41239 1.19077 0.89978 0.93825 1.06121 1.21426 0.92948 0.98332 0.95460 1.20986 0.94582 0.96233 1.01712 1.22006 0.90258 0.96289 1.05479 1.96720 1.03241 1.99089 1.97537 1.21029 0.92856 0.97602 1.00558 1.20201 0.92703 0.95129 0.91485 1.21447 0.98127 0.90434 0.95389 1.62119 1.12062 1.45524 1.04482 1.22294 0.92851 0.96945 0.99495 1.19229 0.88005 0.85347 0.96256 0.98877 1.21713 0.99992 1.00932 0.94876 1.21187 1.23186 1.17057 0.92291 0.92053 1.24908 0.96325 0.96052 0.96941 1.69921 1.30297 1.22567 1.30432 0.86512 0.78463 0.77821 0.85013 1.19846 1.21220 1.21115 0.92025 0.88638 0.91482 0.83830 0.84555 0.84413 0.86841 0.95517 0.90618 0.94176 0.97067 0.90703 0.93829 0.97376 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -5.06 9.82 -40.55 -0.40 -5.46 16 3 C 0.49 7.96 7.87 34.58 0.27 8.23 16 4 O -0.44 -8.56 9.36 -19.24 -0.18 -8.75 16 5 C -0.09 -1.31 5.87 -104.98 -0.62 -1.92 16 6 C -0.06 -0.73 9.62 -39.18 -0.38 -1.11 16 7 C -0.12 -1.24 9.77 -39.62 -0.39 -1.62 16 8 C -0.06 -0.72 6.23 -39.40 -0.25 -0.97 16 9 Br -0.05 -0.54 33.69 -68.01 -2.29 -2.83 16 10 C -0.10 -1.36 8.37 -39.62 -0.33 -1.69 16 11 C 0.01 0.11 4.61 -104.22 -0.48 -0.37 16 12 C 0.07 1.39 3.99 -4.98 -0.02 1.37 16 13 N -0.52 -11.41 4.00 -237.73 -0.95 -12.36 16 14 C 0.03 0.67 9.01 60.06 0.54 1.21 16 15 C 0.22 5.63 2.06 -68.86 -0.14 5.49 16 16 H -0.01 -0.18 8.14 -51.93 -0.42 -0.60 16 17 C -0.12 -2.99 7.51 37.16 0.28 -2.71 16 18 C -0.50 -13.92 7.93 -34.44 -0.27 -14.20 16 19 H 0.06 1.72 6.39 -52.49 -0.34 1.39 16 20 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 21 N -0.89 -25.92 11.32 55.43 0.63 -25.30 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.14 1.37 7.61 -52.49 -0.40 0.97 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 1.78 8.03 -52.49 -0.42 1.35 16 32 H 0.11 2.29 3.93 -51.92 -0.20 2.09 16 33 H 0.03 0.49 7.98 -51.93 -0.41 0.08 16 34 H 0.08 1.65 6.23 -51.93 -0.32 1.33 16 35 H 0.04 0.71 6.43 -51.92 -0.33 0.38 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 2.09 6.07 -51.93 -0.32 1.77 16 38 H 0.04 1.13 6.76 -51.93 -0.35 0.78 16 39 H 0.01 0.18 5.94 -51.93 -0.31 -0.13 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -30.55 340.19 -8.97 -39.52 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.08 Total: -1.42 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.81 Total: -5.23 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.32 Total: -37.66 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.58 Total: -14.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.55 -8.97 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252509266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.450 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds