Wall clock time and date at job start Tue Mar 31 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86801 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47149 * 239.99707 * 3 2 1 5 5 H 1.48505 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47255 * 119.99575 * 3 2 1 7 7 C 1.39021 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 143.33944 * 7 2 1 9 9 N 1.36901 * 119.99965 * 323.35047 * 7 2 1 10 10 C 1.34776 * 119.99940 * 292.17418 * 9 7 2 11 11 O 1.21614 * 119.99941 * 356.49066 * 10 9 7 12 12 C 1.47510 * 119.99788 * 176.47754 * 10 9 7 13 13 C 1.39629 * 120.50338 * 246.16241 * 12 10 9 14 14 N 1.31635 * 120.63335 * 179.97438 * 13 12 10 15 15 C 1.32422 * 121.82042 * 0.02562 * 14 13 12 16 16 O 1.35514 * 119.52383 * 179.97438 * 15 14 13 17 17 C 1.39222 * 120.94922 * 359.97438 * 15 14 13 18 18 Br 1.89101 * 120.36701 * 180.02562 * 17 15 14 19 19 C 1.38045 * 119.25464 * 359.74740 * 17 15 14 20 20 C 1.46506 * 120.00157 * 112.18559 * 9 7 2 21 21 C 1.54264 * 110.03156 * 309.42735 * 20 9 7 22 22 C 1.54963 * 104.16229 * 95.75133 * 21 20 9 23 23 C 1.54892 * 102.77493 * 37.89087 * 22 21 20 24 24 C 1.53873 * 110.03381 * 66.64554 * 20 9 7 25 25 H 0.97002 * 119.99764 * 5.01771 * 1 2 3 26 26 H 1.07999 * 119.67886 * 0.02562 * 13 12 10 27 27 H 0.96701 * 114.00331 * 90.00248 * 16 15 14 28 28 H 1.08009 * 120.82892 * 180.30008 * 19 17 15 29 29 H 1.09002 * 110.01420 * 188.03584 * 20 9 7 30 30 H 1.09000 * 110.48880 * 214.40528 * 21 20 9 31 31 H 1.09004 * 110.48399 * 337.04585 * 21 20 9 32 32 H 1.08993 * 110.72434 * 279.58239 * 22 21 20 33 33 H 1.08997 * 110.92416 * 156.29034 * 22 21 20 34 34 H 1.09001 * 110.48844 * 203.40443 * 23 22 21 35 35 H 1.09004 * 110.60132 * 80.81443 * 23 22 21 36 36 H 1.08998 * 110.03346 * 359.94936 * 24 20 9 37 37 H 1.09001 * 110.03415 * 121.38537 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1015 1.6965 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 2.9287 -1.2967 -0.5579 9 7 1.5274 -2.2720 0.7087 10 6 1.5053 -2.2327 2.0557 11 8 1.9716 -1.2757 2.6438 12 6 0.9154 -3.3503 2.8166 13 6 -0.2462 -3.1610 3.5679 14 7 -0.7751 -4.1566 4.2475 15 6 -0.2352 -5.3658 4.2487 16 8 -0.8185 -6.3569 4.9655 17 6 0.9232 -5.6334 3.5242 18 35 1.6798 -7.3664 3.5370 19 6 1.5098 -4.6209 2.7917 20 6 1.0363 -3.4579 0.0024 21 6 0.0274 -3.0432 -1.0884 22 6 0.8785 -2.9612 -2.3807 23 6 1.8573 -4.1511 -2.2223 24 6 2.1996 -4.1618 -0.7180 25 1 -0.4850 0.8369 -0.0735 26 1 -0.7157 -2.1887 3.5910 27 1 -1.4775 -6.8640 4.4717 28 1 2.4060 -4.8015 2.2166 29 1 0.5642 -4.1428 0.7068 30 1 -0.7529 -3.7971 -1.1928 31 1 -0.4084 -2.0716 -0.8554 32 1 1.4220 -2.0175 -2.4254 33 1 0.2555 -3.0889 -3.2659 34 1 2.7561 -3.9876 -2.8169 35 1 1.3752 -5.0853 -2.5104 36 1 3.1294 -3.6206 -0.5429 37 1 2.2920 -5.1883 -0.3634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266162737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:00 Heat of formation + Delta-G solvation = -26.834333 kcal Electronic energy + Delta-G solvation = -24087.088105 eV Core-core repulsion = 20490.373704 eV Total energy + Delta-G solvation = -3596.714401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 354.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60816 -38.92104 -37.20002 -36.53653 -33.51152 -33.28367 -32.00799 -30.94910 -29.23092 -27.88742 -27.08492 -25.29536 -23.63963 -23.22439 -20.34865 -19.91439 -19.39900 -18.95781 -17.26255 -16.93571 -16.12598 -16.04598 -15.04028 -14.80248 -14.42138 -14.38853 -13.95298 -13.61722 -13.47558 -13.10826 -13.00553 -12.50056 -12.20561 -11.90074 -11.68429 -11.39634 -11.21905 -11.05424 -10.67708 -10.59899 -10.49062 -10.43390 -10.38109 -10.19160 -10.02529 -9.76464 -9.61802 -9.46877 -8.79753 -8.63252 -8.51649 -7.25823 -6.40652 -4.18765 0.73912 1.04920 1.43399 3.21644 3.30133 3.32080 3.45944 3.56666 3.80759 4.16791 4.49562 4.69363 4.89466 4.91355 4.99830 5.29149 5.31890 5.43664 5.47267 5.60461 5.79125 5.99485 6.08778 6.20326 6.26438 6.32291 6.35747 6.42435 6.54035 6.59148 6.75886 6.93578 7.18601 7.29158 7.43614 7.61058 7.77758 8.26767 8.79845 8.88335 9.29841 9.95104 10.57640 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004253 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.386918 B = 6581.688173 C = 7493.665788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.095 3.905 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.357 4.357 8 H 0.078 0.922 9 N -0.421 5.421 10 C 0.527 3.473 11 O -0.546 6.546 12 C -0.144 4.144 13 C 0.172 3.828 14 N -0.491 5.491 15 C 0.335 3.665 16 O -0.471 6.471 17 C -0.164 4.164 18 Br -0.030 7.030 19 C -0.012 4.012 20 C 0.121 3.879 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.130 4.130 25 H 0.271 0.729 26 H 0.174 0.826 27 H 0.401 0.599 28 H 0.151 0.849 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -14.396 1.240 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.118 4.118 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.095 0.905 9 N -0.142 5.142 10 C 0.312 3.688 11 O -0.426 6.426 12 C -0.150 4.150 13 C 0.014 3.986 14 N -0.209 5.209 15 C 0.154 3.846 16 O -0.278 6.278 17 C -0.247 4.247 18 Br 0.055 6.945 19 C -0.039 4.039 20 C 0.018 3.982 21 C -0.167 4.167 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.191 0.809 27 H 0.259 0.741 28 H 0.168 0.832 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.056 -14.165 2.525 14.427 hybrid contribution 0.515 0.710 -0.811 1.194 sum -0.541 -13.455 1.714 13.575 Atomic orbital electron populations 1.69903 1.07308 1.28440 1.40500 1.25445 0.94239 1.00126 0.91983 0.86548 0.80454 0.81447 0.79296 1.20090 1.21420 1.19094 1.18439 1.07792 0.88231 1.33845 0.90484 1.43233 1.54783 1.14276 1.01892 1.18098 0.81758 0.85341 0.83629 1.90694 1.48627 1.34441 1.68810 1.21671 0.97301 0.95399 1.00644 1.22855 0.90611 0.96968 0.88136 1.67360 1.33586 0.99791 1.20154 1.18919 0.89370 0.87344 0.89003 1.84742 1.58928 1.44187 1.39927 1.22911 1.01554 0.94446 1.05799 1.96692 1.82904 1.16607 1.98326 1.21665 0.98460 0.89890 0.93910 1.21927 0.93601 0.88434 0.94281 1.22681 0.96254 1.03671 0.94110 1.22397 0.97132 0.98735 0.96577 1.22274 0.99051 0.98333 0.95943 1.22497 1.00023 0.98787 0.95517 0.91930 0.80936 0.74059 0.83160 0.92635 0.94158 0.86557 0.90028 0.93689 0.92728 0.93011 0.90985 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.17 11.94 55.50 0.66 -20.50 16 2 C 0.09 2.40 4.91 -17.45 -0.09 2.31 16 3 Si 0.90 20.66 29.68 -169.99 -5.05 15.61 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.36 -8.84 5.78 -15.00 -0.09 -8.93 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 9 N -0.42 -9.51 2.27 -107.72 -0.24 -9.75 16 10 C 0.53 12.17 6.96 -12.48 -0.09 12.08 16 11 O -0.55 -14.78 16.79 5.27 0.09 -14.70 16 12 C -0.14 -2.70 4.38 -104.82 -0.46 -3.16 16 13 C 0.17 3.07 10.95 -17.12 -0.19 2.88 16 14 N -0.49 -8.20 10.37 -12.92 -0.13 -8.33 16 15 C 0.34 4.99 7.73 -16.93 -0.13 4.86 16 16 O -0.47 -5.79 12.89 -18.24 -0.23 -6.03 16 17 C -0.16 -2.37 6.25 -39.29 -0.25 -2.62 16 18 Br -0.03 -0.35 33.18 -68.01 -2.26 -2.61 16 19 C -0.01 -0.19 7.97 -38.88 -0.31 -0.50 16 20 C 0.12 2.30 2.93 -66.81 -0.20 2.10 16 21 C -0.13 -2.47 6.03 -25.03 -0.15 -2.62 16 22 C -0.11 -1.94 6.57 -24.70 -0.16 -2.10 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.99 16 24 C -0.13 -2.15 6.34 -25.61 -0.16 -2.31 16 25 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 26 H 0.17 3.03 8.06 -52.49 -0.42 2.61 16 27 H 0.40 2.99 9.06 45.56 0.41 3.40 16 28 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 29 H 0.06 1.00 5.34 -51.93 -0.28 0.72 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.12 2.63 5.82 -51.93 -0.30 2.33 16 32 H 0.08 1.62 7.18 -51.93 -0.37 1.25 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.30 7.48 -51.93 -0.39 0.92 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -28.88 329.96 -8.06 -36.94 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.44 Total: 4.39 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.43 Total: 0.01 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.28 Total: -38.59 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.15 Total: -20.72 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.05 Total: 15.61 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.26 Total: -2.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.88 -8.06 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266162737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.105 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds