Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86790 * 120.00202 * 2 1 4 4 H 1.48507 * 109.47234 * 269.99946 * 3 2 1 5 5 H 1.48496 * 109.47536 * 30.00158 * 3 2 1 6 6 H 1.48504 * 109.47255 * 150.00253 * 3 2 1 7 7 C 1.38817 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99450 * 201.01173 * 7 2 1 9 9 N 1.36930 * 120.00028 * 20.73124 * 7 2 1 10 10 C 1.46499 * 120.00210 * 37.51908 * 9 7 2 11 11 C 1.50700 * 109.47147 * 89.99378 * 10 9 7 12 12 C 1.38260 * 119.99799 * 269.72602 * 11 10 9 13 13 C 1.38225 * 120.02193 * 179.72362 * 12 11 10 14 14 C 1.38240 * 120.00696 * 0.55773 * 13 12 11 15 15 C 1.38302 * 119.98929 * 359.71493 * 14 13 12 16 16 Br 1.89102 * 120.00894 * 180.02562 * 15 14 13 17 17 C 1.38195 * 119.99355 * 90.00593 * 11 10 9 18 18 C 1.46496 * 120.00181 * 217.51514 * 9 7 2 19 19 C 1.52583 * 109.22600 * 57.96303 * 18 9 7 20 20 C 1.53103 * 109.95675 * 169.00277 * 19 18 9 21 21 S 1.81752 * 108.83820 * 63.02593 * 20 19 18 22 22 C 1.81744 * 102.22354 * 306.73551 * 21 20 19 23 23 C 1.52584 * 109.22826 * 296.72741 * 18 9 7 24 24 H 0.97008 * 119.99527 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47533 * 209.99625 * 10 9 7 26 26 H 1.08999 * 109.46985 * 329.99796 * 10 9 7 27 27 H 1.08000 * 119.98640 * 0.02562 * 12 11 10 28 28 H 1.07996 * 119.99725 * 180.27587 * 13 12 11 29 29 H 1.07997 * 120.00228 * 179.74627 * 14 13 12 30 30 H 1.07997 * 120.00554 * 359.97399 * 17 11 10 31 31 H 1.08996 * 109.22621 * 177.32735 * 18 9 7 32 32 H 1.09000 * 109.39195 * 289.15266 * 19 18 9 33 33 H 1.08997 * 109.38790 * 48.86045 * 19 18 9 34 34 H 1.09002 * 109.57900 * 303.22277 * 20 19 18 35 35 H 1.08998 * 109.57755 * 182.83110 * 20 19 18 36 36 H 1.09000 * 109.57295 * 293.46030 * 22 21 20 37 37 H 1.08998 * 109.57944 * 173.06967 * 22 21 20 38 38 H 1.09006 * 109.38834 * 311.14662 * 23 18 9 39 39 H 1.09007 * 109.38824 * 70.94561 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0363 -1.2335 0.3348 9 7 1.3919 -2.3495 -0.4208 10 6 0.4549 -2.3066 -1.5461 11 6 1.2042 -2.5386 -2.8329 12 6 1.7249 -1.4659 -3.5327 13 6 2.4172 -1.6786 -4.7100 14 6 2.5792 -2.9632 -5.1943 15 6 2.0536 -4.0361 -4.4976 16 35 2.2755 -5.7936 -5.1592 17 6 1.3657 -3.8231 -3.3163 18 6 1.6676 -3.6198 0.2547 19 6 1.3234 -3.4866 1.7352 20 6 1.3418 -4.8647 2.4021 21 16 3.0260 -5.5411 2.3050 22 6 3.3888 -5.4168 0.5285 23 6 3.1399 -3.9767 0.0726 24 1 -0.4850 0.8402 -0.0004 25 1 -0.3000 -3.0828 -1.4202 26 1 -0.0294 -1.3306 -1.5786 27 1 1.5949 -0.4618 -3.1567 28 1 2.8276 -0.8408 -5.2539 29 1 3.1165 -3.1289 -6.1163 30 1 0.9553 -4.6607 -2.7718 31 1 1.0513 -4.4026 -0.1874 32 1 2.0549 -2.8402 2.2201 33 1 0.3308 -3.0482 1.8379 34 1 0.6507 -5.5301 1.8846 35 1 1.0464 -4.7688 3.4469 36 1 2.7376 -6.0929 -0.0254 37 1 4.4308 -5.6817 0.3492 38 1 3.4086 -3.8784 -0.9792 39 1 3.7527 -3.2993 0.6675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408516296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 35.489771 kcal Electronic energy + Delta-G solvation = -21870.444993 eV Core-core repulsion = 18757.300472 eV Total energy + Delta-G solvation = -3113.144521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 355.030 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.96031 -37.25962 -34.07904 -32.07836 -31.54210 -30.99487 -30.16169 -28.84831 -26.13419 -25.63751 -22.67915 -22.43375 -21.92110 -20.43081 -19.75112 -16.91614 -16.36828 -15.94813 -15.39761 -14.76305 -14.54929 -14.36576 -14.11795 -13.69295 -13.19433 -13.07606 -13.06480 -12.72105 -12.71095 -12.38383 -12.18451 -11.87475 -11.34341 -11.12369 -10.98315 -10.89131 -10.79479 -10.60831 -10.49053 -10.25554 -10.13741 -10.03620 -9.85272 -9.76127 -9.28296 -8.64264 -8.45166 -8.18919 -7.35414 -6.76683 -5.95877 -3.52411 1.57251 1.75122 1.88302 2.15502 2.88877 3.25653 3.35381 3.36904 4.07099 4.36348 5.03770 5.14994 5.19534 5.26282 5.29784 5.37682 5.51036 5.61922 5.63958 5.77636 5.79488 5.88621 5.92522 6.05661 6.12278 6.18411 6.19405 6.38657 6.50828 6.58670 6.62618 6.67693 6.82347 6.98878 7.09554 7.17926 7.31907 7.48785 7.70776 8.35530 9.00945 9.62252 10.20177 11.04814 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.005145 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.669455 B = 5440.721411 C = 7961.309045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.062 0.938 9 N -0.567 5.567 10 C 0.174 3.826 11 C -0.064 4.064 12 C -0.083 4.083 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.091 4.091 16 Br -0.077 7.077 17 C -0.093 4.093 18 C 0.173 3.827 19 C -0.119 4.119 20 C -0.071 4.071 21 S -0.296 6.296 22 C -0.069 4.069 23 C -0.128 4.128 24 H 0.257 0.743 25 H 0.035 0.965 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -9.214 -7.436 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.185 4.185 3 Si 0.721 3.279 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.284 5.284 10 C 0.048 3.952 11 C -0.068 4.068 12 C -0.102 4.102 13 C -0.139 4.139 14 C -0.135 4.135 15 C -0.170 4.170 16 Br 0.008 6.992 17 C -0.113 4.113 18 C 0.066 3.934 19 C -0.160 4.160 20 C -0.220 4.220 21 S -0.071 6.071 22 C -0.218 4.218 23 C -0.168 4.168 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.895 -10.122 -6.798 12.532 hybrid contribution -0.187 1.698 -0.884 1.923 sum 2.708 -8.425 -7.682 11.719 Atomic orbital electron populations 1.69965 1.05477 1.25968 1.51086 1.25136 0.94948 0.98602 0.99771 0.86464 0.79695 0.83794 0.77954 1.21189 1.21673 1.20155 1.18957 0.94063 0.85198 1.39932 0.92012 1.43752 1.51467 1.03122 1.30098 1.20118 0.90049 1.03649 0.81430 1.21336 0.97258 0.91295 0.96943 1.21280 0.95644 0.99922 0.93375 1.21117 0.99763 0.95967 0.97051 1.20846 1.00923 0.91854 0.99844 1.21650 1.06294 0.89729 0.99300 1.96600 1.97049 1.18211 1.87367 1.20979 0.98598 0.97705 0.94059 1.20312 0.92663 0.89027 0.91380 1.22075 1.03775 0.93149 0.96973 1.23508 0.93613 1.00485 1.04380 1.86522 1.23088 1.83708 1.13803 1.23421 1.04238 1.01274 0.92887 1.22195 1.00225 0.92735 1.01679 0.93343 0.94611 0.87372 0.85560 0.86124 0.86211 0.86230 0.93639 0.90639 0.90444 0.90682 0.88700 0.90600 0.88814 0.91328 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.73 11.42 55.49 0.63 -22.10 16 2 C 0.02 0.40 4.97 -17.43 -0.09 0.31 16 3 Si 0.89 19.98 29.60 -169.99 -5.03 14.95 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.25 -6.03 8.35 -15.06 -0.13 -6.16 16 8 H 0.06 1.54 7.24 -52.49 -0.38 1.16 16 9 N -0.57 -12.11 2.32 -167.52 -0.39 -12.50 16 10 C 0.17 3.58 5.39 -5.19 -0.03 3.55 16 11 C -0.06 -1.18 5.46 -104.63 -0.57 -1.75 16 12 C -0.08 -1.49 9.70 -39.58 -0.38 -1.87 16 13 C -0.12 -1.85 10.05 -39.59 -0.40 -2.24 16 14 C -0.11 -1.69 9.79 -39.56 -0.39 -2.07 16 15 C -0.09 -1.40 6.22 -39.52 -0.25 -1.65 16 16 Br -0.08 -1.03 33.70 -68.01 -2.29 -3.32 16 17 C -0.09 -1.55 9.44 -39.56 -0.37 -1.92 16 18 C 0.17 3.21 2.36 -68.36 -0.16 3.05 16 19 C -0.12 -2.17 4.77 -26.89 -0.13 -2.30 16 20 C -0.07 -1.08 6.46 37.21 0.24 -0.84 16 21 S -0.30 -4.62 22.33 -107.50 -2.40 -7.02 16 22 C -0.07 -1.03 6.45 37.21 0.24 -0.79 16 23 C -0.13 -2.21 4.85 -26.89 -0.13 -2.34 16 24 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 26 H 0.11 2.54 5.43 -51.93 -0.28 2.26 16 27 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.05 0.82 7.70 -51.93 -0.40 0.42 16 32 H 0.07 1.52 7.87 -51.93 -0.41 1.11 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.39 7.46 -51.92 -0.39 1.00 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -24.31 347.90 -12.40 -36.72 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.63 Total: 5.06 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.54 Total: -17.02 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.24 Total: -34.60 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -2.40 Total: -7.02 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -2.29 Total: -3.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -24.31 -12.40 -36.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408516296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.209 kcal (2) G-P(sol) polarization free energy of solvation -24.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds