Wall clock time and date at job start Tue Mar 31 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33996 * 126.90558 * 2 1 4 4 O 1.34425 * 110.15744 * 180.02562 * 3 2 1 5 5 C 1.34928 * 110.89108 * 0.02562 * 4 3 2 6 6 C 1.38942 * 133.32051 * 179.97438 * 5 4 3 7 7 C 1.37737 * 120.05796 * 179.97438 * 6 5 4 8 8 C 1.39322 * 120.62154 * 0.02562 * 7 6 5 9 9 N 1.40142 * 119.93638 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99790 * 146.76800 * 9 8 7 11 11 O 1.21596 * 119.99891 * 354.68537 * 10 9 8 12 12 N 1.34776 * 119.99743 * 174.68759 * 10 9 8 13 13 C 1.40183 * 119.99783 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97227 * 0.25407 * 13 12 10 15 15 C 1.35248 * 107.86666 * 180.12176 * 14 13 12 16 16 C 1.50698 * 126.07218 * 179.90368 * 15 14 13 17 17 N 1.34969 * 107.85771 * 359.64228 * 15 14 13 18 18 C 1.46496 * 125.97595 * 180.19955 * 17 15 14 19 19 C 1.50701 * 109.46741 * 90.00562 * 18 17 15 20 20 H 1.08002 * 120.00125 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99841 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00207 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99803 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47162 * 59.99740 * 23 21 19 25 25 H 1.48497 * 109.46853 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46788 * 299.99548 * 23 21 19 27 27 N 1.31209 * 125.97304 * 179.97438 * 13 12 10 28 28 C 1.38311 * 120.12331 * 0.23106 * 8 7 6 29 29 C 1.39402 * 119.54665 * 359.49857 * 28 8 7 30 30 H 1.09001 * 109.47350 * 89.97081 * 1 2 3 31 31 H 1.09001 * 109.47009 * 209.97727 * 1 2 3 32 32 H 1.09008 * 109.47144 * 329.96854 * 1 2 3 33 33 H 1.08003 * 124.91717 * 0.05201 * 3 2 1 34 34 H 1.08000 * 119.97070 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.68898 * 179.97438 * 7 6 5 36 36 H 0.96999 * 120.00000 * 326.76686 * 9 8 7 37 37 H 0.97001 * 119.99857 * 0.02562 * 12 10 9 38 38 H 1.08001 * 126.06821 * 0.02562 * 14 13 12 39 39 H 1.08992 * 109.47498 * 269.69624 * 16 15 14 40 40 H 1.08998 * 109.47018 * 149.68970 * 16 15 14 41 41 H 1.09003 * 109.46646 * 29.69499 * 16 15 14 42 42 H 1.09000 * 109.47350 * 210.00199 * 18 17 15 43 43 H 1.09003 * 109.47135 * 330.00716 * 18 17 15 44 44 H 0.96993 * 119.99848 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.22879 * 179.74308 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0715 0.0000 4 8 3.5989 0.6841 -0.0006 5 6 3.6963 -0.6617 -0.0015 6 6 4.7734 -1.5394 -0.0028 7 6 4.5551 -2.8993 -0.0031 8 6 3.2588 -3.4100 -0.0025 9 7 3.0533 -4.7963 -0.0033 10 6 1.9891 -5.3200 0.6368 11 8 1.2616 -4.6018 1.2952 12 7 1.7313 -6.6399 0.5470 13 6 0.6248 -7.1848 1.2132 14 6 -0.2960 -6.4746 2.0001 15 6 -1.2094 -7.3560 2.4671 16 6 -2.3816 -7.0314 3.3568 17 7 -0.8880 -8.5770 1.9900 18 6 -1.6176 -9.8209 2.2476 19 6 -2.6738 -10.0119 1.1898 20 1 -2.7903 -9.2797 0.4045 21 6 -3.4923 -11.1210 1.2252 22 7 -3.3508 -12.0124 2.1817 23 14 -4.8021 -11.3574 -0.0857 24 1 -4.1580 -11.4292 -1.4217 25 1 -5.5415 -12.6184 0.1753 26 1 -5.7474 -10.2127 -0.0527 27 7 0.2655 -8.4467 1.2061 28 6 2.1745 -2.5514 -0.0066 29 6 2.3884 -1.1739 -0.0006 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5144 33 1 1.9747 2.0976 0.0008 34 1 5.7827 -1.1550 -0.0037 35 1 5.3967 -3.5762 -0.0045 36 1 3.6769 -5.3788 -0.4645 37 1 2.3119 -7.2128 0.0221 38 1 -0.2772 -5.4132 2.1987 39 1 -2.0820 -7.1238 4.4007 40 1 -3.1973 -7.7241 3.1502 41 1 -2.7132 -6.0113 3.1630 42 1 -0.9234 -10.6609 2.2236 43 1 -2.0907 -9.7683 3.2282 44 1 -3.9263 -12.7928 2.2063 45 1 1.1690 -2.9454 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390835697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:10 Heat of formation + Delta-G solvation = 85.354481 kcal Electronic energy + Delta-G solvation = -29704.721225 eV Core-core repulsion = 25497.858077 eV Total energy + Delta-G solvation = -4206.863148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.61810 -41.00618 -40.07913 -38.00901 -34.96152 -34.68224 -34.10238 -33.36725 -31.48409 -30.85672 -30.36362 -29.12331 -27.37905 -26.65728 -26.34672 -24.16297 -23.14436 -22.55365 -21.47867 -20.43147 -19.99015 -19.64226 -18.34558 -17.72468 -17.06282 -16.69430 -16.59690 -16.31195 -15.88778 -15.57990 -15.17055 -14.66522 -14.53415 -14.37910 -14.07089 -13.91750 -13.64282 -13.37830 -13.23036 -13.01693 -12.75873 -12.67346 -12.48464 -12.34970 -12.20143 -12.12444 -11.69486 -11.43188 -11.26033 -11.11439 -10.83621 -10.58054 -10.37565 -10.24000 -10.14357 -9.99094 -9.71797 -9.57197 -8.65484 -8.43869 -8.12867 -7.94301 -7.45524 -6.26785 -4.34667 0.70160 1.06823 2.11709 2.18303 2.55352 2.61620 2.97488 3.22263 3.26240 3.29859 3.48158 3.49946 3.77674 4.09351 4.26090 4.31696 4.41766 4.67257 4.87451 4.93200 5.05038 5.06734 5.22555 5.35669 5.42473 5.45499 5.56812 5.63903 5.69823 5.85070 5.91989 5.94456 6.05100 6.07604 6.09372 6.17739 6.28010 6.46010 6.47721 6.57689 6.61261 6.91713 6.97420 7.01132 7.06584 7.43845 7.65492 7.79626 7.87535 8.03672 8.40144 8.62600 8.73320 9.31714 10.80365 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.001976 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.381188 B =14169.550021 C =14841.048505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.174 4.174 3 C -0.001 4.001 4 O -0.196 6.196 5 C 0.035 3.965 6 C -0.089 4.089 7 C -0.115 4.115 8 C 0.153 3.847 9 N -0.683 5.683 10 C 0.712 3.288 11 O -0.548 6.548 12 N -0.638 5.638 13 C 0.279 3.721 14 C -0.288 4.288 15 C 0.092 3.908 16 C -0.089 4.089 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.321 5.321 28 C -0.070 4.070 29 C -0.107 4.107 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.206 0.794 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.409 0.591 37 H 0.408 0.592 38 H 0.160 0.840 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.268 0.732 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.896 22.394 -4.117 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.175 4.175 3 C -0.066 4.066 4 O -0.097 6.097 5 C -0.013 4.013 6 C -0.108 4.108 7 C -0.136 4.136 8 C 0.058 3.942 9 N -0.331 5.331 10 C 0.412 3.588 11 O -0.421 6.421 12 N -0.287 5.287 13 C 0.026 3.974 14 C -0.319 4.319 15 C -0.039 4.039 16 C -0.147 4.147 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.151 5.151 28 C -0.091 4.091 29 C -0.109 4.109 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.222 0.778 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.245 0.755 37 H 0.243 0.757 38 H 0.178 0.822 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.558 21.672 -3.844 25.851 hybrid contribution -0.327 -0.238 -0.952 1.034 sum 13.231 21.434 -4.796 25.642 Atomic orbital electron populations 1.20189 0.88435 1.03205 1.02368 1.21171 0.96903 0.90996 1.08466 1.23698 0.79793 0.99550 1.03511 1.83997 1.28119 1.20886 1.76746 1.19576 0.95408 0.81400 1.04892 1.19588 0.96660 0.90346 1.04189 1.20588 0.95381 0.94282 1.03303 1.17132 0.93099 0.81665 1.02271 1.42461 1.28206 1.05745 1.56709 1.15576 0.81487 0.81616 0.80167 1.90905 1.48854 1.58934 1.43456 1.41307 1.28181 1.06967 1.52273 1.18614 0.89629 0.91826 0.97354 1.21229 0.99034 1.01382 1.10278 1.21064 0.97984 0.85947 0.98908 1.20378 0.94550 1.02653 0.97129 1.48991 1.18309 1.08422 1.34181 1.19688 0.90709 0.77703 0.97779 1.21286 1.16458 1.08103 1.11711 0.91795 1.24930 0.97524 0.95140 0.96178 1.69908 1.39313 1.11452 1.32252 0.86412 0.81048 0.77595 0.81620 1.20002 1.20956 1.19912 1.77251 1.03771 1.14952 1.19151 1.20520 0.99815 0.89984 0.98786 1.19642 0.92483 0.93696 1.05056 0.91204 0.90823 0.91331 0.77772 0.84648 0.84341 0.75544 0.75689 0.82216 0.91068 0.89894 0.90609 0.93002 0.92760 0.92185 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.43 36.01 0.38 -0.34 16 2 C -0.17 -1.79 6.35 -102.66 -0.65 -2.44 16 3 C 0.00 -0.01 11.89 29.24 0.35 0.34 16 4 O -0.20 -2.07 10.59 3.64 0.04 -2.03 16 5 C 0.03 0.39 7.41 -38.48 -0.29 0.10 16 6 C -0.09 -0.80 10.05 -39.50 -0.40 -1.20 16 7 C -0.12 -0.99 9.93 -39.36 -0.39 -1.38 16 8 C 0.15 1.69 6.28 -83.63 -0.53 1.16 16 9 N -0.68 -6.97 5.36 -14.20 -0.08 -7.04 16 10 C 0.71 10.21 8.27 -86.92 -0.72 9.49 16 11 O -0.55 -9.62 11.17 5.28 0.06 -9.56 16 12 N -0.64 -9.52 5.45 -15.51 -0.08 -9.61 16 13 C 0.28 5.56 8.11 -154.37 -1.25 4.30 16 14 C -0.29 -5.85 9.52 -39.83 -0.38 -6.23 16 15 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 16 C -0.09 -1.51 9.89 36.00 0.36 -1.15 16 17 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 18 C 0.26 6.57 5.81 -5.20 -0.03 6.54 16 19 C -0.54 -14.65 9.39 -34.44 -0.32 -14.98 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 23 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.32 -7.27 12.59 31.44 0.40 -6.88 16 28 C -0.07 -0.90 8.70 -39.12 -0.34 -1.24 16 29 C -0.11 -1.31 6.38 -105.17 -0.67 -1.98 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.41 2.61 8.83 -40.82 -0.36 2.25 16 37 H 0.41 4.71 8.84 -40.82 -0.36 4.35 16 38 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.14 2.08 6.42 -52.49 -0.34 1.75 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -34.16 388.18 -9.38 -43.54 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.52 Total: 7.50 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -5.55 Total: -5.94 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.76 Total: -55.29 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.16 -9.38 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390835697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.890 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds