Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48503 * 109.47027 * 94.25436 * 3 2 1 5 5 H 1.48496 * 109.47180 * 214.25658 * 3 2 1 6 6 H 1.48501 * 109.47014 * 334.25415 * 3 2 1 7 7 C 1.40048 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00340 * 356.55950 * 7 2 1 9 9 C 1.46374 * 120.00028 * 176.55334 * 7 2 1 10 10 O 1.21691 * 119.99738 * 30.24923 * 9 7 2 11 11 N 1.34778 * 120.00275 * 210.24830 * 9 7 2 12 12 C 1.46962 * 120.59235 * 354.73099 * 11 9 7 13 13 C 1.53807 * 108.39794 * 124.76027 * 12 11 9 14 14 N 1.46961 * 108.58214 * 49.63997 * 13 12 11 15 15 C 1.34769 * 120.60019 * 124.62084 * 14 13 12 16 16 O 1.21577 * 120.00645 * 185.02615 * 15 14 13 17 17 C 1.47689 * 120.00024 * 5.03274 * 15 14 13 18 18 C 1.39692 * 120.08002 * 222.90480 * 17 15 14 19 19 C 1.37752 * 119.91533 * 179.74221 * 18 17 15 20 20 C 1.39020 * 120.08196 * 0.52859 * 19 18 17 21 21 N 1.39938 * 119.92354 * 179.72054 * 20 19 18 22 22 C 1.36311 * 126.85862 * 359.73765 * 21 20 19 23 23 C 1.34968 * 106.77469 * 179.84379 * 22 21 20 24 24 N 1.33378 * 109.01645 * 0.42619 * 23 22 21 25 25 N 1.28766 * 109.92409 * 359.73095 * 24 23 22 26 26 C 1.39030 * 120.16154 * 359.74167 * 20 19 18 27 27 C 1.37742 * 120.07952 * 359.97438 * 26 20 19 28 28 C 1.46966 * 118.80651 * 304.64797 * 14 13 12 29 29 C 1.46966 * 120.59573 * 175.01650 * 11 9 7 30 30 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.61195 * 244.54480 * 12 11 9 32 32 H 1.09003 * 109.61167 * 5.05162 * 12 11 9 33 33 H 1.08997 * 109.74393 * 289.84457 * 13 12 11 34 34 H 1.09005 * 109.67761 * 169.38973 * 13 12 11 35 35 H 1.07999 * 120.04292 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.95394 * 180.27580 * 19 18 17 37 37 H 1.08005 * 126.61542 * 359.97438 * 22 21 20 38 38 H 1.07997 * 125.49451 * 180.17246 * 23 22 21 39 39 H 1.07994 * 119.96298 * 179.97438 * 26 20 19 40 40 H 1.07998 * 120.04456 * 180.02562 * 27 26 20 41 41 H 1.08998 * 109.60978 * 295.47582 * 28 14 13 42 42 H 1.09003 * 109.61048 * 174.96699 * 28 14 13 43 43 H 1.09000 * 109.60850 * 354.94339 * 29 11 9 44 44 H 1.08999 * 109.60928 * 115.28372 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5782 1.9944 1.3962 5 1 3.4904 1.4678 -0.7881 6 1 1.3961 2.6770 -0.6082 7 6 2.0069 -1.2129 -0.0005 8 1 1.4684 -2.1474 0.0552 9 6 3.4687 -1.2140 -0.0768 10 8 4.1032 -0.2888 0.3946 11 7 4.1118 -2.2398 -0.6689 12 6 3.3685 -3.4170 -1.1394 13 6 3.6823 -3.6251 -2.6307 14 7 5.1402 -3.5892 -2.8119 15 6 5.7835 -4.6154 -3.4031 16 8 6.9977 -4.6166 -3.4658 17 6 5.0135 -5.7384 -3.9750 18 6 5.4399 -7.0535 -3.7746 19 6 4.7162 -8.0987 -4.3051 20 6 3.5690 -7.8455 -5.0484 21 7 2.8396 -8.9095 -5.5908 22 6 3.1274 -10.2374 -5.4822 23 6 2.1613 -10.9013 -6.1513 24 7 1.3053 -10.0185 -6.6679 25 7 1.6692 -8.8224 -6.3599 26 6 3.1448 -6.5376 -5.2547 27 6 3.8601 -5.4878 -4.7224 28 6 5.8843 -2.4145 -2.3363 29 6 5.5698 -2.2039 -0.8500 30 1 -0.4850 0.8400 0.0004 31 1 3.6766 -4.2951 -0.5720 32 1 2.2992 -3.2507 -1.0087 33 1 3.2209 -2.8315 -3.2183 34 1 3.2970 -4.5917 -2.9554 35 1 6.3336 -7.2507 -3.2013 36 1 5.0427 -9.1159 -4.1468 37 1 3.9655 -10.6743 -4.9596 38 1 2.0946 -11.9742 -6.2555 39 1 2.2534 -6.3446 -5.8330 40 1 3.5299 -4.4721 -4.8826 41 1 5.5798 -1.5346 -2.9029 42 1 6.9537 -2.5826 -2.4636 43 1 5.9547 -1.2362 -0.5282 44 1 6.0314 -2.9957 -0.2600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288122039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = 79.443354 kcal Electronic energy + Delta-G solvation = -30618.206200 eV Core-core repulsion = 26345.660816 eV Total energy + Delta-G solvation = -4272.545385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62983 -40.78924 -39.20542 -38.24897 -36.32825 -34.95481 -33.38242 -32.92840 -31.97471 -31.62634 -30.88548 -30.06009 -27.77924 -26.48676 -25.10039 -24.12707 -23.34291 -22.82850 -21.72353 -21.60455 -20.32141 -19.12579 -18.85064 -17.71407 -16.60195 -16.53942 -16.29152 -15.87540 -15.79854 -15.64611 -15.20901 -14.96183 -14.80664 -14.68958 -14.56722 -14.15144 -14.09355 -13.99373 -13.54655 -13.13948 -13.02420 -12.65696 -12.42434 -12.32271 -12.27699 -11.88784 -11.69062 -11.55109 -11.50891 -11.20006 -11.18517 -11.12042 -10.89219 -10.44258 -10.04822 -9.87056 -9.70820 -9.58352 -9.08071 -8.95665 -8.83740 -8.11362 -7.62523 -6.68254 -4.89116 -0.12605 0.75254 1.21821 1.64100 2.10292 2.49679 2.80336 3.25267 3.36114 3.39710 3.63130 3.86769 3.97662 4.02488 4.07606 4.19715 4.25937 4.40359 4.44500 4.55292 4.67011 4.75618 4.90557 5.03661 5.06183 5.12608 5.22301 5.29283 5.41395 5.44917 5.48109 5.58400 5.63108 5.70849 5.78102 5.84272 5.87121 5.96648 6.09255 6.14792 6.26666 6.36903 6.47991 6.92193 7.27886 7.46208 7.67141 7.76536 7.97629 8.20908 8.60186 8.99149 9.85100 10.33582 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.002435 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.199908 B =11494.031415 C =12953.334798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.103 3.897 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.257 1.257 6 H -0.315 1.315 7 C -0.538 4.538 8 H 0.092 0.908 9 C 0.561 3.439 10 O -0.607 6.607 11 N -0.632 5.632 12 C 0.108 3.892 13 C 0.080 3.920 14 N -0.597 5.597 15 C 0.558 3.442 16 O -0.540 6.540 17 C -0.119 4.119 18 C -0.043 4.043 19 C -0.132 4.132 20 C 0.155 3.845 21 N -0.319 5.319 22 C 0.023 3.977 23 C -0.072 4.072 24 N -0.231 5.231 25 N -0.058 5.058 26 C -0.111 4.111 27 C -0.064 4.064 28 C 0.099 3.901 29 C 0.104 3.896 30 H 0.282 0.718 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.197 0.803 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -19.767 -11.176 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.114 4.114 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.182 1.182 6 H -0.246 1.246 7 C -0.574 4.574 8 H 0.109 0.891 9 C 0.368 3.632 10 O -0.497 6.497 11 N -0.367 5.367 12 C -0.017 4.017 13 C -0.043 4.043 14 N -0.329 5.329 15 C 0.346 3.654 16 O -0.418 6.418 17 C -0.122 4.122 18 C -0.063 4.063 19 C -0.153 4.153 20 C 0.062 3.938 21 N -0.100 5.100 22 C -0.127 4.127 23 C -0.227 4.227 24 N -0.100 5.100 25 N -0.036 5.036 26 C -0.131 4.131 27 C -0.083 4.083 28 C -0.024 4.024 29 C -0.020 4.020 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.214 0.786 38 H 0.208 0.792 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.094 -18.314 -11.599 22.810 hybrid contribution 0.955 -0.173 0.541 1.111 sum 8.049 -18.488 -11.058 22.997 Atomic orbital electron populations 1.69513 1.07689 1.29874 1.39286 1.25624 0.94750 1.01448 0.89575 0.85610 0.78444 0.78109 0.79958 1.20195 1.18203 1.24578 1.20640 0.88062 0.95515 1.53182 0.89057 1.18481 0.89119 0.79187 0.76365 1.90339 1.69016 1.37191 1.53111 1.47861 1.05237 1.20212 1.63416 1.21950 1.00038 0.88346 0.91356 1.22723 0.79234 1.03127 0.99221 1.48032 1.08699 1.18497 1.57659 1.18203 0.87126 0.81845 0.78259 1.90789 1.13263 1.78727 1.59006 1.20096 0.96566 0.94293 1.01288 1.21010 0.98515 0.90033 0.96728 1.20790 0.94223 1.00638 0.99616 1.17735 0.92436 0.86045 0.97573 1.48048 1.20199 1.05114 1.36673 1.23606 1.02753 0.83268 1.03055 1.23297 0.94159 1.01561 1.03678 1.74377 1.22540 0.96820 1.16307 1.82179 0.96151 1.15214 1.10091 1.20893 1.01554 0.89544 1.01093 1.21392 0.92350 1.00037 0.94567 1.22134 0.97632 0.86762 0.95825 1.21626 0.83720 1.03102 0.93569 0.90778 0.93011 0.86729 0.89997 0.88865 0.83728 0.84319 0.78620 0.79178 0.83395 0.83516 0.90770 0.88459 0.88315 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.67 13.92 55.55 0.77 -21.90 16 2 C 0.10 2.79 5.52 -17.37 -0.10 2.70 16 3 Si 0.95 23.89 26.20 -169.99 -4.45 19.44 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.26 -6.75 6.38 56.52 0.36 -6.39 16 6 H -0.32 -7.58 7.11 56.52 0.40 -7.18 16 7 C -0.54 -14.14 9.04 -35.63 -0.32 -14.46 16 8 H 0.09 2.38 6.50 -52.49 -0.34 2.04 16 9 C 0.56 13.93 7.08 -12.99 -0.09 13.84 16 10 O -0.61 -16.66 12.11 5.20 0.06 -16.60 16 11 N -0.63 -12.49 2.94 -173.88 -0.51 -13.00 16 12 C 0.11 1.71 6.53 -3.37 -0.02 1.69 16 13 C 0.08 1.02 5.22 -3.37 -0.02 1.00 16 14 N -0.60 -8.05 2.95 -173.39 -0.51 -8.56 16 15 C 0.56 7.40 7.28 -12.40 -0.09 7.31 16 16 O -0.54 -8.71 16.37 5.30 0.09 -8.62 16 17 C -0.12 -1.22 5.06 -104.95 -0.53 -1.75 16 18 C -0.04 -0.37 9.66 -39.22 -0.38 -0.75 16 19 C -0.13 -0.91 9.46 -39.47 -0.37 -1.29 16 20 C 0.15 1.33 6.70 -83.57 -0.56 0.77 16 21 N -0.32 -2.91 3.85 -10.50 -0.04 -2.95 16 22 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 23 C -0.07 -0.51 11.86 -18.04 -0.21 -0.73 16 24 N -0.23 -2.55 12.33 30.09 0.37 -2.18 16 25 N -0.06 -0.68 13.15 60.35 0.79 0.11 16 26 C -0.11 -0.98 9.66 -39.47 -0.38 -1.36 16 27 C -0.06 -0.58 7.37 -39.22 -0.29 -0.87 16 28 C 0.10 1.45 6.60 -3.60 -0.02 1.43 16 29 C 0.10 1.78 6.58 -3.60 -0.02 1.75 16 30 H 0.28 7.11 8.29 -40.82 -0.34 6.77 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.97 5.53 -51.93 -0.29 1.68 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.95 4.72 -51.93 -0.25 0.70 16 35 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 0.52 6.82 -52.49 -0.36 0.16 16 37 H 0.20 0.33 7.16 -52.48 -0.38 -0.05 16 38 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 1.27 7.72 -52.49 -0.41 0.87 16 40 H 0.15 1.19 6.82 -52.49 -0.36 0.83 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.10 1.37 6.99 -51.93 -0.36 1.00 16 43 H 0.10 1.83 7.02 -51.93 -0.36 1.47 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -35.06 365.19 -6.33 -41.39 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.81 Total: -1.87 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -3.60 Total: 9.24 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.88 Total: -48.48 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.15 Total: -25.22 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.45 Total: 19.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.06 -6.33 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288122039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.834 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds