Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48500 * 109.46735 * 239.99476 * 3 2 1 5 5 H 1.48497 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46774 * 119.99948 * 3 2 1 7 7 C 1.39890 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99483 * 197.93621 * 7 2 1 9 9 C 1.41210 * 120.00456 * 17.93848 * 7 2 1 10 10 C 1.40833 * 120.17816 * 24.54431 * 9 7 2 11 11 C 1.36439 * 119.81362 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18206 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81632 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99937 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47164 * 179.97438 * 14 13 12 16 16 N 1.31876 * 119.62730 * 89.99518 * 15 14 13 17 17 C 1.31853 * 121.74135 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.79023 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.41275 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47085 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47295 * 119.99936 * 19 18 17 22 22 F 1.39893 * 109.47082 * 240.00208 * 19 18 17 23 23 C 1.38607 * 119.17685 * 0.22980 * 18 17 16 24 24 C 1.38312 * 119.63047 * 270.02289 * 15 14 13 25 25 Cl 1.73603 * 120.42612 * 359.97438 * 24 15 14 26 26 C 1.39311 * 120.36666 * 0.25088 * 12 11 10 27 27 C 1.36438 * 120.18369 * 359.48557 * 26 12 11 28 28 H 0.96998 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.09460 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.90817 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.47202 * 59.99398 * 14 13 12 32 32 H 1.08995 * 109.46804 * 299.99297 * 14 13 12 33 33 H 1.07999 * 119.60282 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.79702 * 179.74637 * 23 18 17 35 35 H 1.08000 * 119.90754 * 179.72803 * 26 12 11 36 36 H 1.07999 * 120.09341 * 180.25674 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2886 9 6 1.3537 -2.4049 -0.3756 10 6 0.2247 -2.3585 -1.2161 11 6 -0.4023 -3.5160 -1.5744 12 6 0.0711 -4.7415 -1.1108 13 8 -0.5585 -5.8880 -1.4713 14 6 -0.0219 -7.1105 -0.9618 15 6 -0.8454 -8.2684 -1.4640 16 7 -0.5219 -8.8540 -2.6005 17 6 -1.2134 -9.8697 -3.0789 18 6 -2.3124 -10.3602 -2.3991 19 6 -3.0970 -11.5212 -2.9539 20 9 -2.5264 -11.9344 -4.1626 21 9 -3.0714 -12.5805 -2.0405 22 9 -4.4210 -11.1267 -3.1736 23 6 -2.6872 -9.7677 -1.2034 24 6 -1.9322 -8.7047 -0.7282 25 17 -2.3507 -7.9277 0.7668 26 6 1.1838 -4.7958 -0.2743 27 6 1.8255 -3.6479 0.0891 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1438 -1.4092 -1.5761 30 1 -1.2685 -3.4822 -2.2186 31 1 -0.0475 -7.0924 0.1278 32 1 1.0083 -7.2236 -1.2992 33 1 -0.9174 -10.3237 -4.0131 34 1 -3.5439 -10.1272 -0.6527 35 1 1.5418 -5.7495 0.0843 36 1 2.6905 -3.6920 0.7342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000126850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -135.078516 kcal Electronic energy + Delta-G solvation = -27492.753863 eV Core-core repulsion = 22746.195366 eV Total energy + Delta-G solvation = -4746.558496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 357.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.62780 -48.14737 -48.07616 -41.00578 -38.81693 -37.03627 -36.49822 -33.97593 -33.31415 -32.34313 -29.93780 -29.13221 -28.32853 -25.57808 -24.72942 -24.19326 -22.59069 -20.90615 -20.65589 -19.10268 -18.98220 -18.95136 -17.47186 -17.32324 -17.18208 -16.61249 -15.75281 -15.22370 -15.07984 -14.95883 -14.74117 -14.71283 -14.51064 -14.34387 -14.29146 -14.22499 -13.97209 -13.73977 -13.20464 -12.87106 -12.60963 -12.42790 -12.24886 -12.12083 -11.90524 -11.48085 -11.29803 -11.10997 -10.91813 -10.70982 -10.55503 -10.12720 -10.04568 -9.87861 -9.53322 -9.34383 -9.04722 -7.67415 -7.07992 -6.75188 -4.28525 0.01901 0.43461 1.55630 2.12632 2.75959 2.78081 2.92668 3.06865 3.09147 3.13307 3.20141 3.49537 3.61830 3.91025 3.93357 3.96246 4.08344 4.34636 4.55730 4.59170 4.66290 5.09278 5.13499 5.40793 5.53678 5.65288 5.72958 6.03139 6.18016 6.65906 6.94710 7.07579 7.14931 7.22483 7.41020 7.52055 7.74950 7.97459 8.16926 8.36907 8.60531 8.87186 8.94730 10.19328 Molecular weight = 357.05amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.001954 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.874001 B =14327.289452 C =14572.997919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.090 3.910 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.010 4.010 13 O -0.314 6.314 14 C 0.108 3.892 15 C 0.183 3.817 16 N -0.445 5.445 17 C 0.156 3.844 18 C -0.233 4.233 19 C 0.521 3.479 20 F -0.171 7.171 21 F -0.173 7.173 22 F -0.171 7.171 23 C -0.016 4.016 24 C -0.076 4.076 25 Cl -0.020 7.020 26 C -0.164 4.164 27 C -0.198 4.198 28 H 0.281 0.719 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -20.253 -3.013 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.154 4.154 11 C -0.134 4.134 12 C -0.053 4.053 13 O -0.230 6.230 14 C 0.031 3.969 15 C 0.045 3.955 16 N -0.154 5.154 17 C -0.002 4.002 18 C -0.237 4.237 19 C 0.466 3.534 20 F -0.153 7.153 21 F -0.154 7.154 22 F -0.153 7.153 23 C -0.043 4.043 24 C -0.106 4.106 25 Cl 0.009 6.991 26 C -0.182 4.182 27 C -0.218 4.218 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.197 0.803 34 H 0.177 0.823 35 H 0.112 0.888 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.009 -19.722 -3.444 20.903 hybrid contribution -0.471 0.180 0.722 0.881 sum -6.480 -19.542 -2.722 20.768 Atomic orbital electron populations 1.69827 1.07508 1.29296 1.35708 1.25887 0.94728 1.01250 0.92344 0.86377 0.80136 0.80323 0.79937 1.18855 1.20388 1.19079 1.19441 0.98114 0.91235 1.40455 0.90525 1.17597 0.91771 0.92122 0.89729 1.20975 0.98550 0.96258 0.99593 1.19802 1.00744 0.90060 1.02752 1.18515 0.97318 0.84076 1.05395 1.85858 1.54592 1.11581 1.70934 1.21216 0.95991 0.81353 0.98334 1.21320 0.90942 0.94417 0.88825 1.67907 1.28972 1.07609 1.10866 1.22906 0.88408 0.90319 0.98552 1.21044 1.01900 1.00943 0.99796 1.17898 0.77755 0.82014 0.75769 1.93195 1.84520 1.91225 1.46323 1.93244 1.96335 1.59122 1.66697 1.93252 1.36632 1.90684 1.94708 1.21245 0.97971 0.91868 0.93194 1.21817 0.97859 0.97628 0.93261 1.98440 1.92327 1.79413 1.28951 1.20387 0.97775 0.97855 1.02230 1.20557 1.03148 0.92462 1.05588 0.90826 0.85622 0.88491 0.90233 0.90179 0.80323 0.82332 0.88766 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 10.96 55.54 0.61 -19.77 16 2 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.46 29.60 -169.99 -5.03 13.43 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.08 9.04 -37.84 -0.34 -12.42 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 10 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 11 C -0.11 -2.72 9.92 -39.83 -0.40 -3.12 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.31 -6.23 10.11 -18.74 -0.19 -6.41 16 14 C 0.11 1.69 4.63 36.00 0.17 1.85 16 15 C 0.18 2.50 6.41 -82.55 -0.53 1.97 16 16 N -0.44 -5.78 10.27 -9.44 -0.10 -5.88 16 17 C 0.16 1.55 10.59 -17.54 -0.19 1.37 16 18 C -0.23 -2.13 5.38 -104.49 -0.56 -2.69 16 19 C 0.52 4.30 3.33 36.01 0.12 4.42 16 20 F -0.17 -1.38 16.00 2.25 0.04 -1.34 16 21 F -0.17 -1.45 17.25 2.25 0.04 -1.41 16 22 F -0.17 -1.53 17.24 2.25 0.04 -1.49 16 23 C -0.02 -0.16 9.58 -39.25 -0.38 -0.53 16 24 C -0.08 -0.90 6.34 -39.36 -0.25 -1.15 16 25 Cl -0.02 -0.25 27.33 -51.86 -1.42 -1.66 16 26 C -0.16 -3.57 8.96 -39.83 -0.36 -3.93 16 27 C -0.20 -4.74 9.74 -39.25 -0.38 -5.12 16 28 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 29 H 0.13 3.31 6.16 -52.48 -0.32 2.98 16 30 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.08 1.17 6.39 -51.93 -0.33 0.84 16 32 H 0.08 1.22 7.66 -51.93 -0.40 0.82 16 33 H 0.18 1.28 7.17 -52.49 -0.38 0.90 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -27.89 344.08 -7.78 -35.66 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.58 Total: 3.79 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -4.38 Total: -20.10 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.51 Total: -25.65 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.19 Total: -6.41 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.11 Total: -4.25 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.42 Total: -1.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.89 -7.78 -35.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000126850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.414 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds