Wall clock time and date at job start Tue Mar 31 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39751 * 125.84283 * 2 1 4 4 C 1.36111 * 107.83102 * 179.97438 * 3 2 1 5 5 N 1.39471 * 126.21434 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00639 * 359.97080 * 5 4 3 7 7 O 1.21294 * 119.99590 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00611 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.47559 * 180.02562 * 8 6 5 10 10 C 1.38301 * 119.80865 * 90.00016 * 9 8 6 11 11 C 1.38396 * 119.82252 * 180.02562 * 10 9 8 12 12 C 1.37671 * 119.91650 * 0.02562 * 11 10 9 13 13 C 1.38902 * 120.81023 * 359.97438 * 12 11 10 14 14 C 1.37933 * 119.81321 * 269.73097 * 9 8 6 15 15 N 1.39523 * 110.23331 * 179.97438 * 13 12 11 16 16 C 1.34370 * 112.24590 * 0.02562 * 15 13 12 17 17 O 1.21291 * 126.44502 * 180.02562 * 16 15 13 18 18 C 1.51136 * 132.84975 * 179.97438 * 12 11 10 19 19 N 1.35252 * 107.56776 * 359.97438 * 4 3 2 20 20 C 1.46497 * 126.05073 * 180.26507 * 19 4 3 21 21 C 1.50702 * 109.47088 * 269.71889 * 20 19 4 22 22 H 1.07995 * 120.00047 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00180 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99822 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00228 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46428 * 90.00092 * 25 23 21 27 27 H 1.48500 * 109.47348 * 209.99926 * 25 23 21 28 28 H 1.48495 * 109.47311 * 330.00347 * 25 23 21 29 29 N 1.30848 * 125.83473 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47495 * 270.02244 * 1 2 3 31 31 H 1.09007 * 109.47041 * 30.02342 * 1 2 3 32 32 H 1.08996 * 109.47612 * 150.01846 * 1 2 3 33 33 H 1.08005 * 126.08594 * 359.91334 * 3 2 1 34 34 H 0.97002 * 119.99691 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47151 * 300.00572 * 8 6 5 36 36 H 1.09007 * 109.46994 * 60.00353 * 8 6 5 37 37 H 1.08000 * 120.08945 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.03902 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.93309 * 359.97438 * 14 9 8 40 40 H 0.97003 * 123.88127 * 180.02562 * 15 13 12 41 41 H 1.09001 * 110.51315 * 298.67454 * 18 12 11 42 42 H 1.08999 * 110.50993 * 61.38943 * 18 12 11 43 43 H 1.09008 * 109.46895 * 29.71218 * 20 19 4 44 44 H 1.08997 * 109.47576 * 149.71493 * 20 19 4 45 45 H 0.97005 * 119.99959 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 0.0006 5 7 4.7513 1.5273 0.0013 6 6 4.6158 2.8683 0.0008 7 8 3.5097 3.3660 0.0003 8 6 5.8384 3.7492 0.0022 9 6 5.4155 5.1956 0.0020 10 6 5.2214 5.8553 1.2019 11 6 4.8325 7.1835 1.2021 12 6 4.6399 7.8427 0.0089 13 6 4.8316 7.1913 -1.2028 14 6 5.2296 5.8556 -1.1949 15 7 4.5766 8.0608 -2.2638 16 6 4.2175 9.2853 -1.8429 17 8 3.9385 10.2351 -2.5438 18 6 4.2256 9.2563 -0.3292 19 7 3.6092 -0.6405 0.0015 20 6 4.7869 -1.5118 0.0078 21 6 5.1935 -1.8172 -1.4108 22 1 4.6306 -1.4040 -2.2347 23 6 6.2840 -2.6241 -1.6569 24 7 6.9697 -3.1269 -0.6536 25 14 6.7875 -3.0033 -3.4154 26 1 7.7531 -1.9777 -3.8857 27 1 7.4236 -4.3440 -3.4701 28 1 5.5863 -2.9893 -4.2882 29 7 2.2730 -1.0608 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.9903 2.1596 -0.0013 34 1 5.6358 1.1292 0.0020 35 1 6.4325 3.5448 0.8929 36 1 6.4347 3.5445 -0.8871 37 1 5.3721 5.3352 2.1363 38 1 4.6795 7.7020 2.1371 39 1 5.3879 5.3348 -2.1277 40 1 4.6501 7.8102 -3.1980 41 1 3.2303 9.4666 0.0623 42 1 4.9499 9.9706 0.0623 43 1 5.6074 -1.0099 0.5209 44 1 4.5488 -2.4409 0.5256 45 1 7.7372 -3.6944 -0.8267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253427330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:51 Heat of formation + Delta-G solvation = 38.599117 kcal Electronic energy + Delta-G solvation = -29830.647749 eV Core-core repulsion = 25621.757136 eV Total energy + Delta-G solvation = -4208.890613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72831 -40.89419 -39.52465 -38.52104 -36.19369 -34.74436 -33.79069 -33.21853 -32.10502 -30.80130 -29.92547 -29.16125 -28.27715 -26.35496 -26.03395 -23.08457 -22.98442 -22.11627 -21.67493 -20.66678 -19.74356 -19.28385 -18.05189 -17.07140 -16.93401 -16.74781 -16.42503 -16.30384 -15.94574 -15.58103 -14.94648 -14.89120 -14.47142 -14.36312 -14.14859 -13.93877 -13.93161 -13.37161 -13.12277 -12.90680 -12.81543 -12.72496 -12.53413 -12.40125 -12.17439 -11.95291 -11.80500 -11.60354 -11.27862 -11.11782 -11.06324 -10.92812 -10.54080 -10.41721 -10.37010 -9.97005 -9.84863 -9.53807 -9.03174 -8.76438 -8.30931 -7.94804 -7.46837 -6.37679 -4.46194 0.84742 1.01428 2.12815 2.22066 2.65706 2.80559 3.07626 3.11913 3.20297 3.26114 3.46347 3.57592 3.75876 3.81714 4.06569 4.20665 4.38254 4.50401 4.76404 4.79503 4.95764 4.98791 5.00167 5.09287 5.14127 5.26750 5.34297 5.48359 5.54627 5.63472 5.78628 6.00715 6.05832 6.13969 6.16202 6.19252 6.24637 6.32804 6.39955 6.43201 6.63893 6.70892 6.79809 7.00843 7.48535 7.54785 7.59499 7.61303 7.75639 7.88154 8.26756 8.58656 8.67716 9.21597 10.69386 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.002368 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.663906 B =11823.368118 C =12975.118662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.641 5.641 6 C 0.519 3.481 7 O -0.506 6.506 8 C -0.100 4.100 9 C -0.028 4.028 10 C -0.119 4.119 11 C -0.065 4.065 12 C -0.144 4.144 13 C 0.139 3.861 14 C -0.119 4.119 15 N -0.659 5.659 16 C 0.528 3.472 17 O -0.510 6.510 18 C -0.114 4.114 19 N -0.345 5.345 20 C 0.257 3.743 21 C -0.540 4.540 22 H 0.064 0.936 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 N -0.286 5.286 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.413 0.587 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 19.945 4.398 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.079 3.921 5 N -0.288 5.288 6 C 0.305 3.695 7 O -0.379 6.379 8 C -0.140 4.140 9 C -0.029 4.029 10 C -0.138 4.138 11 C -0.083 4.083 12 C -0.147 4.147 13 C 0.042 3.958 14 C -0.139 4.139 15 N -0.302 5.302 16 C 0.317 3.683 17 O -0.384 6.384 18 C -0.153 4.153 19 N -0.130 5.130 20 C 0.139 3.861 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.196 1.196 29 N -0.111 5.111 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.251 0.749 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.887 19.486 4.126 19.938 hybrid contribution 1.092 -0.098 -1.492 1.852 sum 0.205 19.388 2.634 19.567 Atomic orbital electron populations 1.20017 0.87636 1.02426 1.02030 1.22029 0.96505 0.91084 1.01855 1.21263 0.89087 1.00405 1.21965 1.17928 0.88046 0.83328 1.02808 1.42806 1.08286 1.05592 1.72101 1.20413 0.91307 0.81193 0.76541 1.90673 1.26665 1.73620 1.46979 1.20663 0.96267 0.90620 1.06464 1.18906 0.97832 0.93530 0.92611 1.20942 1.01034 0.94179 0.97664 1.20191 0.97843 0.94049 0.96264 1.19766 1.06331 0.95437 0.93137 1.18005 0.99203 0.91509 0.87044 1.20183 1.03680 0.91360 0.98725 1.43733 1.65653 1.11605 1.09194 1.20634 0.75045 0.81410 0.91256 1.90822 1.48257 1.35944 1.63427 1.21044 1.05368 0.95686 0.93191 1.49351 1.06525 1.02204 1.54925 1.19618 0.77826 0.89769 0.98909 1.21335 1.13219 1.31930 0.91363 0.91738 1.24936 0.95734 0.94871 0.98144 1.69917 1.19124 1.32758 1.30945 0.86358 0.78813 0.77911 0.83662 1.20327 1.20772 1.19629 1.77364 0.86152 1.21806 1.25772 0.91377 0.91178 0.91519 0.82180 0.74674 0.86920 0.87049 0.85138 0.85192 0.85492 0.74860 0.85908 0.85992 0.93799 0.92575 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.54 16 2 C 0.05 0.99 7.21 -82.45 -0.59 0.40 16 3 C -0.30 -5.89 9.58 -39.78 -0.38 -6.27 16 4 C 0.30 6.09 7.66 -153.17 -1.17 4.92 16 5 N -0.64 -10.21 5.41 -11.47 -0.06 -10.27 16 6 C 0.52 7.17 7.79 -10.99 -0.09 7.08 16 7 O -0.51 -8.49 13.16 5.54 0.07 -8.41 16 8 C -0.10 -0.89 5.82 -29.04 -0.17 -1.06 16 9 C -0.03 -0.26 4.36 -104.71 -0.46 -0.72 16 10 C -0.12 -1.02 9.71 -39.50 -0.38 -1.40 16 11 C -0.07 -0.50 10.03 -39.73 -0.40 -0.90 16 12 C -0.14 -1.22 6.35 -104.37 -0.66 -1.88 16 13 C 0.14 1.30 7.11 -83.69 -0.60 0.71 16 14 C -0.12 -1.13 9.71 -39.27 -0.38 -1.51 16 15 N -0.66 -5.86 5.88 -9.70 -0.06 -5.92 16 16 C 0.53 5.29 8.71 -10.83 -0.09 5.19 16 17 O -0.51 -6.81 18.03 5.55 0.10 -6.71 16 18 C -0.11 -0.81 6.88 -28.48 -0.20 -1.01 16 19 N -0.34 -7.86 3.60 -61.57 -0.22 -8.09 16 20 C 0.26 6.22 6.01 -5.19 -0.03 6.19 16 21 C -0.54 -14.13 9.39 -34.44 -0.32 -14.45 16 22 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -23.73 13.29 55.43 0.74 -22.99 16 25 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 29 N -0.29 -6.56 12.56 33.65 0.42 -6.13 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.16 3.12 5.83 -52.48 -0.31 2.81 16 34 H 0.42 6.00 7.96 -40.82 -0.32 5.67 16 35 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.11 0.79 8.08 -51.92 -0.42 0.37 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.41 3.01 8.96 -40.82 -0.37 2.64 16 41 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 1.02 7.49 -51.92 -0.39 0.63 16 44 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -34.28 390.58 -9.37 -43.65 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.58 Total: 7.43 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -5.65 Total: -3.61 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.82 Total: -53.40 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.17 Total: -15.13 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.28 -9.37 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253427330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.246 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds