Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 120.00365 * 2 1 4 4 C 1.38213 * 120.00187 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99799 * 359.78351 * 4 3 2 6 6 C 1.38216 * 120.00123 * 0.49299 * 5 4 3 7 7 C 1.38216 * 119.99933 * 180.02562 * 2 1 3 8 8 C 1.50693 * 119.99825 * 359.97356 * 7 2 1 9 9 H 1.08999 * 115.55251 * 334.44248 * 8 7 2 10 10 C 1.53004 * 117.49877 * 188.77281 * 8 7 2 11 11 C 1.53002 * 117.50081 * 120.11402 * 8 7 2 12 12 H 1.08997 * 117.49574 * 359.97438 * 11 8 7 13 13 C 1.50698 * 117.50129 * 214.98125 * 11 8 7 14 14 O 1.21289 * 119.99891 * 353.82251 * 13 11 8 15 15 N 1.34770 * 120.00230 * 173.82586 * 13 11 8 16 16 C 1.37136 * 119.99849 * 5.50886 * 15 13 11 17 17 H 1.08001 * 119.99893 * 55.91100 * 16 15 13 18 18 C 1.38883 * 119.99674 * 235.90243 * 16 15 13 19 19 N 1.31424 * 120.00238 * 8.87812 * 18 16 15 20 20 Si 1.86808 * 119.99845 * 188.87469 * 18 16 15 21 21 H 1.48502 * 109.46916 * 90.00394 * 20 18 16 22 22 H 1.48495 * 109.46855 * 210.00368 * 20 18 16 23 23 H 1.48500 * 109.46896 * 330.00214 * 20 18 16 24 24 C 1.39813 * 120.00141 * 185.50952 * 15 13 11 25 25 C 1.38955 * 120.06465 * 354.48687 * 24 15 13 26 26 C 1.38069 * 119.93820 * 179.76889 * 25 24 15 27 27 C 1.38421 * 120.06186 * 0.51158 * 26 25 24 28 28 Cl 1.73608 * 119.93709 * 179.72266 * 27 26 25 29 29 C 1.38420 * 120.13230 * 359.74375 * 27 26 25 30 30 C 1.38075 * 120.05829 * 0.02562 * 29 27 26 31 31 H 1.09000 * 109.46897 * 269.98325 * 1 2 3 32 32 H 1.08999 * 109.46950 * 29.97363 * 1 2 3 33 33 H 1.09000 * 109.47134 * 149.97649 * 1 2 3 34 34 H 1.07997 * 119.99726 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.99964 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.00027 * 180.25446 * 5 4 3 37 37 H 1.07997 * 120.00060 * 179.76108 * 6 5 4 38 38 H 1.08996 * 117.50036 * 0.02562 * 10 8 7 39 39 H 1.09003 * 117.50189 * 145.02250 * 10 8 7 40 40 H 0.97000 * 119.99807 * 184.98178 * 19 18 16 41 41 H 1.08006 * 120.03206 * 359.97438 * 25 24 15 42 42 H 1.08001 * 119.97110 * 180.25340 * 26 25 24 43 43 H 1.07996 * 119.97035 * 179.97438 * 29 27 26 44 44 H 1.08003 * 120.02912 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0056 6 6 3.5806 -1.1970 -0.0002 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5020 -0.0005 9 1 0.4413 -2.4656 0.4241 10 6 2.2529 -3.7846 0.2059 11 6 1.6804 -3.4541 -1.1748 12 1 2.3804 -3.1362 -1.9475 13 6 0.5082 -4.2700 -1.6554 14 8 -0.5403 -4.2425 -1.0464 15 7 0.6249 -5.0304 -2.7620 16 6 1.8400 -5.1510 -3.3861 17 1 2.6994 -5.4990 -2.8322 18 6 1.9655 -4.8256 -4.7305 19 7 0.9718 -4.2398 -5.3603 20 14 3.5467 -5.2206 -5.6434 21 1 3.4497 -6.5784 -6.2368 22 1 3.7576 -4.2226 -6.7226 23 1 4.6897 -5.1746 -4.6964 24 6 -0.4929 -5.6963 -3.2738 25 6 -1.6971 -5.6690 -2.5809 26 6 -2.8006 -6.3234 -3.0910 27 6 -2.7054 -7.0152 -4.2862 28 17 -4.0931 -7.8431 -4.9210 29 6 -1.5058 -7.0487 -4.9760 30 6 -0.4002 -6.3921 -4.4730 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6584 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0001 0.0102 37 1 4.1205 -2.1323 -0.0001 38 1 3.3297 -3.6844 0.3421 39 1 1.7814 -4.5921 0.7660 40 1 1.0309 -4.0779 -6.3149 41 1 -1.7707 -5.1334 -1.6458 42 1 -3.7379 -6.2991 -2.5550 43 1 -1.4343 -7.5896 -5.9080 44 1 0.5356 -6.4188 -5.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598846856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = 49.572845 kcal Electronic energy + Delta-G solvation = -28512.480471 eV Core-core repulsion = 24614.763466 eV Total energy + Delta-G solvation = -3897.717005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23012 -39.42335 -37.78312 -36.21189 -35.53960 -34.94735 -32.70988 -32.07549 -30.48621 -29.94527 -28.82035 -26.76912 -25.39796 -24.13594 -23.61627 -21.92707 -21.28444 -21.11163 -19.97357 -19.24837 -17.85117 -16.98743 -16.14950 -15.94669 -15.58612 -15.26794 -14.75885 -14.67921 -14.30205 -14.12333 -13.78128 -13.63002 -13.41486 -13.24454 -12.95603 -12.62390 -12.57692 -12.17567 -12.12771 -12.00745 -11.99217 -11.62912 -11.57121 -11.29285 -11.15628 -10.99350 -10.83130 -10.72635 -10.67802 -10.49705 -10.31573 -10.14507 -9.98344 -9.30247 -8.79311 -8.66138 -8.40718 -8.22546 -8.06027 -6.99062 -6.43684 -4.65740 1.42871 1.49691 2.05189 2.30962 2.88136 2.96709 3.06410 3.08985 3.35157 3.80469 3.85116 4.25553 4.43166 4.61054 4.85229 4.92129 4.95973 5.04155 5.12556 5.23867 5.36167 5.42017 5.48796 5.68580 5.71270 5.73195 5.75978 5.79580 5.92438 5.94340 6.05941 6.19166 6.31853 6.34581 6.35855 6.40568 6.53106 6.59742 6.64953 6.68045 6.85453 6.89179 7.04877 7.12610 7.16464 7.25405 7.46675 7.49979 7.91886 8.22953 8.72851 9.08512 9.46975 10.36793 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.003198 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.480667 B = 8754.677966 C =10375.836458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.122 4.122 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.042 4.042 8 C -0.100 4.100 9 H 0.124 0.876 10 C -0.151 4.151 11 C -0.134 4.134 12 H 0.132 0.868 13 C 0.524 3.476 14 O -0.564 6.564 15 N -0.377 5.377 16 C -0.367 4.367 17 H 0.096 0.904 18 C 0.055 3.945 19 N -0.840 5.840 20 Si 0.914 3.086 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.264 1.264 24 C 0.192 3.808 25 C -0.183 4.183 26 C -0.105 4.105 27 C -0.080 4.080 28 Cl -0.111 7.111 29 C -0.109 4.109 30 C -0.095 4.095 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.276 0.724 41 H 0.184 0.816 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 4.451 6.711 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.133 4.133 7 C -0.042 4.042 8 C -0.119 4.119 9 H 0.142 0.858 10 C -0.188 4.188 11 C -0.155 4.155 12 H 0.150 0.850 13 C 0.317 3.683 14 O -0.449 6.449 15 N -0.083 5.083 16 C -0.494 4.494 17 H 0.114 0.886 18 C -0.155 4.155 19 N -0.472 5.472 20 Si 0.739 3.261 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 C 0.094 3.906 25 C -0.203 4.203 26 C -0.125 4.125 27 C -0.107 4.107 28 Cl -0.083 7.083 29 C -0.129 4.129 30 C -0.116 4.116 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.200 0.800 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.706 4.591 6.780 8.624 hybrid contribution 0.706 -0.185 -1.122 1.339 sum 3.412 4.406 5.658 7.942 Atomic orbital electron populations 1.20860 0.91148 1.03424 1.02200 1.19749 0.96225 0.92348 0.99248 1.20978 0.94238 0.97261 1.01489 1.21056 0.94294 0.97858 1.01284 1.21054 0.99595 0.92501 1.01202 1.21080 0.93692 0.98314 1.00259 1.19069 0.93018 0.92993 0.99128 1.21100 1.00390 0.87612 1.02764 0.85836 1.23045 0.99602 0.98336 0.97811 1.22143 1.00150 1.00882 0.92329 0.85043 1.19954 0.87499 0.79052 0.81824 1.90159 1.29370 1.66682 1.58664 1.40908 1.07767 1.37035 1.22543 1.19369 0.86708 1.48575 0.94753 0.88610 1.25645 0.98353 0.93445 0.98041 1.70021 1.32018 1.34459 1.10667 0.86119 0.81741 0.78738 0.79524 1.19615 1.20469 1.18799 1.18361 0.87756 0.91425 0.93074 1.22802 0.90937 1.02336 1.04205 1.20795 0.98917 0.98337 0.94417 1.20732 0.87981 1.04047 0.97962 1.98278 1.44204 1.78542 1.87287 1.20683 0.91421 1.01161 0.99642 1.21021 0.98998 0.96660 0.94968 0.91302 0.91823 0.90388 0.86334 0.86491 0.86354 0.85770 0.88119 0.88260 0.91295 0.80015 0.86507 0.86551 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.33 36.00 0.34 -1.21 16 2 C -0.08 -1.06 5.88 -104.62 -0.62 -1.68 16 3 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 4 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 5 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 6 C -0.12 -1.56 9.30 -39.58 -0.37 -1.92 16 7 C -0.04 -0.62 5.61 -104.63 -0.59 -1.21 16 8 C -0.10 -1.59 4.66 -91.77 -0.43 -2.02 16 9 H 0.12 2.05 6.44 -51.93 -0.33 1.71 16 10 C -0.15 -2.25 9.57 -26.69 -0.26 -2.50 16 11 C -0.13 -2.49 5.00 -91.73 -0.46 -2.94 16 12 H 0.13 2.57 7.44 -51.93 -0.39 2.18 16 13 C 0.52 11.63 7.35 -10.99 -0.08 11.55 16 14 O -0.56 -12.94 12.67 5.55 0.07 -12.87 16 15 N -0.38 -8.92 2.62 -58.98 -0.15 -9.07 16 16 C -0.37 -8.50 7.27 -14.94 -0.11 -8.61 16 17 H 0.10 2.12 7.85 -52.49 -0.41 1.71 16 18 C 0.06 1.27 3.51 -17.49 -0.06 1.21 16 19 N -0.84 -20.83 11.37 55.49 0.63 -20.20 16 20 Si 0.91 17.86 29.57 -169.99 -5.03 12.84 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 C 0.19 4.55 6.05 -83.68 -0.51 4.04 16 25 C -0.18 -4.10 9.06 -39.38 -0.36 -4.46 16 26 C -0.11 -2.12 9.82 -39.58 -0.39 -2.51 16 27 C -0.08 -1.58 6.32 -39.45 -0.25 -1.83 16 28 Cl -0.11 -1.89 28.95 -51.86 -1.50 -3.39 16 29 C -0.11 -2.24 9.82 -39.57 -0.39 -2.63 16 30 C -0.10 -2.17 7.87 -39.37 -0.31 -2.48 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.08 1.17 6.65 -51.93 -0.35 0.82 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.51 6.03 -52.49 -0.32 1.19 16 38 H 0.10 1.27 6.18 -51.93 -0.32 0.95 16 39 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.28 6.53 8.32 -40.82 -0.34 6.19 16 41 H 0.18 4.18 4.51 -56.34 -0.25 3.93 16 42 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.14 3.31 5.15 -52.48 -0.27 3.04 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -26.11 375.90 -11.47 -37.58 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.15 Total: 14.32 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -6.01 Total: -24.88 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.48 Total: -29.27 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -1.50 Total: -3.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.11 -11.47 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598846856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.155 kcal (2) G-P(sol) polarization free energy of solvation -26.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds