Wall clock time and date at job start Tue Mar 31 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48501 * 109.47297 * 239.99904 * 3 2 1 5 5 H 1.48500 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47163 * 119.99711 * 3 2 1 7 7 C 1.40156 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.41232 * 120.00282 * 359.97438 * 7 2 1 10 10 O 1.21851 * 120.00190 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00175 * 180.02562 * 9 7 2 12 12 C 1.37920 * 120.00019 * 180.02562 * 11 9 7 13 13 N 1.30350 * 125.43952 * 0.03817 * 12 11 9 14 14 C 1.31243 * 117.06456 * 179.97438 * 13 12 11 15 15 C 1.34215 * 115.74991 * 0.02562 * 14 13 12 16 16 C 1.50702 * 125.90162 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47499 * 89.99755 * 16 15 14 18 18 C 1.38250 * 119.99999 * 89.99512 * 17 16 15 19 19 C 1.38211 * 120.00202 * 179.97438 * 18 17 16 20 20 C 1.38266 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.38211 * 119.99686 * 0.02562 * 20 19 18 22 22 C 1.50692 * 119.99979 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.47384 * 0.02562 * 22 21 20 24 24 F 1.39907 * 109.47120 * 120.00357 * 22 21 20 25 25 F 1.39901 * 109.47420 * 240.00346 * 22 21 20 26 26 C 1.38214 * 119.99708 * 269.72692 * 17 16 15 27 27 S 1.76169 * 125.43779 * 180.02562 * 12 11 9 28 28 H 0.97002 * 119.99651 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00169 * 0.02562 * 11 9 7 30 30 H 1.07995 * 122.12536 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.46896 * 209.99782 * 16 15 14 32 32 H 1.09000 * 109.47084 * 329.99515 * 16 15 14 33 33 H 1.08005 * 120.00557 * 0.02562 * 18 17 16 34 34 H 1.08001 * 120.00733 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.00156 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.00412 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2754 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0070 -1.2138 -0.0005 8 1 3.0870 -1.2138 -0.0001 9 6 1.3008 -2.4369 -0.0005 10 8 0.0823 -2.4369 -0.0005 11 7 1.9746 -3.6041 -0.0005 12 6 1.2849 -4.7985 -0.0011 13 7 -0.0127 -4.9220 -0.0023 14 6 -0.4964 -6.1421 -0.0032 15 6 0.4124 -7.1297 -0.0021 16 6 0.1126 -8.6066 -0.0033 17 6 0.0149 -9.0982 -1.4245 18 6 1.1435 -9.5619 -2.0746 19 6 1.0539 -10.0134 -3.3778 20 6 -0.1644 -10.0008 -4.0316 21 6 -1.2924 -9.5363 -3.3820 22 6 -2.6201 -9.5220 -4.0946 23 9 -2.4590 -10.0228 -5.3910 24 9 -3.5326 -10.3205 -3.3967 25 9 -3.1016 -8.2100 -4.1576 26 6 -1.2040 -9.0908 -2.0760 27 16 2.0172 -6.4008 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 2.9446 -3.6042 -0.0002 30 1 -1.5583 -6.3388 -0.0038 31 1 0.9117 -9.1399 0.5116 32 1 -0.8327 -8.7858 0.5089 33 1 2.0951 -9.5722 -1.5639 34 1 1.9354 -10.3760 -3.8856 35 1 -0.2345 -10.3539 -5.0497 36 1 -2.0865 -8.7331 -1.5666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000137430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:17 Heat of formation + Delta-G solvation = -135.549644 kcal Electronic energy + Delta-G solvation = -27563.332895 eV Core-core repulsion = 22916.516337 eV Total energy + Delta-G solvation = -4646.816558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 356.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22646 -48.75018 -48.69515 -40.90112 -40.42680 -39.12006 -35.77093 -34.77775 -34.37554 -32.78329 -30.78875 -29.17950 -27.17928 -26.90582 -25.19287 -23.36358 -23.10812 -22.23119 -20.40232 -20.00519 -19.54826 -19.40945 -19.12096 -18.22130 -17.37150 -17.29296 -17.22653 -16.22264 -16.08651 -15.84698 -15.62677 -15.54200 -15.41524 -15.38539 -15.14066 -14.93450 -14.86037 -14.62879 -14.52403 -14.28930 -14.01608 -13.60735 -13.44919 -13.41775 -13.17691 -12.77576 -12.73549 -12.39167 -12.23525 -12.07030 -11.92774 -11.34775 -10.90071 -10.57691 -10.20285 -10.08400 -9.86814 -9.64443 -8.73908 -8.39711 -7.06618 -0.14215 -0.01904 0.12683 0.30891 0.83561 1.40707 1.43106 1.56823 1.61719 2.06976 2.20203 2.46661 2.49934 2.68362 2.70197 2.97650 3.37015 3.63427 3.76536 3.86196 3.94887 4.05304 4.14751 4.22957 4.28059 4.47684 4.65042 4.81467 4.89898 4.95809 5.16915 5.18776 5.21598 5.31815 5.49035 5.69761 5.80988 5.88325 6.03155 6.69125 6.92700 7.43831 8.35970 8.54050 Molecular weight = 356.05amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002365 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.842347 B =11835.031100 C =12785.512876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.029 3.971 3 Si 1.006 2.994 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.558 4.558 8 H 0.099 0.901 9 C 0.518 3.482 10 O -0.574 6.574 11 N -0.641 5.641 12 C 0.305 3.695 13 N -0.543 5.543 14 C 0.054 3.946 15 C -0.242 4.242 16 C 0.014 3.986 17 C -0.084 4.084 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.083 4.083 21 C -0.197 4.197 22 C 0.508 3.492 23 F -0.177 7.177 24 F -0.180 7.180 25 F -0.188 7.188 26 C -0.076 4.076 27 S 0.091 5.909 28 H 0.280 0.720 29 H 0.420 0.580 30 H 0.172 0.828 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -22.646 -4.956 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.175 1.175 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.593 4.593 8 H 0.117 0.883 9 C 0.325 3.675 10 O -0.456 6.456 11 N -0.292 5.292 12 C -0.064 4.064 13 N -0.266 5.266 14 C -0.098 4.098 15 C -0.365 4.365 16 C -0.025 4.025 17 C -0.085 4.085 18 C -0.100 4.100 19 C -0.133 4.133 20 C -0.101 4.101 21 C -0.199 4.199 22 C 0.454 3.546 23 F -0.159 7.159 24 F -0.161 7.161 25 F -0.169 7.169 26 C -0.094 4.094 27 S 0.340 5.660 28 H 0.090 0.910 29 H 0.257 0.743 30 H 0.189 0.811 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.168 0.832 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.015 -22.315 -4.967 23.405 hybrid contribution -1.006 0.906 -0.225 1.372 sum 4.009 -21.409 -5.192 22.392 Atomic orbital electron populations 1.70181 1.09907 1.29760 1.32978 1.27109 0.95495 1.05355 0.90968 0.84938 0.78140 0.73848 0.80626 1.17470 1.19966 1.17363 1.20446 0.95860 0.89934 1.53096 0.88301 1.17600 0.87803 0.83130 0.78962 1.90763 1.15073 1.85737 1.54042 1.43668 1.10105 1.02237 1.73150 1.25151 0.90473 0.91945 0.98843 1.66637 1.10573 1.25587 1.23783 1.21765 1.01826 0.85084 1.01106 1.25636 0.92788 1.00515 1.17572 1.18983 1.05383 0.85623 0.92539 1.19886 0.92934 0.98788 0.96860 1.21630 0.98686 0.94659 0.95004 1.21500 0.97890 0.99264 0.94662 1.21274 0.91558 0.96433 1.00859 1.20005 0.92553 1.10374 0.96937 1.18447 0.85899 0.73293 0.76968 1.93150 1.95613 1.87488 1.39617 1.93204 1.69873 1.74092 1.78944 1.93227 1.89835 1.37534 1.96299 1.20918 0.99237 0.96452 0.92793 1.84092 1.09313 0.97544 1.75044 0.90963 0.74273 0.81072 0.87076 0.87216 0.82997 0.81838 0.83232 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.96 11.72 21.85 0.26 -47.70 16 2 C 0.03 1.57 5.50 85.34 0.47 2.04 16 3 Si 1.01 38.78 29.56 68.60 2.03 40.81 16 4 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.56 -30.27 9.28 23.47 0.22 -30.05 16 8 H 0.10 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.52 30.01 7.51 84.98 0.64 30.64 16 10 O -0.57 -39.04 13.50 -4.83 -0.07 -39.11 16 11 N -0.64 -29.41 5.35 -318.35 -1.70 -31.12 16 12 C 0.30 13.19 8.26 179.36 1.48 14.67 16 13 N -0.54 -26.18 8.65 -198.01 -1.71 -27.89 16 14 C 0.05 1.96 11.17 83.86 0.94 2.89 16 15 C -0.24 -6.65 5.84 24.77 0.14 -6.50 16 16 C 0.01 0.25 5.88 29.10 0.17 0.43 16 17 C -0.08 -1.54 5.12 -19.87 -0.10 -1.64 16 18 C -0.08 -1.23 9.70 22.27 0.22 -1.01 16 19 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 20 C -0.08 -1.38 9.43 22.27 0.21 -1.17 16 21 C -0.20 -4.07 5.37 -19.87 -0.11 -4.18 16 22 C 0.51 11.26 3.32 71.23 0.24 11.50 16 23 F -0.18 -3.71 15.97 44.97 0.72 -3.00 16 24 F -0.18 -3.99 17.23 44.97 0.77 -3.21 16 25 F -0.19 -4.95 17.24 44.97 0.78 -4.17 16 26 C -0.08 -1.56 9.25 22.27 0.21 -1.36 16 27 S 0.09 2.60 23.44 -56.49 -1.32 1.27 16 28 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 29 H 0.42 15.38 8.77 -92.71 -0.81 14.56 16 30 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 31 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.11 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.15 1.97 7.16 -2.91 -0.02 1.95 16 36 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -81.08 350.14 5.05 -76.03 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.36 Total: 23.18 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 4.94 Total: 14.91 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -3.16 Total: -106.71 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.07 Total: -39.11 kcal Atomic # 9 Polarization: -12.65 SS G_CDS: 2.27 Total: -10.38 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.27 kcal Total: -81.08 5.05 -76.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.523 kcal (2) G-P(sol) polarization free energy of solvation -81.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds