Wall clock time and date at job start Tue Mar 31 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86801 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47149 * 239.99707 * 3 2 1 5 5 H 1.48505 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47255 * 119.99575 * 3 2 1 7 7 C 1.39021 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99665 * 143.33944 * 7 2 1 9 9 N 1.36901 * 119.99965 * 323.35047 * 7 2 1 10 10 C 1.34776 * 119.99940 * 292.17418 * 9 7 2 11 11 O 1.21614 * 119.99941 * 356.49066 * 10 9 7 12 12 C 1.47510 * 119.99788 * 176.47754 * 10 9 7 13 13 C 1.39629 * 120.50338 * 246.16241 * 12 10 9 14 14 N 1.31635 * 120.63335 * 179.97438 * 13 12 10 15 15 C 1.32422 * 121.82042 * 0.02562 * 14 13 12 16 16 O 1.35514 * 119.52383 * 179.97438 * 15 14 13 17 17 C 1.39222 * 120.94922 * 359.97438 * 15 14 13 18 18 Br 1.89101 * 120.36701 * 180.02562 * 17 15 14 19 19 C 1.38045 * 119.25464 * 359.74740 * 17 15 14 20 20 C 1.46506 * 120.00157 * 112.18559 * 9 7 2 21 21 C 1.54264 * 110.03156 * 309.42735 * 20 9 7 22 22 C 1.54963 * 104.16229 * 95.75133 * 21 20 9 23 23 C 1.54892 * 102.77493 * 37.89087 * 22 21 20 24 24 C 1.53873 * 110.03381 * 66.64554 * 20 9 7 25 25 H 0.97002 * 119.99764 * 5.01771 * 1 2 3 26 26 H 1.07999 * 119.67886 * 0.02562 * 13 12 10 27 27 H 0.96701 * 114.00331 * 90.00248 * 16 15 14 28 28 H 1.08009 * 120.82892 * 180.30008 * 19 17 15 29 29 H 1.09002 * 110.01420 * 188.03584 * 20 9 7 30 30 H 1.09000 * 110.48880 * 214.40528 * 21 20 9 31 31 H 1.09004 * 110.48399 * 337.04585 * 21 20 9 32 32 H 1.08993 * 110.72434 * 279.58239 * 22 21 20 33 33 H 1.08997 * 110.92416 * 156.29034 * 22 21 20 34 34 H 1.09001 * 110.48844 * 203.40443 * 23 22 21 35 35 H 1.09004 * 110.60132 * 80.81443 * 23 22 21 36 36 H 1.08998 * 110.03346 * 359.94936 * 24 20 9 37 37 H 1.09001 * 110.03415 * 121.38537 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1015 1.6965 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 2.9287 -1.2967 -0.5579 9 7 1.5274 -2.2720 0.7087 10 6 1.5053 -2.2327 2.0557 11 8 1.9716 -1.2757 2.6438 12 6 0.9154 -3.3503 2.8166 13 6 -0.2462 -3.1610 3.5679 14 7 -0.7751 -4.1566 4.2475 15 6 -0.2352 -5.3658 4.2487 16 8 -0.8185 -6.3569 4.9655 17 6 0.9232 -5.6334 3.5242 18 35 1.6798 -7.3664 3.5370 19 6 1.5098 -4.6209 2.7917 20 6 1.0363 -3.4579 0.0024 21 6 0.0274 -3.0432 -1.0884 22 6 0.8785 -2.9612 -2.3807 23 6 1.8573 -4.1511 -2.2223 24 6 2.1996 -4.1618 -0.7180 25 1 -0.4850 0.8369 -0.0735 26 1 -0.7157 -2.1887 3.5910 27 1 -1.4775 -6.8640 4.4717 28 1 2.4060 -4.8015 2.2166 29 1 0.5642 -4.1428 0.7068 30 1 -0.7529 -3.7971 -1.1928 31 1 -0.4084 -2.0716 -0.8554 32 1 1.4220 -2.0175 -2.4254 33 1 0.2555 -3.0889 -3.2659 34 1 2.7561 -3.9876 -2.8169 35 1 1.3752 -5.0853 -2.5104 36 1 3.1294 -3.6206 -0.5429 37 1 2.2920 -5.1883 -0.3634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266162737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:00 Heat of formation + Delta-G solvation = -46.665734 kcal Electronic energy + Delta-G solvation = -24087.948059 eV Core-core repulsion = 20490.373704 eV Total energy + Delta-G solvation = -3597.574355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 354.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94539 -40.46756 -38.54025 -37.96305 -35.27901 -34.55632 -33.68840 -32.34542 -30.43738 -29.28064 -28.62712 -26.98036 -24.95136 -24.67711 -21.95204 -21.25020 -21.01786 -20.07184 -18.88375 -18.30127 -17.70016 -17.31605 -16.84198 -16.39349 -15.87959 -15.69785 -15.48211 -15.20645 -14.87022 -14.52203 -14.37027 -13.96923 -13.76747 -13.45414 -13.14543 -12.96001 -12.73936 -12.52081 -12.32741 -12.26444 -12.02594 -11.77620 -11.63121 -11.48018 -11.46489 -11.15342 -10.99110 -10.75584 -10.54358 -10.37615 -9.92807 -9.08869 -8.31224 -6.12419 -0.52803 -0.23051 0.30230 1.33634 1.43822 1.54828 1.90659 2.10989 2.34444 2.46539 2.83900 3.04317 3.39761 3.58918 3.62718 3.93454 4.02213 4.08677 4.11349 4.31870 4.41198 4.62788 4.78016 4.80518 4.91170 4.97387 5.03347 5.06983 5.22572 5.26206 5.36188 5.53927 5.56159 5.77471 5.93329 6.33616 6.38389 6.58716 6.96880 7.03945 7.46779 8.11635 8.64717 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004253 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.386918 B = 6581.688173 C = 7493.665788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.061 3.939 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.361 4.361 8 H 0.068 0.932 9 N -0.426 5.426 10 C 0.519 3.481 11 O -0.601 6.601 12 C -0.164 4.164 13 C 0.169 3.831 14 N -0.501 5.501 15 C 0.349 3.651 16 O -0.468 6.468 17 C -0.162 4.162 18 Br 0.005 6.995 19 C -0.001 4.001 20 C 0.119 3.881 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.126 4.126 25 H 0.270 0.730 26 H 0.164 0.836 27 H 0.425 0.575 28 H 0.161 0.839 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -17.621 0.827 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.149 4.149 3 Si 0.761 3.239 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.487 4.487 8 H 0.085 0.915 9 N -0.146 5.146 10 C 0.306 3.694 11 O -0.485 6.485 12 C -0.171 4.171 13 C 0.012 3.988 14 N -0.220 5.220 15 C 0.167 3.833 16 O -0.279 6.279 17 C -0.245 4.245 18 Br 0.089 6.911 19 C -0.029 4.029 20 C 0.016 3.984 21 C -0.170 4.170 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.164 4.164 25 H 0.080 0.920 26 H 0.181 0.819 27 H 0.288 0.712 28 H 0.179 0.821 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.196 -17.430 2.062 17.592 hybrid contribution 0.528 1.520 -0.612 1.721 sum -0.668 -15.910 1.450 15.990 Atomic orbital electron populations 1.69963 1.07773 1.28569 1.41662 1.25899 0.94786 1.01851 0.92397 0.85936 0.79637 0.79802 0.78556 1.18340 1.20756 1.21874 1.18414 1.07471 0.89375 1.33465 0.91460 1.43400 1.54233 1.14853 1.02065 1.18633 0.81045 0.85802 0.83881 1.90639 1.51004 1.36954 1.69921 1.21191 0.98581 0.95314 1.01987 1.22666 0.90549 0.97177 0.88429 1.67392 1.33883 1.00331 1.20388 1.19070 0.89222 0.87239 0.87742 1.84701 1.59687 1.43531 1.40014 1.22972 1.01130 0.95636 1.04743 1.96736 1.82434 1.13672 1.98211 1.21695 0.98321 0.88972 0.93871 1.22093 0.94712 0.87199 0.94362 1.22638 0.96982 1.02348 0.95029 1.22316 0.97445 0.98375 0.96547 1.22246 0.99002 0.98392 0.94995 1.22467 0.97789 0.99782 0.96370 0.92021 0.81924 0.71172 0.82124 0.91374 0.91916 0.90292 0.93288 0.91844 0.91801 0.90152 0.93029 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.76 11.94 21.68 0.26 -44.51 16 2 C 0.06 3.19 4.91 84.95 0.42 3.61 16 3 Si 0.93 43.65 29.68 68.60 2.04 45.69 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 7 C -0.36 -18.44 5.78 84.09 0.49 -17.95 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.43 -19.65 2.27 -612.97 -1.39 -21.04 16 10 C 0.52 24.75 6.96 86.69 0.60 25.35 16 11 O -0.60 -34.15 16.79 -4.07 -0.07 -34.22 16 12 C -0.16 -6.20 4.38 -19.99 -0.09 -6.29 16 13 C 0.17 6.10 10.95 85.06 0.93 7.03 16 14 N -0.50 -16.16 10.37 -307.67 -3.19 -19.35 16 15 C 0.35 9.52 7.73 84.84 0.66 10.18 16 16 O -0.47 -9.91 12.89 -88.16 -1.14 -11.04 16 17 C -0.16 -4.24 6.25 22.46 0.14 -4.10 16 18 Br 0.01 0.10 33.18 -20.37 -0.68 -0.57 16 19 C 0.00 -0.03 7.97 22.73 0.18 0.15 16 20 C 0.12 4.42 2.93 45.71 0.13 4.55 16 21 C -0.13 -4.95 6.03 31.69 0.19 -4.76 16 22 C -0.11 -3.69 6.57 31.91 0.21 -3.48 16 23 C -0.11 -3.02 6.83 31.67 0.22 -2.80 16 24 C -0.13 -3.89 6.34 31.32 0.20 -3.69 16 25 H 0.27 13.70 8.32 -92.71 -0.77 12.93 16 26 H 0.16 6.02 8.06 -2.91 -0.02 6.00 16 27 H 0.43 4.63 9.06 -74.06 -0.67 3.96 16 28 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.07 2.34 5.34 -2.39 -0.01 2.32 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 3.64 5.82 -2.38 -0.01 3.63 16 32 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.81 7.48 -2.39 -0.02 1.80 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -64.70 329.96 0.56 -64.14 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.45 Total: 13.10 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.28 Total: 7.80 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.32 Total: -84.90 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.20 Total: -45.26 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.04 Total: 45.69 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.68 Total: -0.57 kcal Total: -64.70 0.56 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266162737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.474 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds