Wall clock time and date at job start Tue Mar 31 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99679 * 2 1 4 4 C 1.53003 * 109.46777 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47033 * 65.00481 * 4 3 2 6 6 C 1.46497 * 119.99905 * 274.99688 * 5 4 3 7 7 C 1.50701 * 109.46963 * 281.12801 * 6 5 4 8 8 H 1.07998 * 119.99922 * 4.22065 * 7 6 5 9 9 C 1.37881 * 120.00034 * 184.22978 * 7 6 5 10 10 N 1.31518 * 119.99731 * 5.27985 * 9 7 6 11 11 Si 1.86794 * 120.00146 * 185.28014 * 9 7 6 12 12 H 1.48505 * 109.46967 * 65.02842 * 11 9 7 13 13 H 1.48502 * 109.47268 * 185.02794 * 11 9 7 14 14 H 1.48500 * 109.47133 * 305.03056 * 11 9 7 15 15 S 1.65601 * 119.99868 * 94.99855 * 5 4 3 16 16 O 1.42099 * 106.40423 * 337.57771 * 15 5 4 17 17 O 1.42105 * 106.39824 * 204.66352 * 15 5 4 18 18 N 1.65590 * 107.22140 * 91.12550 * 15 5 4 19 19 C 1.46502 * 120.00231 * 59.63440 * 18 15 5 20 20 C 1.50699 * 109.47220 * 165.58943 * 19 18 15 21 21 C 1.32570 * 119.99535 * 230.96133 * 20 19 18 22 22 C 1.47809 * 120.00282 * 349.92468 * 21 20 19 23 23 C 1.39960 * 120.55736 * 310.56130 * 22 21 20 24 24 C 1.38378 * 118.29273 * 179.72255 * 23 22 21 25 25 C 1.38329 * 119.30249 * 0.02562 * 24 23 22 26 26 N 1.31901 * 121.07768 * 359.97438 * 25 24 23 27 27 C 1.31709 * 121.87056 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46977 * 299.99525 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.99886 * 1 2 3 30 30 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47194 * 60.00720 * 3 2 1 32 32 H 1.09000 * 109.47388 * 300.00301 * 3 2 1 33 33 H 1.08997 * 109.47761 * 305.00306 * 4 3 2 34 34 H 1.09008 * 109.46818 * 185.00202 * 4 3 2 35 35 H 1.09001 * 109.47038 * 41.12382 * 6 5 4 36 36 H 1.08994 * 109.47192 * 161.12551 * 6 5 4 37 37 H 0.96998 * 119.99511 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00181 * 239.64103 * 18 15 5 39 39 H 1.08996 * 109.47243 * 45.58616 * 19 18 15 40 40 H 1.09003 * 109.47360 * 285.58970 * 19 18 15 41 41 H 1.07996 * 120.00292 * 50.95944 * 20 19 18 42 42 H 1.08005 * 119.99521 * 169.92950 * 21 20 19 43 43 H 1.08000 * 120.85318 * 359.70309 * 23 22 21 44 44 H 1.08003 * 120.34361 * 180.02562 * 24 23 22 45 45 H 1.08009 * 119.46077 * 179.97438 * 25 24 23 46 46 H 1.08010 * 119.71581 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0003 -0.8948 -1.3783 7 6 5.2286 -1.4371 -0.6940 8 1 5.8855 -0.7701 -0.1554 9 6 5.5139 -2.7846 -0.7556 10 7 4.7736 -3.5803 -1.4963 11 14 6.9516 -3.4802 0.2131 12 1 6.6869 -3.3322 1.6668 13 1 7.1202 -4.9186 -0.1154 14 1 8.1907 -2.7428 -0.1420 15 16 4.4452 1.5133 -2.5263 16 8 3.8387 2.7827 -2.3261 17 8 4.2505 0.7353 -3.6994 18 7 6.0785 1.7480 -2.3867 19 6 6.9869 0.5987 -2.3933 20 6 8.3997 1.0763 -2.6098 21 6 9.1490 0.5234 -3.5533 22 6 8.6876 -0.7011 -4.2406 23 6 8.2309 -1.8008 -3.5051 24 6 7.8044 -2.9210 -4.1966 25 6 7.8430 -2.9184 -5.5793 26 7 8.2786 -1.8671 -6.2463 27 6 8.6948 -0.7782 -5.6335 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5683 0.8408 34 1 3.9784 2.1767 0.0890 35 1 3.1092 -1.3148 -0.9118 36 1 4.0214 -1.1684 -2.4332 37 1 4.9741 -4.5283 -1.5393 38 1 6.4337 2.6465 -2.3004 39 1 6.7062 -0.0817 -3.1972 40 1 6.9217 0.0784 -1.4376 41 1 8.8017 1.8691 -1.9963 42 1 10.0968 0.9676 -3.8197 43 1 8.2123 -1.7759 -2.4255 44 1 7.4451 -3.7881 -3.6622 45 1 7.5111 -3.7915 -6.1216 46 1 9.0441 0.0628 -6.2143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598897744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:17 Heat of formation + Delta-G solvation = -63.346030 kcal Electronic energy + Delta-G solvation = -31263.230602 eV Core-core repulsion = 27087.644606 eV Total energy + Delta-G solvation = -4175.585997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.80512 -37.72756 -36.71167 -36.22327 -35.33564 -35.18547 -33.34478 -32.62268 -31.62434 -29.67892 -29.48749 -26.81120 -25.72398 -25.48445 -23.07232 -22.89440 -22.85878 -21.76837 -19.45174 -18.61753 -17.19567 -17.06872 -16.72700 -16.49185 -16.21866 -15.84145 -15.65874 -15.50236 -14.96636 -14.83718 -14.54813 -14.41420 -14.14629 -13.49274 -13.41386 -13.15646 -12.85564 -12.66445 -12.62204 -12.25389 -12.06588 -12.02138 -11.91510 -11.65003 -11.52146 -11.32316 -11.20999 -11.10784 -10.91624 -10.86133 -10.63142 -10.41133 -10.15876 -9.94001 -9.82391 -9.30220 -9.28390 -9.10153 -8.85515 -8.48017 -8.27584 -8.01450 -6.11618 -4.16325 1.11026 1.33010 1.65541 2.37149 3.15906 3.24640 3.27378 3.59180 4.14435 4.17874 4.19346 4.30264 4.70091 4.90636 5.01802 5.16227 5.20457 5.25599 5.32971 5.35769 5.43792 5.45411 5.55318 5.57196 5.66434 5.70137 5.79626 5.87381 5.91545 5.94428 6.08214 6.12131 6.32028 6.35399 6.44309 6.52504 6.59512 6.68026 6.84108 7.03403 7.33905 7.47557 7.54965 7.58617 7.74758 7.88523 8.18906 8.26108 8.86192 9.45817 10.95708 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.004865 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.273273 B = 5753.554787 C = 7143.897330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.243 3.757 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.274 1.274 15 S 2.783 3.217 16 O -1.005 7.005 17 O -0.977 6.977 18 N -1.128 6.128 19 C 0.133 3.867 20 C -0.140 4.140 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.052 4.052 24 C -0.152 4.152 25 C 0.095 3.905 26 N -0.490 5.490 27 C 0.103 3.897 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.405 0.595 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 7.531 0.872 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.826 5.826 6 C 0.121 3.879 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.132 4.132 10 N -0.517 5.517 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.200 1.200 15 S 2.791 3.209 16 O -0.989 6.989 17 O -0.961 6.961 18 N -0.886 5.886 19 C 0.008 3.992 20 C -0.160 4.160 21 C -0.135 4.135 22 C -0.117 4.117 23 C -0.078 4.078 24 C -0.172 4.172 25 C -0.062 4.062 26 N -0.198 5.198 27 C -0.055 4.055 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.237 0.763 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.170 0.830 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.566 7.232 -0.837 8.106 hybrid contribution 0.917 0.024 2.014 2.213 sum 4.483 7.255 1.177 8.609 Atomic orbital electron populations 1.22700 0.82415 1.02418 0.99108 1.88103 1.18393 1.27050 1.95145 1.23103 0.95460 0.85155 0.99814 1.21063 0.91291 0.97747 0.88960 1.57619 1.78554 1.19408 1.26977 1.19312 0.98134 0.71512 0.98936 1.21483 1.09344 0.92934 1.33977 0.92076 1.24855 0.96354 0.96964 0.95058 1.69944 1.39069 1.04867 1.37802 0.86954 0.83006 0.78479 0.81273 1.20245 1.21083 1.19954 1.01814 0.72668 0.72306 0.74153 1.93532 1.75283 1.42961 1.87134 1.93592 1.84838 1.71308 1.46333 1.55973 1.26311 1.14174 1.92171 1.20800 0.86163 0.87192 1.05032 1.23468 0.95449 1.00271 0.96777 1.21508 1.00320 0.94997 0.96651 1.20018 1.01660 0.95200 0.94833 1.21907 0.93034 0.91801 1.01058 1.22133 0.99548 0.99869 0.95641 1.22733 0.95324 0.96314 0.91784 1.67558 1.10654 1.00419 1.41170 1.22789 0.96155 0.95596 0.90984 0.94800 0.94629 0.89873 0.93182 0.93372 0.89059 0.90265 0.92950 0.93087 0.92627 0.76277 0.89530 0.88070 0.86088 0.85740 0.84351 0.84430 0.83041 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.70 8.99 -35.23 -0.32 -7.01 16 3 C 0.04 0.70 6.28 37.16 0.23 0.93 16 4 C 0.14 2.31 5.75 -4.04 -0.02 2.28 16 5 N -0.98 -19.72 2.83 -115.66 -0.33 -20.05 16 6 C 0.24 5.81 5.36 -5.19 -0.03 5.78 16 7 C -0.54 -12.89 7.67 -34.44 -0.26 -13.15 16 8 H 0.06 1.39 6.49 -52.49 -0.34 1.05 16 9 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 10 N -0.88 -23.33 13.29 55.43 0.74 -22.59 16 11 Si 0.88 18.95 29.54 -169.99 -5.02 13.92 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 S 2.78 54.90 6.05 -107.50 -0.65 54.25 16 16 O -1.00 -20.04 17.07 -57.17 -0.98 -21.01 16 17 O -0.98 -23.26 16.35 -57.17 -0.93 -24.20 16 18 N -1.13 -18.24 6.04 -11.66 -0.07 -18.31 16 19 C 0.13 2.25 5.17 -5.19 -0.03 2.22 16 20 C -0.14 -1.85 9.62 -36.22 -0.35 -2.20 16 21 C -0.11 -1.48 9.75 -37.58 -0.37 -1.85 16 22 C -0.12 -1.79 4.67 -104.87 -0.49 -2.28 16 23 C -0.05 -0.90 7.86 -38.89 -0.31 -1.20 16 24 C -0.15 -2.60 10.10 -39.50 -0.40 -3.00 16 25 C 0.09 1.53 11.17 -17.49 -0.20 1.34 16 26 N -0.49 -8.24 10.35 -12.92 -0.13 -8.38 16 27 C 0.10 1.58 10.95 -17.13 -0.19 1.39 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.56 8.05 -51.93 -0.42 1.14 16 34 H 0.08 1.13 7.58 -51.92 -0.39 0.74 16 35 H 0.05 1.36 6.56 -51.93 -0.34 1.02 16 36 H 0.05 1.38 6.85 -51.93 -0.36 1.03 16 37 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.41 5.24 8.64 -34.46 -0.30 4.94 16 39 H 0.09 1.72 5.36 -51.93 -0.28 1.44 16 40 H 0.10 1.84 5.28 -51.93 -0.27 1.56 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.14 2.45 7.64 -52.49 -0.40 2.05 16 44 H 0.14 2.31 8.06 -52.48 -0.42 1.88 16 45 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 46 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -31.90 394.39 -9.60 -41.49 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.46 Total: 12.45 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.39 Total: -6.51 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: 0.20 Total: -69.33 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -2.23 Total: -52.22 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 54.90 SS G_CDS: -0.65 Total: 54.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.90 -9.60 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598897744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.852 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds