Wall clock time and date at job start Tue Mar 31 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48501 * 109.47297 * 239.99904 * 3 2 1 5 5 H 1.48500 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47163 * 119.99711 * 3 2 1 7 7 C 1.40156 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.41232 * 120.00282 * 359.97438 * 7 2 1 10 10 O 1.21851 * 120.00190 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00175 * 180.02562 * 9 7 2 12 12 C 1.37920 * 120.00019 * 180.02562 * 11 9 7 13 13 N 1.30350 * 125.43952 * 0.03817 * 12 11 9 14 14 C 1.31243 * 117.06456 * 179.97438 * 13 12 11 15 15 C 1.34215 * 115.74991 * 0.02562 * 14 13 12 16 16 C 1.50702 * 125.90162 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47499 * 89.99755 * 16 15 14 18 18 C 1.38250 * 119.99999 * 89.99512 * 17 16 15 19 19 C 1.38211 * 120.00202 * 179.97438 * 18 17 16 20 20 C 1.38266 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.38211 * 119.99686 * 0.02562 * 20 19 18 22 22 C 1.50692 * 119.99979 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.47384 * 0.02562 * 22 21 20 24 24 F 1.39907 * 109.47120 * 120.00357 * 22 21 20 25 25 F 1.39901 * 109.47420 * 240.00346 * 22 21 20 26 26 C 1.38214 * 119.99708 * 269.72692 * 17 16 15 27 27 S 1.76169 * 125.43779 * 180.02562 * 12 11 9 28 28 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00169 * 0.02562 * 11 9 7 30 30 H 1.07995 * 122.12536 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.46896 * 209.99782 * 16 15 14 32 32 H 1.09000 * 109.47084 * 329.99515 * 16 15 14 33 33 H 1.08005 * 120.00557 * 0.02562 * 18 17 16 34 34 H 1.08001 * 120.00733 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.00156 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.00412 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2754 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0070 -1.2138 -0.0005 8 1 3.0870 -1.2138 -0.0001 9 6 1.3008 -2.4369 -0.0005 10 8 0.0823 -2.4369 -0.0005 11 7 1.9746 -3.6041 -0.0005 12 6 1.2849 -4.7985 -0.0011 13 7 -0.0127 -4.9220 -0.0023 14 6 -0.4964 -6.1421 -0.0032 15 6 0.4124 -7.1297 -0.0021 16 6 0.1126 -8.6066 -0.0033 17 6 0.0149 -9.0982 -1.4245 18 6 1.1435 -9.5619 -2.0746 19 6 1.0539 -10.0134 -3.3778 20 6 -0.1644 -10.0008 -4.0316 21 6 -1.2924 -9.5363 -3.3820 22 6 -2.6201 -9.5220 -4.0946 23 9 -2.4590 -10.0228 -5.3910 24 9 -3.5326 -10.3205 -3.3967 25 9 -3.1016 -8.2100 -4.1576 26 6 -1.2040 -9.0908 -2.0760 27 16 2.0172 -6.4008 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 2.9446 -3.6042 -0.0002 30 1 -1.5583 -6.3388 -0.0038 31 1 0.9117 -9.1399 0.5116 32 1 -0.8327 -8.7858 0.5089 33 1 2.0951 -9.5722 -1.5639 34 1 1.9354 -10.3760 -3.8856 35 1 -0.2345 -10.3539 -5.0497 36 1 -2.0865 -8.7331 -1.5666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000137430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:18 Heat of formation + Delta-G solvation = -114.742760 kcal Electronic energy + Delta-G solvation = -27562.430641 eV Core-core repulsion = 22916.516337 eV Total energy + Delta-G solvation = -4645.914303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 356.055 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.31377 -47.85093 -47.75188 -39.83928 -39.10192 -37.37484 -34.35018 -33.34927 -32.44234 -32.01499 -29.64032 -27.35889 -26.26412 -25.67378 -23.72871 -22.58602 -21.73729 -21.04149 -18.79423 -18.62914 -18.57639 -18.38727 -18.12462 -16.61059 -16.50351 -15.86685 -15.51494 -15.28603 -14.89595 -14.68387 -14.52777 -14.37621 -14.22102 -14.16949 -14.06347 -13.99386 -13.92707 -13.54953 -13.22761 -12.82109 -12.67512 -12.52882 -12.39665 -12.29206 -11.57772 -11.44970 -11.40542 -11.14749 -10.78994 -10.74323 -10.43881 -9.70474 -9.44532 -9.17422 -8.96581 -8.86434 -8.71734 -7.69520 -7.20478 -6.44739 -5.01363 0.70691 0.98024 1.39421 1.58625 2.18731 2.48774 3.02712 3.08251 3.10493 3.24589 3.53777 3.59486 3.84433 3.88905 4.21578 4.26557 4.37962 4.55169 4.57642 4.76382 4.97254 5.02515 5.21710 5.24699 5.42967 5.47529 5.59513 5.64046 5.71837 5.90511 6.01840 6.07741 6.28893 6.51145 6.61663 7.13696 7.27747 7.74392 7.88091 8.52399 8.69382 9.11439 10.29404 10.48506 Molecular weight = 356.05amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002365 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.842347 B =11835.031100 C =12785.512876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.086 3.914 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.529 3.471 10 O -0.514 6.514 11 N -0.637 5.637 12 C 0.364 3.636 13 N -0.490 5.490 14 C 0.099 3.901 15 C -0.281 4.281 16 C 0.015 3.985 17 C -0.071 4.071 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.081 4.081 21 C -0.182 4.182 22 C 0.508 3.492 23 F -0.180 7.180 24 F -0.178 7.178 25 F -0.173 7.173 26 C -0.062 4.062 27 S -0.009 6.009 28 H 0.276 0.724 29 H 0.403 0.597 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -20.678 -4.751 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.335 3.665 10 O -0.391 6.391 11 N -0.286 5.286 12 C -0.007 4.007 13 N -0.212 5.212 14 C -0.055 4.055 15 C -0.404 4.404 16 C -0.025 4.025 17 C -0.072 4.072 18 C -0.098 4.098 19 C -0.136 4.136 20 C -0.099 4.099 21 C -0.183 4.183 22 C 0.454 3.546 23 F -0.161 7.161 24 F -0.160 7.160 25 F -0.155 7.155 26 C -0.080 4.080 27 S 0.239 5.761 28 H 0.087 0.913 29 H 0.238 0.762 30 H 0.179 0.821 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.024 -20.259 -4.764 20.910 hybrid contribution -0.082 0.660 -0.240 0.707 sum 1.943 -19.599 -5.003 20.321 Atomic orbital electron populations 1.69995 1.07320 1.28350 1.31215 1.25770 0.94725 1.00750 0.92539 0.86257 0.79791 0.80084 0.79735 1.18958 1.20231 1.18953 1.19848 0.94415 0.89502 1.53083 0.90956 1.17276 0.88252 0.81234 0.79705 1.90820 1.12733 1.83978 1.51550 1.44473 1.09641 1.02460 1.72063 1.25088 0.89801 0.90006 0.95769 1.66754 1.08266 1.22193 1.23964 1.21598 1.00562 0.85611 0.97736 1.24861 0.93219 0.98664 1.23651 1.18746 1.03227 0.88869 0.91637 1.19901 0.92609 0.97626 0.97033 1.21297 0.98334 0.95576 0.94621 1.21128 0.97323 1.00325 0.94872 1.20971 0.91634 0.97142 1.00118 1.19923 0.92457 1.09209 0.96700 1.18330 0.85569 0.73912 0.76801 1.93153 1.95624 1.87602 1.39724 1.93212 1.69679 1.74164 1.78911 1.93255 1.89575 1.36418 1.96212 1.20779 0.98672 0.96063 0.92475 1.84555 1.11046 1.03064 1.77454 0.91281 0.76181 0.82089 0.89925 0.89091 0.85149 0.84858 0.84679 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.22 11.72 55.56 0.65 -20.57 16 2 C 0.09 2.26 5.50 -17.34 -0.10 2.17 16 3 Si 0.92 18.86 29.56 -169.99 -5.02 13.84 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.53 -14.11 9.28 -37.73 -0.35 -14.46 16 8 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 9 C 0.53 14.63 7.51 -15.12 -0.11 14.51 16 10 O -0.51 -16.42 13.50 5.05 0.07 -16.35 16 11 N -0.64 -14.20 5.35 -14.63 -0.08 -14.28 16 12 C 0.36 7.73 8.26 -87.81 -0.72 7.01 16 13 N -0.49 -11.33 8.65 -13.94 -0.12 -11.45 16 14 C 0.10 1.78 11.17 -19.22 -0.21 1.56 16 15 C -0.28 -4.14 5.84 -35.73 -0.21 -4.35 16 16 C 0.02 0.16 5.88 -29.04 -0.17 -0.01 16 17 C -0.07 -0.75 5.12 -104.63 -0.54 -1.29 16 18 C -0.08 -0.76 9.70 -39.59 -0.38 -1.14 16 19 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 20 C -0.08 -0.77 9.43 -39.58 -0.37 -1.14 16 21 C -0.18 -1.98 5.37 -104.63 -0.56 -2.55 16 22 C 0.51 5.72 3.32 36.00 0.12 5.84 16 23 F -0.18 -1.95 15.97 2.25 0.04 -1.91 16 24 F -0.18 -2.00 17.23 2.25 0.04 -1.96 16 25 F -0.17 -2.25 17.24 2.25 0.04 -2.21 16 26 C -0.06 -0.68 9.25 -39.58 -0.37 -1.04 16 27 S -0.01 -0.14 23.44 -107.50 -2.52 -2.66 16 28 H 0.28 7.13 8.29 -40.82 -0.34 6.79 16 29 H 0.40 7.32 8.77 -40.82 -0.36 6.96 16 30 H 0.16 2.51 8.06 -52.49 -0.42 2.08 16 31 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 1.06 7.16 -52.49 -0.38 0.68 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -34.31 350.14 -8.82 -43.13 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.81 Total: 5.46 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -4.38 Total: 3.68 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.45 Total: -46.30 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.35 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.52 Total: -2.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.31 -8.82 -43.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.611 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds