Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39751 * 125.84283 * 2 1 4 4 C 1.36111 * 107.83102 * 179.97438 * 3 2 1 5 5 N 1.39471 * 126.21434 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00639 * 359.97080 * 5 4 3 7 7 O 1.21294 * 119.99590 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00611 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.47559 * 180.02562 * 8 6 5 10 10 C 1.38301 * 119.80865 * 90.00016 * 9 8 6 11 11 C 1.38396 * 119.82252 * 180.02562 * 10 9 8 12 12 C 1.37671 * 119.91650 * 0.02562 * 11 10 9 13 13 C 1.38902 * 120.81023 * 359.97438 * 12 11 10 14 14 C 1.37933 * 119.81321 * 269.73097 * 9 8 6 15 15 N 1.39523 * 110.23331 * 179.97438 * 13 12 11 16 16 C 1.34370 * 112.24590 * 0.02562 * 15 13 12 17 17 O 1.21291 * 126.44502 * 180.02562 * 16 15 13 18 18 C 1.51136 * 132.84975 * 179.97438 * 12 11 10 19 19 N 1.35252 * 107.56776 * 359.97438 * 4 3 2 20 20 C 1.46497 * 126.05073 * 180.26507 * 19 4 3 21 21 C 1.50702 * 109.47088 * 269.71889 * 20 19 4 22 22 H 1.07995 * 120.00047 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00180 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99822 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00228 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46428 * 90.00092 * 25 23 21 27 27 H 1.48500 * 109.47348 * 209.99926 * 25 23 21 28 28 H 1.48495 * 109.47311 * 330.00347 * 25 23 21 29 29 N 1.30848 * 125.83473 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47495 * 270.02244 * 1 2 3 31 31 H 1.09007 * 109.47041 * 30.02342 * 1 2 3 32 32 H 1.08996 * 109.47612 * 150.01846 * 1 2 3 33 33 H 1.08005 * 126.08594 * 359.91334 * 3 2 1 34 34 H 0.97002 * 119.99691 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47151 * 300.00572 * 8 6 5 36 36 H 1.09007 * 109.46994 * 60.00353 * 8 6 5 37 37 H 1.08000 * 120.08945 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.03902 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.93309 * 359.97438 * 14 9 8 40 40 H 0.97003 * 123.88127 * 180.02562 * 15 13 12 41 41 H 1.09001 * 110.51315 * 298.67454 * 18 12 11 42 42 H 1.08999 * 110.50993 * 61.38943 * 18 12 11 43 43 H 1.09008 * 109.46895 * 29.71218 * 20 19 4 44 44 H 1.08997 * 109.47576 * 149.71493 * 20 19 4 45 45 H 0.97005 * 119.99959 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 0.0006 5 7 4.7513 1.5273 0.0013 6 6 4.6158 2.8683 0.0008 7 8 3.5097 3.3660 0.0003 8 6 5.8384 3.7492 0.0022 9 6 5.4155 5.1956 0.0020 10 6 5.2214 5.8553 1.2019 11 6 4.8325 7.1835 1.2021 12 6 4.6399 7.8427 0.0089 13 6 4.8316 7.1913 -1.2028 14 6 5.2296 5.8556 -1.1949 15 7 4.5766 8.0608 -2.2638 16 6 4.2175 9.2853 -1.8429 17 8 3.9385 10.2351 -2.5438 18 6 4.2256 9.2563 -0.3292 19 7 3.6092 -0.6405 0.0015 20 6 4.7869 -1.5118 0.0078 21 6 5.1935 -1.8172 -1.4108 22 1 4.6306 -1.4040 -2.2347 23 6 6.2840 -2.6241 -1.6569 24 7 6.9697 -3.1269 -0.6536 25 14 6.7875 -3.0033 -3.4154 26 1 7.7531 -1.9777 -3.8857 27 1 7.4236 -4.3440 -3.4701 28 1 5.5863 -2.9893 -4.2882 29 7 2.2730 -1.0608 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.9903 2.1596 -0.0013 34 1 5.6358 1.1292 0.0020 35 1 6.4325 3.5448 0.8929 36 1 6.4347 3.5445 -0.8871 37 1 5.3721 5.3352 2.1363 38 1 4.6795 7.7020 2.1371 39 1 5.3879 5.3348 -2.1277 40 1 4.6501 7.8102 -3.1980 41 1 3.2303 9.4666 0.0623 42 1 4.9499 9.9706 0.0623 43 1 5.6074 -1.0099 0.5209 44 1 4.5488 -2.4409 0.5256 45 1 7.7372 -3.6944 -0.8267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253427330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = 16.728540 kcal Electronic energy + Delta-G solvation = -29831.596128 eV Core-core repulsion = 25621.757136 eV Total energy + Delta-G solvation = -4209.838992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.47892 -42.30836 -40.68111 -39.38929 -36.97680 -36.19910 -35.53826 -33.91971 -33.79138 -31.64497 -30.67980 -30.56650 -29.68026 -27.80647 -27.14901 -24.75599 -23.73742 -23.23030 -22.42112 -21.60226 -21.15913 -20.59384 -18.88546 -18.78193 -18.32246 -17.79197 -17.56885 -17.03345 -16.85600 -16.70452 -16.41050 -16.03506 -15.84463 -15.41895 -15.20353 -15.05758 -14.68300 -14.51353 -14.41181 -14.09796 -14.02286 -13.76817 -13.60257 -13.37716 -13.33788 -13.14772 -13.01753 -12.88991 -12.71778 -12.68932 -12.30143 -11.90719 -11.88192 -11.79559 -11.66342 -11.41561 -11.33072 -10.86341 -10.74790 -9.68498 -9.60901 -9.02449 -8.99381 -8.35713 -6.52774 0.17177 0.35479 0.85476 1.35477 1.36574 1.39496 1.46299 1.52217 1.69209 1.99828 2.10428 2.24580 2.37388 2.82297 2.94882 3.12248 3.44646 3.64419 3.82191 3.86040 3.91546 4.18325 4.28913 4.36681 4.50380 4.51401 4.55871 4.64743 4.65630 4.75015 4.86330 4.89173 4.89470 4.92652 4.98167 5.00838 5.14671 5.23418 5.26351 5.43890 5.52072 5.54323 5.67788 5.75428 5.78407 5.98225 6.06058 6.21107 6.34823 6.59189 6.89419 7.02187 7.09433 7.19555 8.70549 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.002368 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.663906 B =11823.368118 C =12975.118662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.056 3.944 3 C -0.309 4.309 4 C 0.303 3.697 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.535 6.535 8 C -0.089 4.089 9 C -0.043 4.043 10 C -0.124 4.124 11 C -0.065 4.065 12 C -0.145 4.145 13 C 0.119 3.881 14 C -0.129 4.129 15 N -0.656 5.656 16 C 0.522 3.478 17 O -0.552 6.552 18 C -0.106 4.106 19 N -0.368 5.368 20 C 0.272 3.728 21 C -0.554 4.554 22 H 0.046 0.954 23 C 0.029 3.971 24 N -0.913 5.913 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.276 1.276 28 H -0.281 1.281 29 N -0.335 5.335 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.423 0.577 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.417 0.583 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.052 0.948 44 H 0.025 0.975 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 21.264 4.915 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.341 4.341 4 C 0.080 3.920 5 N -0.289 5.289 6 C 0.310 3.690 7 O -0.410 6.410 8 C -0.128 4.128 9 C -0.044 4.044 10 C -0.143 4.143 11 C -0.083 4.083 12 C -0.147 4.147 13 C 0.023 3.977 14 C -0.150 4.150 15 N -0.298 5.298 16 C 0.312 3.688 17 O -0.430 6.430 18 C -0.144 4.144 19 N -0.153 5.153 20 C 0.153 3.847 21 C -0.592 4.592 22 H 0.064 0.936 23 C -0.173 4.173 24 N -0.551 5.551 25 Si 0.791 3.209 26 H -0.185 1.185 27 H -0.201 1.201 28 H -0.206 1.206 29 N -0.160 5.160 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.261 0.739 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.255 0.745 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.225 20.804 4.660 21.320 hybrid contribution 0.843 -0.460 -1.604 1.869 sum 0.618 20.344 3.056 20.581 Atomic orbital electron populations 1.20208 0.84184 1.03723 1.03810 1.22865 0.98650 0.90253 0.99140 1.21451 0.89163 1.00642 1.22808 1.18339 0.89753 0.82745 1.01170 1.43068 1.07410 1.06076 1.72315 1.21390 0.92566 0.80414 0.74676 1.90646 1.28430 1.73806 1.48070 1.20737 0.94042 0.89096 1.08955 1.19030 0.98743 0.93717 0.92955 1.21255 1.00313 0.94680 0.98005 1.20512 0.96851 0.93891 0.97088 1.20023 1.05701 0.95924 0.93097 1.18172 1.00226 0.91765 0.87537 1.20340 1.03860 0.91620 0.99185 1.43764 1.64992 1.11461 1.09610 1.21111 0.74243 0.80978 0.92507 1.90795 1.50394 1.37234 1.64625 1.21097 1.06928 0.95558 0.90855 1.49161 1.06213 1.03015 1.56924 1.19227 0.78686 0.89020 0.97720 1.21385 1.13538 1.32645 0.91658 0.93618 1.25643 0.95462 0.94342 1.01822 1.69986 1.19448 1.32963 1.32672 0.85426 0.78260 0.78295 0.78937 1.18533 1.20115 1.20619 1.77309 0.86586 1.23657 1.28415 0.89234 0.89003 0.91047 0.81573 0.73915 0.83813 0.85018 0.83536 0.82457 0.85192 0.74471 0.84244 0.83622 0.92984 0.95703 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.23 0.74 -0.96 16 2 C 0.06 2.22 7.21 43.07 0.31 2.53 16 3 C -0.31 -12.27 9.58 22.14 0.21 -12.06 16 4 C 0.30 12.31 7.66 131.32 1.01 13.32 16 5 N -0.64 -20.01 5.41 -308.57 -1.67 -21.68 16 6 C 0.52 13.64 7.79 87.65 0.68 14.33 16 7 O -0.53 -17.38 13.16 -3.07 -0.04 -17.42 16 8 C -0.09 -1.36 5.82 29.10 0.17 -1.19 16 9 C -0.04 -0.72 4.36 -19.92 -0.09 -0.81 16 10 C -0.12 -1.77 9.71 22.32 0.22 -1.55 16 11 C -0.07 -0.82 10.03 22.17 0.22 -0.59 16 12 C -0.14 -2.12 6.35 -19.70 -0.13 -2.25 16 13 C 0.12 2.09 7.11 38.35 0.27 2.37 16 14 C -0.13 -2.29 9.71 22.47 0.22 -2.07 16 15 N -0.66 -11.37 5.88 -303.20 -1.78 -13.15 16 16 C 0.52 10.12 8.71 87.94 0.77 10.89 16 17 O -0.55 -14.87 18.03 -3.06 -0.06 -14.93 16 18 C -0.11 -1.28 6.88 29.46 0.20 -1.08 16 19 N -0.37 -17.20 3.60 -348.72 -1.26 -18.46 16 20 C 0.27 13.61 6.01 85.63 0.51 14.13 16 21 C -0.55 -29.54 9.39 25.60 0.24 -29.30 16 22 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 23 C 0.03 1.51 5.46 84.65 0.46 1.97 16 24 N -0.91 -48.68 13.29 21.45 0.28 -48.40 16 25 Si 0.97 41.09 29.54 68.60 2.03 43.12 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 29 N -0.33 -15.71 12.56 -47.46 -0.60 -16.31 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.17 6.38 5.83 -2.91 -0.02 6.36 16 34 H 0.42 11.88 7.96 -92.71 -0.74 11.15 16 35 H 0.14 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.13 1.52 8.08 -2.38 -0.02 1.50 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.42 6.13 8.96 -92.71 -0.83 5.30 16 41 H 0.14 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 2.46 7.49 -2.38 -0.02 2.44 16 44 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 Total: -1.00 -75.91 390.58 2.44 -73.48 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.50 Total: 26.09 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.03 Total: 7.67 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -5.02 Total: -118.00 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.10 Total: -32.35 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -75.91 2.44 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253427330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.207 kcal (2) G-P(sol) polarization free energy of solvation -75.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds