Wall clock time and date at job start Tue Mar 31 2020 05:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00196 * 2 1 4 4 N 1.46501 * 109.47048 * 124.99669 * 3 2 1 5 5 C 1.33815 * 120.26608 * 89.97706 * 4 3 2 6 6 O 1.21649 * 126.59167 * 359.97395 * 5 4 3 7 7 S 1.77234 * 106.81508 * 179.97438 * 5 4 3 8 8 C 1.77488 * 94.54839 * 0.02562 * 7 5 4 9 9 C 1.36284 * 127.95103 * 180.02562 * 8 7 5 10 10 C 1.41845 * 120.00036 * 172.81120 * 9 8 7 11 11 C 1.37824 * 126.82470 * 321.63606 * 10 9 8 12 12 N 1.35868 * 109.47174 * 180.02562 * 11 10 9 13 13 C 1.36939 * 124.77104 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99974 * 156.73829 * 13 12 11 15 15 C 1.38958 * 120.00070 * 336.46365 * 13 12 11 16 16 N 1.31356 * 119.99661 * 346.39831 * 15 13 12 17 17 Si 1.86793 * 120.00213 * 166.40797 * 15 13 12 18 18 H 1.48504 * 109.47407 * 59.99554 * 17 15 13 19 19 H 1.48500 * 109.47563 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47113 * 299.99553 * 17 15 13 21 21 C 1.38423 * 110.45268 * 0.24397 * 12 11 10 22 22 C 1.39016 * 132.94140 * 179.75620 * 21 12 11 23 23 C 1.37932 * 119.95179 * 179.97438 * 22 21 12 24 24 C 1.38639 * 120.59950 * 0.02667 * 23 22 21 25 25 C 1.37942 * 120.25829 * 359.59340 * 24 23 22 26 26 C 1.39124 * 119.69097 * 0.58729 * 25 24 23 27 27 C 1.32257 * 120.26097 * 270.29680 * 4 3 2 28 28 O 1.21782 * 122.46617 * 0.03834 * 27 4 3 29 29 H 1.07995 * 120.00137 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99680 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99680 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47365 * 4.99535 * 3 2 1 33 33 H 1.08996 * 109.47358 * 244.99426 * 3 2 1 34 34 H 1.08003 * 120.00340 * 352.80265 * 9 8 7 35 35 H 1.07999 * 125.26179 * 0.03969 * 11 10 9 36 36 H 0.97002 * 119.99639 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.02640 * 0.02562 * 22 21 12 38 38 H 1.07997 * 119.69925 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.87076 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.15409 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2417 0.8703 0.9897 6 8 4.7314 0.4026 -0.0209 7 16 5.0440 1.0716 2.5571 8 6 3.6257 1.7850 3.3506 9 6 3.5124 2.2103 4.6404 10 6 2.3443 2.8965 5.0610 11 6 1.6246 3.8226 4.3372 12 7 0.5715 4.2569 5.0777 13 6 -0.3483 5.1816 4.6602 14 1 -1.3303 5.2069 5.1087 15 6 -0.0161 6.0909 3.6633 16 7 1.2391 6.2478 3.3092 17 14 -1.3544 7.0905 2.8272 18 1 -2.0647 7.9120 3.8401 19 1 -0.7434 7.9813 1.8082 20 1 -2.3190 6.1733 2.1689 21 6 0.5627 3.6378 6.3157 22 6 -0.2804 3.7344 7.4168 23 6 -0.0343 2.9744 8.5413 24 6 1.0498 2.1114 8.5864 25 6 1.8926 1.9966 7.5005 26 6 1.6573 2.7607 6.3618 27 6 2.6047 1.8066 2.3030 28 8 1.4806 2.2340 2.4945 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 4.3119 2.0249 5.3425 35 1 1.8611 4.1519 3.3362 36 1 1.4710 6.8828 2.6136 37 1 -1.1279 4.4034 7.3916 38 1 -0.6917 3.0529 9.3945 39 1 1.2316 1.5221 9.4730 40 1 2.7369 1.3241 7.5376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409075652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:42 Heat of formation + Delta-G solvation = 49.770173 kcal Electronic energy + Delta-G solvation = -28455.639731 eV Core-core repulsion = 24521.860557 eV Total energy + Delta-G solvation = -3933.779174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20761 -40.44025 -38.33722 -36.48835 -35.71056 -34.37592 -33.86840 -32.76251 -30.61824 -29.02419 -28.20516 -27.33251 -25.40176 -24.28361 -23.07076 -21.90252 -20.84430 -20.63102 -19.87372 -18.92675 -17.93122 -17.85460 -16.79427 -16.40013 -15.88683 -15.61037 -15.28472 -14.91919 -14.68118 -14.61745 -14.57824 -13.82834 -13.71356 -13.67271 -13.43231 -13.27030 -13.07223 -12.65914 -12.22024 -12.09603 -11.73178 -11.52654 -11.45112 -11.39468 -11.22012 -11.08647 -10.86745 -10.60053 -10.49667 -10.33321 -10.05643 -9.68701 -9.51087 -9.48918 -9.27588 -8.86528 -7.87751 -7.48133 -7.09149 -6.57863 -4.61511 0.92584 1.14139 1.85707 1.98417 2.08936 2.27535 2.48366 2.86836 2.91640 2.93875 3.16050 3.37380 3.60965 3.87211 4.45473 4.50652 4.65294 4.76360 4.85557 5.08922 5.29488 5.45851 5.49050 5.59335 5.61271 5.65849 5.77831 5.86456 5.97911 6.12612 6.23656 6.41883 6.53640 6.60899 6.65273 6.72148 6.77758 6.83425 6.88945 7.06147 7.16593 7.22234 7.24371 7.35040 7.63073 7.72987 8.10729 8.15099 8.60691 9.01331 9.98377 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.008472 B = 0.004584 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.063226 B = 6106.119101 C = 7945.080847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.179 4.179 3 C 0.129 3.871 4 N -0.566 5.566 5 C 0.536 3.464 6 O -0.463 6.463 7 S -0.059 6.059 8 C -0.326 4.326 9 C 0.174 3.826 10 C -0.291 4.291 11 C 0.196 3.804 12 N -0.264 5.264 13 C -0.344 4.344 14 H 0.112 0.888 15 C 0.048 3.952 16 N -0.836 5.836 17 Si 0.942 3.058 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.263 1.263 21 C 0.048 3.952 22 C -0.096 4.096 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.100 4.100 26 C -0.061 4.061 27 C 0.552 3.448 28 O -0.464 6.464 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.180 0.820 36 H 0.287 0.713 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -5.815 -0.433 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.198 4.198 3 C 0.005 3.995 4 N -0.310 5.310 5 C 0.217 3.783 6 O -0.340 6.340 7 S 0.177 5.823 8 C -0.442 4.442 9 C 0.148 3.852 10 C -0.298 4.298 11 C 0.048 3.952 12 N 0.078 4.922 13 C -0.472 4.472 14 H 0.130 0.870 15 C -0.163 4.163 16 N -0.465 5.465 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.188 1.188 21 C -0.056 4.056 22 C -0.116 4.116 23 C -0.160 4.160 24 C -0.164 4.164 25 C -0.119 4.119 26 C -0.065 4.065 27 C 0.344 3.656 28 O -0.338 6.338 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.197 0.803 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.603 -5.728 -0.696 5.989 hybrid contribution -1.673 0.791 -0.878 2.048 sum -0.069 -4.938 -1.574 5.183 Atomic orbital electron populations 1.23927 0.95614 1.02373 0.97636 1.23040 0.96334 0.98002 1.02398 1.20870 0.92480 0.97657 0.88471 1.46381 1.13344 1.57252 1.14047 1.22064 0.83630 0.79442 0.93154 1.90852 1.67533 1.44595 1.31002 1.85675 1.17704 1.73478 1.05409 1.22717 0.95796 1.25360 1.00309 1.19861 0.93093 0.81958 0.90316 1.17789 1.03917 1.12014 0.96071 1.22782 0.85937 0.91304 0.95204 1.40176 1.18525 1.25901 1.07638 1.19901 0.94894 1.11186 1.21214 0.87008 1.25570 0.97576 0.96522 0.96639 1.69814 1.16647 1.32946 1.27133 0.85738 0.79640 0.78955 0.79148 1.18970 1.19926 1.18800 1.18559 0.99176 0.99803 0.88079 1.20045 0.99067 1.00722 0.91727 1.20535 0.99101 0.99001 0.97399 1.20679 0.96669 1.00989 0.98075 1.20247 0.99676 0.99788 0.92145 1.18876 0.96063 0.98276 0.93319 1.17522 0.88957 0.77685 0.81427 1.90967 1.20034 1.42858 1.79896 0.88077 0.87894 0.87147 0.87921 0.88313 0.85435 0.80296 0.90236 0.86921 0.86939 0.87118 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 14.32 29.02 0.42 -1.56 16 2 C -0.18 -2.44 9.84 -36.03 -0.35 -2.79 16 3 C 0.13 1.91 5.70 -5.19 -0.03 1.88 16 4 N -0.57 -9.66 2.46 -122.51 -0.30 -9.96 16 5 C 0.54 9.07 8.40 53.63 0.45 9.52 16 6 O -0.46 -8.30 17.39 5.23 0.09 -8.21 16 7 S -0.06 -0.94 23.18 -107.50 -2.49 -3.43 16 8 C -0.33 -5.89 6.45 -37.05 -0.24 -6.13 16 9 C 0.17 3.13 10.02 -38.91 -0.39 2.74 16 10 C -0.29 -6.21 5.52 -104.79 -0.58 -6.79 16 11 C 0.20 4.68 7.09 -15.92 -0.11 4.56 16 12 N -0.26 -6.44 2.88 -59.15 -0.17 -6.61 16 13 C -0.34 -8.34 9.84 -15.00 -0.15 -8.49 16 14 H 0.11 2.54 7.87 -52.49 -0.41 2.13 16 15 C 0.05 1.13 5.30 -17.49 -0.09 1.03 16 16 N -0.84 -20.28 11.09 55.49 0.62 -19.66 16 17 Si 0.94 17.88 29.57 -169.99 -5.03 12.85 16 18 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 C 0.05 1.08 6.72 -83.80 -0.56 0.52 16 22 C -0.10 -1.87 9.92 -39.40 -0.39 -2.26 16 23 C -0.14 -2.35 10.02 -39.55 -0.40 -2.75 16 24 C -0.15 -2.35 10.04 -39.54 -0.40 -2.74 16 25 C -0.10 -1.77 10.09 -39.36 -0.40 -2.17 16 26 C -0.06 -1.29 6.33 -104.89 -0.66 -1.95 16 27 C 0.55 10.66 7.29 -14.13 -0.10 10.56 16 28 O -0.46 -10.23 12.54 5.12 0.06 -10.17 16 29 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.10 1.55 7.16 -51.93 -0.37 1.18 16 33 H 0.10 1.31 7.70 -51.93 -0.40 0.91 16 34 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.18 4.52 5.33 -52.49 -0.28 4.24 16 36 H 0.29 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -27.01 363.94 -9.70 -36.70 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -3.97 Total: 9.82 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.99 Total: -6.83 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.14 Total: -36.23 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.16 Total: -18.37 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.49 Total: -3.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.01 -9.70 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409075652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.474 kcal (2) G-P(sol) polarization free energy of solvation -27.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds