Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46519 * 2 1 4 4 C 1.50699 * 109.47192 * 240.00190 * 2 1 3 5 5 H 1.08001 * 119.99792 * 245.96737 * 4 2 1 6 6 C 1.37880 * 120.00136 * 65.95864 * 4 2 1 7 7 N 1.31508 * 119.99722 * 9.11355 * 6 4 2 8 8 Si 1.86803 * 119.99863 * 189.11493 * 6 4 2 9 9 H 1.48498 * 109.47105 * 90.00296 * 8 6 4 10 10 H 1.48500 * 109.46796 * 209.99915 * 8 6 4 11 11 H 1.48498 * 109.47031 * 330.00047 * 8 6 4 12 12 N 1.46500 * 109.46979 * 119.99645 * 2 1 3 13 13 C 1.29034 * 119.99986 * 228.77698 * 12 2 1 14 14 O 1.34925 * 119.99606 * 174.70541 * 13 12 2 15 15 C 1.50691 * 120.00445 * 354.43055 * 13 12 2 16 16 C 1.52998 * 109.47313 * 99.94028 * 15 13 12 17 17 H 1.09003 * 109.47208 * 52.60499 * 16 15 13 18 18 C 1.52996 * 109.47229 * 292.60475 * 16 15 13 19 19 C 1.53006 * 109.47307 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46792 * 60.00015 * 19 18 16 21 21 C 1.53005 * 109.47178 * 299.99880 * 20 19 18 22 22 C 1.52999 * 109.46720 * 60.00197 * 21 20 19 23 23 H 1.09002 * 109.46928 * 179.97438 * 22 21 20 24 24 N 1.46500 * 109.47153 * 60.00327 * 22 21 20 25 25 C 1.29847 * 120.00369 * 123.95697 * 24 22 21 26 26 O 1.35031 * 120.00227 * 185.39294 * 25 24 22 27 27 O 1.35035 * 119.99650 * 5.39807 * 25 24 22 28 28 C 1.42902 * 116.99864 * 182.13391 * 27 25 24 29 29 C 1.53002 * 109.47141 * 56.20844 * 28 27 25 30 30 C 1.53002 * 109.47301 * 176.21006 * 28 27 25 31 31 C 1.53004 * 109.46925 * 296.21101 * 28 27 25 32 32 H 1.09002 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47216 * 300.00127 * 1 2 3 34 34 H 1.09005 * 109.47408 * 60.00311 * 1 2 3 35 35 H 0.97012 * 119.99951 * 179.97438 * 7 6 4 36 36 H 0.96702 * 113.99766 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47843 * 219.94803 * 15 13 12 38 38 H 1.09011 * 109.46982 * 339.94377 * 15 13 12 39 39 H 1.09000 * 109.47403 * 299.99457 * 18 16 15 40 40 H 1.08995 * 109.47428 * 60.00244 * 18 16 15 41 41 H 1.08997 * 109.47066 * 300.00442 * 19 18 16 42 42 H 1.08998 * 109.47027 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46843 * 180.02562 * 20 19 18 44 44 H 1.08993 * 109.47687 * 60.00336 * 20 19 18 45 45 H 1.09000 * 109.46811 * 300.00622 * 21 20 19 46 46 H 1.09000 * 109.47024 * 180.02562 * 21 20 19 47 47 H 0.96698 * 114.00389 * 184.41243 * 26 25 24 48 48 H 1.08999 * 109.46646 * 65.51610 * 29 28 27 49 49 H 1.08996 * 109.46970 * 185.51025 * 29 28 27 50 50 H 1.08994 * 109.47401 * 305.51546 * 29 28 27 51 51 H 1.09001 * 109.46740 * 60.00200 * 30 28 27 52 52 H 1.08998 * 109.47340 * 179.97438 * 30 28 27 53 53 H 1.08994 * 109.46820 * 300.00065 * 30 28 27 54 54 H 1.08997 * 109.47353 * 52.10909 * 31 28 27 55 55 H 1.09002 * 109.46471 * 172.10426 * 31 28 27 56 56 H 1.09000 * 109.47244 * 292.10286 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5715 -1.6412 -1.1343 6 6 1.8035 -0.1720 -2.4790 7 7 1.3091 1.0414 -2.5913 8 14 2.1958 -1.1663 -4.0110 9 1 1.0028 -1.9572 -4.4068 10 1 2.5688 -0.2468 -5.1158 11 1 3.3275 -2.0853 -3.7284 12 7 2.0183 -0.6905 1.1962 13 6 2.9276 -0.1440 1.9307 14 8 3.3009 -0.7281 3.0882 15 6 3.5770 1.1433 1.4926 16 6 2.9378 2.3165 2.2380 17 1 2.9619 2.1223 3.3103 18 6 1.4866 2.4806 1.7820 19 6 0.8470 3.6535 2.5279 20 6 1.6250 4.9356 2.2247 21 6 3.0762 4.7716 2.6808 22 6 3.7156 3.5987 1.9349 23 1 4.7496 3.4821 2.2594 24 7 3.6832 3.8605 0.4938 25 6 4.7844 3.8434 -0.1941 26 8 4.7708 4.1909 -1.4989 27 8 5.9430 3.4780 0.3953 28 6 7.1235 3.5271 -0.4086 29 6 7.2945 4.9369 -0.9781 30 6 8.3398 3.1726 0.4492 31 6 7.0000 2.5244 -1.5576 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.1485 1.4204 -3.4698 36 1 3.9872 -0.2453 3.5689 37 1 4.6430 1.1075 1.7173 38 1 3.4363 1.2745 0.4196 39 1 1.4624 2.6750 0.7097 40 1 0.9323 1.5674 1.9983 41 1 0.8712 3.4588 3.6000 42 1 -0.1867 3.7706 2.2026 43 1 1.1697 5.7711 2.7564 44 1 1.6008 5.1304 1.1526 45 1 3.1003 4.5768 3.7529 46 1 3.6303 5.6852 2.4652 47 1 5.6227 4.0832 -1.9435 48 1 7.4802 5.6374 -0.1640 49 1 8.1380 4.9500 -1.6683 50 1 6.3871 5.2274 -1.5075 51 1 8.2180 2.1682 0.8548 52 1 9.2402 3.2096 -0.1640 53 1 8.4277 3.8869 1.2677 54 1 6.0604 2.6897 -2.0848 55 1 7.8326 2.6590 -2.2482 56 1 7.0192 1.5103 -1.1586 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328600521.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = -114.451844 kcal Electronic energy + Delta-G solvation = -35719.345966 eV Core-core repulsion = 31435.883084 eV Total energy + Delta-G solvation = -4283.462882 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 354.235 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.22692 -40.72281 -38.95379 -37.82252 -37.02215 -36.03212 -34.51577 -33.79355 -32.85796 -31.08488 -30.43774 -28.57635 -28.50724 -27.55109 -27.16676 -24.01716 -23.77059 -23.08446 -22.62592 -22.05928 -20.44146 -19.92282 -19.14131 -18.24714 -17.91125 -17.76647 -17.19189 -16.93409 -16.71009 -16.32277 -16.22963 -15.66571 -15.14437 -15.12693 -14.86742 -14.80911 -14.51160 -14.47113 -14.43979 -13.74866 -13.60935 -13.40468 -13.31007 -13.27300 -13.11461 -13.08026 -12.98481 -12.91026 -12.86160 -12.80962 -12.72830 -12.56085 -12.42038 -12.27352 -12.16079 -11.91493 -11.75881 -11.67830 -11.52898 -11.26434 -11.14257 -11.01956 -10.56946 -10.09901 -9.79042 -9.65072 -9.43636 -8.12862 -6.23544 1.32707 1.36408 1.44892 1.51142 1.74832 1.94697 2.26993 2.39667 2.87207 3.14167 3.47616 3.55957 3.60096 3.74714 3.80641 3.88936 4.05226 4.22118 4.29167 4.31000 4.44178 4.50490 4.51568 4.58812 4.61466 4.63624 4.64216 4.69582 4.73135 4.73504 4.79634 4.82485 4.90237 4.94875 4.99841 5.03697 5.08384 5.12659 5.13650 5.16356 5.21765 5.33600 5.36945 5.37686 5.45985 5.51450 5.54239 5.55888 5.70635 5.81210 5.91719 6.29862 6.53221 6.73112 6.80659 7.36826 7.37898 7.74946 8.92145 Molecular weight = 354.24amu Principal moments of inertia in cm(-1) A = 0.007337 B = 0.005259 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.380644 B = 5322.621190 C = 7040.034132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.537 4.537 5 H 0.033 0.967 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.275 1.275 12 N -0.581 5.581 13 C 0.326 3.674 14 O -0.485 6.485 15 C -0.135 4.135 16 C -0.057 4.057 17 H 0.099 0.901 18 C -0.106 4.106 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.096 4.096 22 C 0.106 3.894 23 H 0.069 0.931 24 N -0.555 5.555 25 C 0.497 3.503 26 O -0.493 6.493 27 O -0.363 6.363 28 C 0.086 3.914 29 C -0.203 4.203 30 C -0.130 4.130 31 C -0.203 4.203 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.419 0.581 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.418 0.582 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.064 0.936 51 H 0.061 0.939 52 H 0.105 0.895 53 H 0.073 0.927 54 H 0.048 0.952 55 H 0.115 0.885 56 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 12.924 8.986 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 H 0.057 0.943 4 C -0.575 4.575 5 H 0.052 0.948 6 C -0.174 4.174 7 N -0.536 5.536 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.200 1.200 12 N -0.311 5.311 13 C 0.096 3.904 14 O -0.283 6.283 15 C -0.176 4.176 16 C -0.077 4.077 17 H 0.117 0.883 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.003 4.003 23 H 0.087 0.913 24 N -0.309 5.309 25 C 0.237 3.763 26 O -0.305 6.305 27 O -0.272 6.272 28 C 0.048 3.952 29 C -0.260 4.260 30 C -0.187 4.187 31 C -0.260 4.260 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.275 0.725 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.285 0.715 48 H 0.100 0.900 49 H 0.130 0.870 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.123 0.877 53 H 0.092 0.908 54 H 0.067 0.933 55 H 0.133 0.867 56 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.990 12.062 8.786 21.151 hybrid contribution 1.664 -0.132 -1.544 2.274 sum 16.654 11.929 7.242 21.728 Atomic orbital electron populations 1.21471 0.97928 0.98343 0.98554 1.19282 0.91730 0.93894 0.84822 0.94296 1.21245 1.37053 1.07399 0.91846 0.94821 1.25566 0.95210 0.95484 1.01170 1.70093 1.44853 1.14367 1.24335 0.85722 0.78548 0.78852 0.79513 1.20116 1.19956 1.19959 1.70958 1.15619 1.34849 1.09664 1.22871 0.92390 0.88929 0.86233 1.84577 1.59292 1.52812 1.31614 1.21799 1.00251 0.92973 1.02545 1.21094 0.94746 0.92178 0.99664 0.88307 1.21523 0.95242 0.97563 0.99994 1.21463 0.98390 0.94653 1.00122 1.21351 0.95330 0.96873 1.00906 1.21521 0.95638 0.96528 0.99721 1.21328 0.98569 0.94900 0.85511 0.91303 1.72631 1.17236 1.31496 1.09532 1.22671 0.82773 0.87818 0.83082 1.85080 1.43369 1.82199 1.19840 1.86407 1.15557 1.82253 1.42980 1.22349 0.84515 0.96357 0.92023 1.22959 1.04738 0.94770 1.03542 1.21800 0.94088 1.02706 1.00089 1.22889 1.03649 1.00631 0.98869 0.95746 0.95528 0.93409 0.92821 0.72541 0.89036 0.91609 0.93879 0.94697 0.90582 0.93294 0.90856 0.93699 0.88988 0.91945 0.71524 0.90008 0.87028 0.91779 0.91971 0.87667 0.90778 0.93328 0.86650 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.76 9.25 71.98 0.67 -5.10 16 2 C 0.21 11.78 1.28 44.24 0.06 11.83 16 3 H 0.04 2.28 3.08 -2.39 -0.01 2.27 16 4 C -0.54 -32.69 8.76 25.60 0.22 -32.46 16 5 H 0.03 2.13 7.83 -2.91 -0.02 2.11 16 6 C 0.03 1.56 5.21 84.66 0.44 2.00 16 7 N -0.90 -53.97 12.17 21.45 0.26 -53.71 16 8 Si 0.95 45.98 29.55 68.60 2.03 48.00 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 12 N -0.58 -30.27 9.98 -437.15 -4.36 -34.63 16 13 C 0.33 13.61 6.74 88.52 0.60 14.21 16 14 O -0.48 -16.18 13.61 -81.94 -1.12 -17.29 16 15 C -0.13 -5.00 4.24 29.84 0.13 -4.87 16 16 C -0.06 -1.80 1.98 -10.80 -0.02 -1.83 16 17 H 0.10 2.49 8.13 -2.39 -0.02 2.47 16 18 C -0.11 -4.03 3.65 30.59 0.11 -3.92 16 19 C -0.11 -3.30 5.92 30.60 0.18 -3.12 16 20 C -0.11 -2.96 5.77 30.60 0.18 -2.78 16 21 C -0.10 -2.32 5.64 30.60 0.17 -2.14 16 22 C 0.11 3.06 2.55 44.99 0.11 3.18 16 23 H 0.07 1.79 6.76 -2.39 -0.02 1.78 16 24 N -0.56 -20.04 8.05 -562.15 -4.53 -24.57 16 25 C 0.50 16.11 8.00 130.54 1.04 17.15 16 26 O -0.49 -15.87 11.76 -60.31 -0.71 -16.58 16 27 O -0.36 -9.18 8.22 -60.36 -0.50 -9.68 16 28 C 0.09 1.45 1.11 -10.79 -0.01 1.43 16 29 C -0.20 -2.56 8.13 71.98 0.59 -1.97 16 30 C -0.13 -1.51 8.84 71.98 0.64 -0.88 16 31 C -0.20 -3.75 8.23 71.98 0.59 -3.16 16 32 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 1.33 6.81 -2.39 -0.02 1.31 16 34 H 0.05 2.77 6.93 -2.38 -0.02 2.75 16 35 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 36 H 0.42 7.94 8.82 -74.06 -0.65 7.29 16 37 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.07 3.18 5.55 -2.38 -0.01 3.16 16 39 H 0.04 2.07 6.36 -2.39 -0.02 2.06 16 40 H 0.03 1.49 5.16 -2.39 -0.01 1.48 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 1.54 7.60 -2.39 -0.02 1.52 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.42 9.67 2.89 -74.06 -0.21 9.45 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.11 0.74 8.13 -2.39 -0.02 0.72 16 50 H 0.06 1.02 4.77 -2.39 -0.01 1.01 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.05 1.15 5.19 -2.39 -0.01 1.14 16 55 H 0.11 1.29 8.12 -2.39 -0.02 1.27 16 56 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 Total: -1.00 -81.57 418.08 -3.20 -84.77 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.03 Total: 36.10 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.69 Total: -12.43 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -8.63 Total: -112.90 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -2.32 Total: -43.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -81.57 -3.20 -84.77 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328600521.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.682 kcal (2) G-P(sol) polarization free energy of solvation -81.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds