Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38162 * 119.97487 * 2 1 4 4 C 1.38705 * 119.94828 * 180.23206 * 3 2 1 5 5 O 1.35897 * 120.06037 * 179.79010 * 4 3 2 6 6 C 1.42895 * 117.00407 * 179.71991 * 5 4 3 7 7 C 1.50703 * 109.47650 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00441 * 180.02562 * 7 6 5 10 10 C 1.39236 * 119.99715 * 184.74234 * 9 7 6 11 11 C 1.39478 * 119.82780 * 213.63120 * 10 9 7 12 12 C 1.36380 * 120.16829 * 179.75733 * 11 10 9 13 13 C 1.40871 * 119.82440 * 0.52230 * 12 11 10 14 14 C 1.41155 * 120.16251 * 179.71516 * 13 12 11 15 15 H 1.07998 * 120.00273 * 203.83775 * 14 13 12 16 16 C 1.39905 * 120.00222 * 23.83693 * 14 13 12 17 17 N 1.30876 * 119.99850 * 15.60304 * 16 14 13 18 18 Si 1.86793 * 120.00187 * 195.60408 * 16 14 13 19 19 H 1.48500 * 109.46955 * 90.00255 * 18 16 14 20 20 H 1.48500 * 109.47398 * 209.99846 * 18 16 14 21 21 H 1.48498 * 109.47351 * 329.99893 * 18 16 14 22 22 C 1.40870 * 119.67318 * 359.73227 * 13 12 11 23 23 C 1.36372 * 119.82776 * 0.02562 * 22 13 12 24 24 C 1.38752 * 119.88478 * 359.50758 * 4 3 2 25 25 C 1.38126 * 119.94759 * 0.25698 * 24 4 3 26 26 C 1.38243 * 119.97039 * 179.73816 * 2 1 3 27 27 N 1.48004 * 119.94741 * 0.02694 * 26 2 1 28 28 O 1.21798 * 119.99922 * 172.24592 * 27 26 2 29 29 O 1.21801 * 119.99924 * 352.25023 * 27 26 2 30 30 H 1.09001 * 109.46917 * 262.69450 * 1 2 3 31 31 H 1.08994 * 109.47140 * 22.69542 * 1 2 3 32 32 H 1.09003 * 109.46854 * 142.69710 * 1 2 3 33 33 H 1.08008 * 120.02567 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47608 * 300.00017 * 6 5 4 35 35 H 1.09005 * 109.47154 * 59.99832 * 6 5 4 36 36 H 0.97001 * 119.99690 * 4.74164 * 9 7 6 37 37 H 1.08003 * 119.92362 * 0.02562 * 11 10 9 38 38 H 1.08000 * 120.09075 * 180.24598 * 12 11 10 39 39 H 0.96998 * 120.00393 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.08285 * 179.97438 * 22 13 12 41 41 H 1.08003 * 119.91114 * 179.97438 * 23 22 13 42 42 H 1.08008 * 120.02389 * 180.27631 * 24 4 3 43 43 H 1.07995 * 119.97300 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1962 -0.0049 5 8 4.2656 2.3721 -0.0092 6 6 5.6925 2.2952 -0.0078 7 6 6.2707 3.6869 -0.0138 8 8 5.5332 4.6498 -0.0182 9 7 7.6070 3.8616 -0.0141 10 6 8.1415 5.1438 0.0801 11 6 9.3311 5.4499 -0.5807 12 6 9.8582 6.7049 -0.4972 13 6 9.2038 7.6902 0.2680 14 6 9.7462 8.9898 0.3642 15 1 9.5008 9.6162 1.2091 16 6 10.6018 9.4665 -0.6348 17 7 10.6634 8.8549 -1.7902 18 14 11.6562 10.9758 -0.3196 19 1 12.9614 10.5572 0.2518 20 1 11.8839 11.6965 -1.5979 21 1 10.9618 11.8737 0.6379 22 6 8.0056 7.3719 0.9369 23 6 7.4881 6.1139 0.8399 24 6 4.2752 -0.0071 0.0006 25 6 3.5805 -1.2010 0.0055 26 6 2.1977 -1.1976 0.0055 27 7 1.4558 -2.4782 0.0107 28 8 2.0550 -3.5297 -0.1268 29 8 0.2461 -2.4807 0.1525 30 1 -0.3633 -0.1307 1.0193 31 1 -0.3633 0.9480 -0.3965 32 1 -0.3633 -0.8175 -0.6228 33 1 1.6573 2.1322 -0.0004 34 1 6.0271 1.7663 0.8845 35 1 6.0284 1.7589 -0.8954 36 1 8.1964 3.0940 -0.0801 37 1 9.8339 4.6923 -1.1637 38 1 10.7773 6.9416 -1.0126 39 1 11.2563 9.1856 -2.4831 40 1 7.4986 8.1220 1.5257 41 1 6.5697 5.8683 1.3525 42 1 5.3553 -0.0102 0.0013 43 1 4.1178 -2.1378 0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000094672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -21.981070 kcal Electronic energy + Delta-G solvation = -29075.904721 eV Core-core repulsion = 24668.949830 eV Total energy + Delta-G solvation = -4406.954891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50663 -41.00410 -39.76653 -38.30685 -37.22671 -36.88555 -34.64792 -33.31835 -33.16942 -31.88793 -29.97699 -29.58681 -28.67658 -27.71186 -26.02752 -24.94180 -23.21443 -22.50042 -21.72393 -20.93868 -19.95043 -19.33924 -18.91395 -18.60041 -17.85724 -17.57636 -17.37025 -16.79829 -16.34202 -16.14042 -15.32091 -15.25359 -14.78972 -14.59672 -14.14438 -14.05586 -13.98194 -13.88558 -13.25543 -13.17499 -12.97566 -12.77931 -12.67945 -12.23462 -11.94809 -11.78039 -11.74202 -11.65453 -11.44890 -11.38022 -11.21350 -11.10788 -10.99346 -10.84215 -10.14641 -9.74529 -9.70778 -9.57691 -9.27618 -9.25065 -9.07803 -7.67286 -7.13643 -6.85060 -4.42573 -0.41253 0.41413 1.03404 1.16234 2.14355 2.34127 2.76518 2.83902 2.98161 3.01092 3.04086 3.20195 3.54983 3.83960 3.85838 3.89699 4.08442 4.40580 4.45706 4.49786 4.53422 4.65648 4.74885 4.86353 5.04759 5.15777 5.19138 5.36633 5.46107 5.58463 5.63621 5.65658 6.06421 6.18011 6.28180 6.52781 6.60667 6.77913 6.91895 7.04455 7.15035 7.42069 7.46931 7.55930 7.72751 7.91193 8.08888 8.15526 8.43850 8.52924 8.76863 8.85812 10.05822 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.039002 B = 0.001470 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.736965 B =19039.209883 C =19475.270537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.026 3.974 3 C -0.157 4.157 4 C 0.195 3.805 5 O -0.271 6.271 6 C 0.036 3.964 7 C 0.496 3.504 8 O -0.506 6.506 9 N -0.641 5.641 10 C -0.016 4.016 11 C -0.109 4.109 12 C -0.155 4.155 13 C 0.105 3.895 14 C -0.452 4.452 15 H 0.080 0.920 16 C 0.072 3.928 17 N -0.791 5.791 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.217 4.217 23 C -0.074 4.074 24 C -0.220 4.220 25 C -0.006 4.006 26 C -0.095 4.095 27 N 0.041 4.959 28 O -0.177 6.177 29 O -0.165 6.165 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.396 0.604 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 -17.677 1.813 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 C -0.176 4.176 4 C 0.147 3.853 5 O -0.181 6.181 6 C -0.043 4.043 7 C 0.280 3.720 8 O -0.381 6.381 9 N -0.285 5.285 10 C -0.108 4.108 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.102 3.898 14 C -0.481 4.481 15 H 0.098 0.902 16 C -0.146 4.146 17 N -0.416 5.416 18 Si 0.737 3.263 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.237 4.237 23 C -0.094 4.094 24 C -0.240 4.240 25 C -0.025 4.025 26 C -0.179 4.179 27 N 0.555 4.445 28 O -0.388 6.388 29 O -0.378 6.378 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.175 0.825 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.171 0.829 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.978 -16.156 1.578 19.054 hybrid contribution 0.914 -0.248 -0.102 0.952 sum -9.064 -16.403 1.477 18.799 Atomic orbital electron populations 1.21323 0.87968 1.04713 1.04854 1.19620 0.98032 0.89479 0.90420 1.20376 0.90867 0.98521 1.07820 1.19422 0.92099 0.85093 0.88712 1.86262 1.19330 1.26494 1.86000 1.22745 0.79006 0.98334 1.04166 1.19763 0.83326 0.89451 0.79420 1.90777 1.58715 1.41179 1.47387 1.42750 1.05057 1.08761 1.71947 1.17079 0.99683 0.84664 1.09348 1.20217 0.96023 0.97177 0.99549 1.21009 1.01568 0.90935 1.03968 1.17708 0.89384 0.93029 0.89642 1.19633 1.23116 0.99198 1.06162 0.90215 1.25969 0.95881 0.98684 0.94024 1.69824 1.30730 1.38076 1.02948 0.86236 0.80384 0.80840 0.78863 1.19202 1.20226 1.18525 1.20647 0.98208 0.95897 1.08913 1.20233 0.98390 0.93448 0.97294 1.21301 1.01531 0.90636 1.10505 1.20775 0.90845 1.00077 0.90775 1.20793 0.92352 0.83310 1.21457 1.43447 1.01035 1.02636 0.97378 1.94536 1.70272 1.20114 1.53920 1.94472 0.96567 1.93776 1.53014 0.88910 0.90401 0.88303 0.82468 0.88416 0.88479 0.77005 0.89075 0.85543 0.90717 0.88579 0.88081 0.82939 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.63 36.01 0.31 -0.59 16 2 C 0.03 0.22 5.88 -104.65 -0.62 -0.40 16 3 C -0.16 -1.33 9.61 -39.44 -0.38 -1.71 16 4 C 0.20 1.76 6.69 -39.22 -0.26 1.50 16 5 O -0.27 -3.10 9.67 -39.33 -0.38 -3.48 16 6 C 0.04 0.34 5.22 36.01 0.19 0.53 16 7 C 0.50 7.61 7.64 -10.98 -0.08 7.52 16 8 O -0.51 -10.43 14.17 -14.35 -0.20 -10.63 16 9 N -0.64 -9.81 5.31 -9.74 -0.05 -9.86 16 10 C -0.02 -0.33 6.28 -83.57 -0.53 -0.86 16 11 C -0.11 -2.35 9.89 -39.79 -0.39 -2.74 16 12 C -0.15 -3.80 8.65 -39.26 -0.34 -4.14 16 13 C 0.11 2.71 5.59 -106.80 -0.60 2.12 16 14 C -0.45 -11.57 9.05 -37.85 -0.34 -11.91 16 15 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 16 C 0.07 1.74 5.19 -17.33 -0.09 1.65 16 17 N -0.79 -19.59 10.77 55.55 0.60 -18.99 16 18 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16 23 C -0.07 -1.69 8.57 -39.79 -0.34 -2.03 16 24 C -0.22 -1.53 9.04 -39.43 -0.36 -1.89 16 25 C -0.01 -0.04 9.55 -39.60 -0.38 -0.42 16 26 C -0.09 -0.88 6.82 -79.93 -0.55 -1.43 16 27 N 0.04 0.45 4.45 33.97 0.15 0.60 16 28 O -0.18 -2.11 18.47 -29.46 -0.54 -2.65 16 29 O -0.16 -1.86 15.39 -29.46 -0.45 -2.32 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16 32 H 0.10 0.74 5.96 -51.93 -0.31 0.43 16 33 H 0.16 1.18 8.05 -52.48 -0.42 0.76 16 34 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.40 4.27 8.81 -40.82 -0.36 3.91 16 37 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.13 3.18 6.01 -52.49 -0.32 2.86 16 39 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 40 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.10 2.27 6.42 -52.48 -0.34 1.94 16 42 H 0.15 0.64 6.30 -52.48 -0.33 0.31 16 43 H 0.16 0.92 7.63 -52.49 -0.40 0.52 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -31.86 374.16 -9.91 -41.77 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.50 Total: 7.49 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -5.13 Total: -20.45 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.70 Total: -28.25 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.58 Total: -19.08 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.86 -9.91 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.793 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds