Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48500 * 109.46735 * 239.99476 * 3 2 1 5 5 H 1.48497 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46774 * 119.99948 * 3 2 1 7 7 C 1.39890 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99483 * 197.93621 * 7 2 1 9 9 C 1.41210 * 120.00456 * 17.93848 * 7 2 1 10 10 C 1.40833 * 120.17816 * 24.54431 * 9 7 2 11 11 C 1.36439 * 119.81362 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18206 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81632 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99937 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47164 * 179.97438 * 14 13 12 16 16 N 1.31876 * 119.62730 * 89.99518 * 15 14 13 17 17 C 1.31853 * 121.74135 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.79023 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.41275 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47085 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47295 * 119.99936 * 19 18 17 22 22 F 1.39893 * 109.47082 * 240.00208 * 19 18 17 23 23 C 1.38607 * 119.17685 * 0.22980 * 18 17 16 24 24 C 1.38312 * 119.63047 * 270.02289 * 15 14 13 25 25 Cl 1.73603 * 120.42612 * 359.97438 * 24 15 14 26 26 C 1.39311 * 120.36666 * 0.25088 * 12 11 10 27 27 C 1.36438 * 120.18369 * 359.48557 * 26 12 11 28 28 H 0.96998 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.09460 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.90817 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.47202 * 59.99398 * 14 13 12 32 32 H 1.08995 * 109.46804 * 299.99297 * 14 13 12 33 33 H 1.07999 * 119.60282 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.79702 * 179.74637 * 23 18 17 35 35 H 1.08000 * 119.90754 * 179.72803 * 26 12 11 36 36 H 1.07999 * 120.09341 * 180.25674 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2886 9 6 1.3537 -2.4049 -0.3756 10 6 0.2247 -2.3585 -1.2161 11 6 -0.4023 -3.5160 -1.5744 12 6 0.0711 -4.7415 -1.1108 13 8 -0.5585 -5.8880 -1.4713 14 6 -0.0219 -7.1105 -0.9618 15 6 -0.8454 -8.2684 -1.4640 16 7 -0.5219 -8.8540 -2.6005 17 6 -1.2134 -9.8697 -3.0789 18 6 -2.3124 -10.3602 -2.3991 19 6 -3.0970 -11.5212 -2.9539 20 9 -2.5264 -11.9344 -4.1626 21 9 -3.0714 -12.5805 -2.0405 22 9 -4.4210 -11.1267 -3.1736 23 6 -2.6872 -9.7677 -1.2034 24 6 -1.9322 -8.7047 -0.7282 25 17 -2.3507 -7.9277 0.7668 26 6 1.1838 -4.7958 -0.2743 27 6 1.8255 -3.6479 0.0891 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1438 -1.4092 -1.5761 30 1 -1.2685 -3.4822 -2.2186 31 1 -0.0475 -7.0924 0.1278 32 1 1.0083 -7.2236 -1.2992 33 1 -0.9174 -10.3237 -4.0131 34 1 -3.5439 -10.1272 -0.6527 35 1 1.5418 -5.7495 0.0843 36 1 2.6905 -3.6920 0.7342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000126850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -148.169108 kcal Electronic energy + Delta-G solvation = -27493.321513 eV Core-core repulsion = 22746.195366 eV Total energy + Delta-G solvation = -4747.126147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 357.048 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.29768 -48.80582 -48.75236 -41.91670 -40.45563 -38.24348 -37.92093 -35.32362 -34.69336 -33.29938 -31.69959 -30.93082 -29.47924 -26.82985 -26.18984 -25.09989 -23.63346 -22.64613 -22.36428 -19.83475 -19.70264 -19.61898 -19.26910 -18.81680 -18.22346 -17.68794 -17.00743 -16.62334 -16.25772 -16.02952 -15.78287 -15.69459 -15.48698 -15.42679 -15.17177 -14.97142 -14.88870 -14.80898 -14.54344 -14.27595 -14.04036 -13.82494 -13.51777 -13.41061 -13.31851 -12.97767 -12.77270 -12.72205 -12.44091 -12.26773 -11.76457 -11.60486 -11.44256 -11.21687 -11.00578 -10.87519 -10.38848 -9.54804 -8.93486 -8.59087 -6.22031 -0.86168 -0.37999 0.66528 0.95984 1.04320 1.40223 1.40799 1.51361 1.55559 1.83367 2.23627 2.38200 2.59873 2.73588 2.80293 3.05479 3.18701 3.24279 3.35965 3.60180 3.71471 3.85137 4.11602 4.23007 4.26126 4.35705 4.38202 4.52121 4.85708 4.88298 5.07311 5.22048 5.28574 5.56665 5.64848 5.88685 6.06617 6.26804 6.34359 6.54817 6.76834 6.96124 7.07761 8.37366 Molecular weight = 357.05amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.001954 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.874001 B =14327.289452 C =14572.997919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.153 4.153 11 C -0.128 4.128 12 C 0.002 3.998 13 O -0.323 6.323 14 C 0.103 3.897 15 C 0.163 3.837 16 N -0.468 5.468 17 C 0.158 3.842 18 C -0.223 4.223 19 C 0.530 3.470 20 F -0.168 7.168 21 F -0.171 7.171 22 F -0.173 7.173 23 C -0.008 4.008 24 C -0.081 4.081 25 Cl -0.027 7.027 26 C -0.161 4.161 27 C -0.207 4.207 28 H 0.287 0.713 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.206 0.794 34 H 0.186 0.814 35 H 0.129 0.871 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -21.948 -3.216 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.055 3.945 10 C -0.173 4.173 11 C -0.147 4.147 12 C -0.041 4.041 13 O -0.238 6.238 14 C 0.027 3.973 15 C 0.025 3.975 16 N -0.177 5.177 17 C 0.000 4.000 18 C -0.227 4.227 19 C 0.475 3.525 20 F -0.149 7.149 21 F -0.152 7.152 22 F -0.154 7.154 23 C -0.034 4.034 24 C -0.110 4.110 25 Cl 0.002 6.998 26 C -0.180 4.180 27 C -0.226 4.226 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.222 0.778 34 H 0.203 0.797 35 H 0.147 0.853 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.242 -21.446 -3.645 22.631 hybrid contribution -0.489 0.432 0.726 0.976 sum -6.731 -21.014 -2.918 22.258 Atomic orbital electron populations 1.69886 1.08932 1.30516 1.36335 1.26728 0.95476 1.04449 0.91375 0.85272 0.78757 0.75793 0.80004 1.18590 1.19408 1.18375 1.19696 0.98407 0.92388 1.42302 0.90508 1.17947 0.92573 0.93333 0.90650 1.20893 0.99372 0.96367 1.00661 1.19953 1.01135 0.90428 1.03169 1.18555 0.96819 0.84729 1.04034 1.85838 1.54726 1.12146 1.71121 1.21402 0.96717 0.80214 0.98938 1.21015 0.91946 0.94527 0.89971 1.67847 1.30088 1.08824 1.10915 1.23325 0.88104 0.89361 0.99195 1.21143 1.01424 1.00766 0.99372 1.17659 0.77441 0.81595 0.75793 1.93209 1.84444 1.91135 1.46094 1.93256 1.96304 1.58960 1.66683 1.93257 1.36757 1.90714 1.94720 1.21539 0.98016 0.90640 0.93157 1.21806 0.97828 0.98358 0.93054 1.98438 1.92311 1.79705 1.29355 1.20686 0.97118 0.98736 1.01420 1.20800 1.03660 0.92490 1.05683 0.90215 0.87206 0.87487 0.89416 0.89799 0.77767 0.79722 0.85330 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.60 10.96 21.82 0.24 -43.36 16 2 C 0.03 1.71 5.13 85.23 0.44 2.14 16 3 Si 0.98 38.20 29.60 68.60 2.03 40.23 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.50 -26.75 9.04 23.40 0.21 -26.54 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.06 3.08 5.57 -21.28 -0.12 2.96 16 10 C -0.15 -8.16 8.64 22.48 0.19 -7.97 16 11 C -0.13 -6.19 9.92 22.11 0.22 -5.97 16 12 C 0.00 0.10 6.71 22.79 0.15 0.25 16 13 O -0.32 -12.54 10.11 -89.96 -0.91 -13.45 16 14 C 0.10 3.11 4.63 71.24 0.33 3.44 16 15 C 0.16 4.22 6.41 42.57 0.27 4.49 16 16 N -0.47 -11.39 10.27 -183.79 -1.89 -13.27 16 17 C 0.16 2.76 10.59 84.69 0.90 3.66 16 18 C -0.22 -3.48 5.38 -19.78 -0.11 -3.58 16 19 C 0.53 7.22 3.33 71.24 0.24 7.46 16 20 F -0.17 -2.21 16.00 44.97 0.72 -1.49 16 21 F -0.17 -2.38 17.25 44.97 0.78 -1.60 16 22 F -0.17 -2.61 17.24 44.97 0.78 -1.84 16 23 C -0.01 -0.12 9.58 22.49 0.22 0.09 16 24 C -0.08 -1.77 6.34 22.42 0.14 -1.63 16 25 Cl -0.03 -0.62 27.33 -2.72 -0.07 -0.69 16 26 C -0.16 -6.91 8.96 22.11 0.20 -6.72 16 27 C -0.21 -9.97 9.74 22.48 0.22 -9.75 16 28 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 29 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 30 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.09 2.47 6.39 -2.38 -0.02 2.45 16 32 H 0.08 2.44 7.66 -2.39 -0.02 2.42 16 33 H 0.21 2.33 7.17 -2.91 -0.02 2.31 16 34 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.13 4.54 6.27 -2.91 -0.02 4.52 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -60.97 344.08 6.34 -54.63 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.17 Total: 18.52 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.50 Total: -37.67 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -1.65 Total: -56.63 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.91 Total: -13.45 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 2.27 Total: -4.93 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -60.97 6.34 -54.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000126850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.541 kcal (2) G-P(sol) polarization free energy of solvation -60.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds