Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38162 * 119.97487 * 2 1 4 4 C 1.38705 * 119.94828 * 180.23206 * 3 2 1 5 5 O 1.35897 * 120.06037 * 179.79010 * 4 3 2 6 6 C 1.42895 * 117.00407 * 179.71991 * 5 4 3 7 7 C 1.50703 * 109.47650 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00441 * 180.02562 * 7 6 5 10 10 C 1.39236 * 119.99715 * 184.74234 * 9 7 6 11 11 C 1.39478 * 119.82780 * 213.63120 * 10 9 7 12 12 C 1.36380 * 120.16829 * 179.75733 * 11 10 9 13 13 C 1.40871 * 119.82440 * 0.52230 * 12 11 10 14 14 C 1.41155 * 120.16251 * 179.71516 * 13 12 11 15 15 H 1.07998 * 120.00273 * 203.83775 * 14 13 12 16 16 C 1.39905 * 120.00222 * 23.83693 * 14 13 12 17 17 N 1.30876 * 119.99850 * 15.60304 * 16 14 13 18 18 Si 1.86793 * 120.00187 * 195.60408 * 16 14 13 19 19 H 1.48500 * 109.46955 * 90.00255 * 18 16 14 20 20 H 1.48500 * 109.47398 * 209.99846 * 18 16 14 21 21 H 1.48498 * 109.47351 * 329.99893 * 18 16 14 22 22 C 1.40870 * 119.67318 * 359.73227 * 13 12 11 23 23 C 1.36372 * 119.82776 * 0.02562 * 22 13 12 24 24 C 1.38752 * 119.88478 * 359.50758 * 4 3 2 25 25 C 1.38126 * 119.94759 * 0.25698 * 24 4 3 26 26 C 1.38243 * 119.97039 * 179.73816 * 2 1 3 27 27 N 1.48004 * 119.94741 * 0.02694 * 26 2 1 28 28 O 1.21798 * 119.99922 * 172.24592 * 27 26 2 29 29 O 1.21801 * 119.99924 * 352.25023 * 27 26 2 30 30 H 1.09001 * 109.46917 * 262.69450 * 1 2 3 31 31 H 1.08994 * 109.47140 * 22.69542 * 1 2 3 32 32 H 1.09003 * 109.46854 * 142.69710 * 1 2 3 33 33 H 1.08008 * 120.02567 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47608 * 300.00017 * 6 5 4 35 35 H 1.09005 * 109.47154 * 59.99832 * 6 5 4 36 36 H 0.97001 * 119.99690 * 4.74164 * 9 7 6 37 37 H 1.08003 * 119.92362 * 0.02562 * 11 10 9 38 38 H 1.08000 * 120.09075 * 180.24598 * 12 11 10 39 39 H 0.96998 * 120.00393 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.08285 * 179.97438 * 22 13 12 41 41 H 1.08003 * 119.91114 * 179.97438 * 23 22 13 42 42 H 1.08008 * 120.02389 * 180.27631 * 24 4 3 43 43 H 1.07995 * 119.97300 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1962 -0.0049 5 8 4.2656 2.3721 -0.0092 6 6 5.6925 2.2952 -0.0078 7 6 6.2707 3.6869 -0.0138 8 8 5.5332 4.6498 -0.0182 9 7 7.6070 3.8616 -0.0141 10 6 8.1415 5.1438 0.0801 11 6 9.3311 5.4499 -0.5807 12 6 9.8582 6.7049 -0.4972 13 6 9.2038 7.6902 0.2680 14 6 9.7462 8.9898 0.3642 15 1 9.5008 9.6162 1.2091 16 6 10.6018 9.4665 -0.6348 17 7 10.6634 8.8549 -1.7902 18 14 11.6562 10.9758 -0.3196 19 1 12.9614 10.5572 0.2518 20 1 11.8839 11.6965 -1.5979 21 1 10.9618 11.8737 0.6379 22 6 8.0056 7.3719 0.9369 23 6 7.4881 6.1139 0.8399 24 6 4.2752 -0.0071 0.0006 25 6 3.5805 -1.2010 0.0055 26 6 2.1977 -1.1976 0.0055 27 7 1.4558 -2.4782 0.0107 28 8 2.0550 -3.5297 -0.1268 29 8 0.2461 -2.4807 0.1525 30 1 -0.3633 -0.1307 1.0193 31 1 -0.3633 0.9480 -0.3965 32 1 -0.3633 -0.8175 -0.6228 33 1 1.6573 2.1322 -0.0004 34 1 6.0271 1.7663 0.8845 35 1 6.0284 1.7589 -0.8954 36 1 8.1964 3.0940 -0.0801 37 1 9.8339 4.6923 -1.1637 38 1 10.7773 6.9416 -1.0126 39 1 11.2563 9.1856 -2.4831 40 1 7.4986 8.1220 1.5257 41 1 6.5697 5.8683 1.3525 42 1 5.3553 -0.0102 0.0013 43 1 4.1178 -2.1378 0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000094672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -39.128794 kcal Electronic energy + Delta-G solvation = -29076.648302 eV Core-core repulsion = 24668.949830 eV Total energy + Delta-G solvation = -4407.698472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27982 -41.81448 -40.98470 -39.33747 -38.64634 -37.70491 -36.23989 -34.82508 -33.89205 -32.61168 -31.55414 -31.17749 -29.78764 -28.53116 -26.77980 -26.54110 -23.89443 -23.67110 -23.04204 -22.46700 -21.32868 -20.07199 -19.73492 -19.40353 -19.22698 -18.68656 -18.57434 -17.71130 -17.56825 -17.05608 -17.00925 -16.00267 -15.83317 -15.66189 -15.56096 -15.01280 -14.75290 -14.64333 -14.57955 -14.46765 -14.01767 -13.93133 -13.68269 -13.60862 -13.38214 -13.21815 -12.86948 -12.78286 -12.52137 -12.49820 -12.37969 -12.33908 -12.21736 -11.78791 -11.73738 -11.46817 -11.20396 -10.89638 -10.68524 -10.27517 -9.91197 -9.49057 -8.89376 -8.61982 -6.30695 -1.16437 -0.14803 0.29052 0.43915 0.74389 1.12526 1.34318 1.39097 1.42049 1.52134 1.71811 2.16053 2.20668 2.54045 2.73392 3.26151 3.33815 3.46909 3.62768 3.72005 3.82356 3.97013 4.02029 4.04732 4.27724 4.38625 4.46988 4.50881 4.61395 4.65697 4.79466 4.90353 4.91862 5.03873 5.07312 5.09333 5.12600 5.28605 5.40311 5.45261 5.63669 5.84939 5.91654 6.01727 6.08801 6.34874 6.56827 6.62307 6.66564 6.91161 6.96456 7.31300 8.30421 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.039002 B = 0.001470 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.736965 B =19039.209883 C =19475.270537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.023 3.977 3 C -0.165 4.165 4 C 0.188 3.812 5 O -0.301 6.301 6 C 0.044 3.956 7 C 0.494 3.506 8 O -0.565 6.565 9 N -0.632 5.632 10 C 0.006 3.994 11 C -0.108 4.108 12 C -0.174 4.174 13 C 0.072 3.928 14 C -0.493 4.493 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.822 5.822 18 Si 0.985 3.015 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.262 1.262 22 C -0.236 4.236 23 C -0.088 4.088 24 C -0.205 4.205 25 C -0.004 4.004 26 C -0.110 4.110 27 N 0.041 4.959 28 O -0.199 6.199 29 O -0.176 6.176 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.424 0.576 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.290 0.710 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.190 0.810 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 -19.625 1.512 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.022 3.978 3 C -0.184 4.184 4 C 0.141 3.859 5 O -0.212 6.212 6 C -0.034 4.034 7 C 0.282 3.718 8 O -0.443 6.443 9 N -0.279 5.279 10 C -0.088 4.088 11 C -0.128 4.128 12 C -0.194 4.194 13 C 0.070 3.930 14 C -0.522 4.522 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.448 5.448 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.256 4.256 23 C -0.108 4.108 24 C -0.224 4.224 25 C -0.023 4.023 26 C -0.195 4.195 27 N 0.551 4.449 28 O -0.407 6.407 29 O -0.389 6.389 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.262 0.738 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.207 0.793 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.952 -18.201 1.275 20.323 hybrid contribution 0.453 0.230 -0.004 0.508 sum -8.499 -17.971 1.271 19.920 Atomic orbital electron populations 1.21350 0.87283 1.05232 1.05005 1.19742 0.98687 0.89205 0.90176 1.20490 0.91308 0.98625 1.07991 1.19536 0.92100 0.85107 0.89204 1.86210 1.20370 1.28015 1.86607 1.22833 0.78234 0.94022 1.08266 1.20834 0.82557 0.91546 0.76890 1.90767 1.60027 1.43938 1.49614 1.42618 1.06020 1.07530 1.71729 1.17121 0.98616 0.86480 1.06536 1.20517 0.96167 0.96912 0.99191 1.21032 1.01629 0.92190 1.04526 1.18028 0.90222 0.93888 0.90899 1.19833 1.25499 0.99763 1.07112 0.90842 1.26755 0.96391 1.01627 0.93276 1.69859 1.31521 1.39776 1.03658 0.85156 0.78505 0.76908 0.78871 1.18292 1.19236 1.18604 1.20769 0.98408 0.96904 1.09552 1.20361 0.98615 0.93636 0.98147 1.21613 1.03131 0.89106 1.08577 1.21061 0.90079 1.01250 0.89931 1.21054 0.93217 0.82451 1.22743 1.43720 1.01034 1.03163 0.96958 1.94518 1.70234 1.21018 1.54897 1.94462 0.97106 1.94014 1.53277 0.88494 0.88833 0.89166 0.82145 0.84119 0.84155 0.73801 0.85309 0.86665 0.89946 0.89027 0.88058 0.79288 0.80883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.63 71.24 0.61 -1.07 16 2 C 0.02 0.36 5.88 -19.88 -0.12 0.24 16 3 C -0.17 -2.51 9.61 22.36 0.21 -2.30 16 4 C 0.19 2.79 6.69 22.50 0.15 2.94 16 5 O -0.30 -5.91 9.67 -73.35 -0.71 -6.62 16 6 C 0.04 0.60 5.22 71.24 0.37 0.97 16 7 C 0.49 13.68 7.64 87.66 0.67 14.35 16 8 O -0.57 -22.81 14.17 16.00 0.23 -22.59 16 9 N -0.63 -17.17 5.31 -303.11 -1.61 -18.78 16 10 C 0.01 0.23 6.28 38.56 0.24 0.48 16 11 C -0.11 -4.47 9.89 22.13 0.22 -4.25 16 12 C -0.17 -8.65 8.65 22.48 0.19 -8.46 16 13 C 0.07 3.87 5.59 -21.27 -0.12 3.75 16 14 C -0.49 -26.36 9.05 23.39 0.21 -26.15 16 15 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 16 C 0.03 1.69 5.19 85.24 0.44 2.14 16 17 N -0.82 -41.59 10.77 21.82 0.24 -41.35 16 18 Si 0.98 37.20 29.59 68.60 2.03 39.23 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 C -0.24 -12.04 9.74 22.48 0.22 -11.82 16 23 C -0.09 -4.05 8.57 22.13 0.19 -3.86 16 24 C -0.21 -1.91 9.04 22.37 0.20 -1.70 16 25 C 0.00 -0.05 9.55 22.26 0.21 0.16 16 26 C -0.11 -1.86 6.82 36.39 0.25 -1.61 16 27 N 0.04 0.88 4.45 -46.44 -0.21 0.68 16 28 O -0.20 -4.61 18.47 18.89 0.35 -4.26 16 29 O -0.18 -3.94 15.39 18.88 0.29 -3.65 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 0.85 8.03 -2.39 -0.02 0.84 16 32 H 0.09 1.33 5.96 -2.39 -0.01 1.31 16 33 H 0.16 2.23 8.05 -2.91 -0.02 2.21 16 34 H 0.14 0.82 7.66 -2.39 -0.02 0.80 16 35 H 0.14 0.81 7.66 -2.38 -0.02 0.79 16 36 H 0.42 6.99 8.81 -92.71 -0.82 6.17 16 37 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.12 5.93 6.01 -2.91 -0.02 5.91 16 39 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 40 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.10 4.63 6.42 -2.91 -0.02 4.61 16 42 H 0.19 0.28 6.30 -2.91 -0.02 0.26 16 43 H 0.17 1.42 7.63 -2.91 -0.02 1.40 16 Total: -1.00 -74.81 374.16 5.05 -69.76 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.28 Total: 23.77 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 4.17 Total: -36.19 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -1.58 Total: -59.46 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: 0.16 Total: -37.11 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -74.81 5.05 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.634 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds