Wall clock time and date at job start Tue Mar 31 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00106 * 2 1 4 4 C 1.38756 * 120.05311 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94283 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05568 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.10886 * 359.95596 * 6 5 4 8 8 C 1.50699 * 119.96745 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47052 * 156.35901 * 8 7 6 10 10 C 1.50694 * 109.47397 * 276.36172 * 8 7 6 11 11 H 1.08005 * 120.00219 * 84.81425 * 10 8 7 12 12 C 1.37876 * 120.00024 * 264.81424 * 10 8 7 13 13 N 1.31516 * 120.00202 * 172.99239 * 12 10 8 14 14 Si 1.86800 * 120.00085 * 352.99161 * 12 10 8 15 15 H 1.48502 * 109.46903 * 85.26541 * 14 12 10 16 16 H 1.48499 * 109.47410 * 205.26360 * 14 12 10 17 17 H 1.48496 * 109.47323 * 325.26674 * 14 12 10 18 18 O 1.45205 * 109.47264 * 36.36411 * 8 7 6 19 19 C 1.34709 * 117.00016 * 149.99962 * 18 8 7 20 20 O 1.21467 * 120.00097 * 359.97438 * 19 18 8 21 21 C 1.47726 * 120.00151 * 180.02562 * 19 18 8 22 22 C 1.39629 * 120.15391 * 179.97438 * 21 19 18 23 23 C 1.37938 * 119.84763 * 180.02562 * 22 21 19 24 24 C 1.38364 * 120.15287 * 359.97438 * 23 22 21 25 25 N 1.48017 * 119.85135 * 179.97438 * 24 23 22 26 26 O 1.21807 * 119.99692 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00389 * 179.72360 * 25 24 23 28 28 C 1.38368 * 120.30257 * 0.25911 * 24 23 22 29 29 C 1.37940 * 120.15094 * 359.48724 * 28 24 23 30 30 C 1.38160 * 120.05665 * 0.27578 * 7 6 5 31 31 H 1.09002 * 109.47083 * 60.00458 * 1 2 3 32 32 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47409 * 300.00501 * 1 2 3 34 34 H 1.07999 * 120.03127 * 359.97438 * 4 3 2 35 35 H 1.07996 * 119.96815 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.93964 * 179.97438 * 6 5 4 37 37 H 0.96996 * 120.00505 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.07176 * 359.97438 * 22 21 19 39 39 H 1.08001 * 119.92357 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.92757 * 179.74490 * 28 24 23 41 41 H 1.07993 * 120.08270 * 180.23327 * 29 28 24 42 42 H 1.08008 * 120.02309 * 179.74235 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0007 8 6 5.5607 2.5982 -0.0007 9 1 5.9742 1.6781 0.4121 10 6 6.0539 2.7814 -1.4128 11 1 6.1011 3.7703 -1.8444 12 6 6.4450 1.6865 -2.1539 13 7 6.7438 1.8268 -3.4270 14 14 6.5506 0.0037 -1.3498 15 1 5.2135 -0.6419 -1.3757 16 1 7.5219 -0.8395 -2.0918 17 1 7.0001 0.1548 0.0574 18 8 5.9847 3.7257 0.8102 19 6 7.1760 3.6196 1.4300 20 8 7.8422 2.6127 1.2971 21 6 7.6717 4.7274 2.2722 22 6 8.9059 4.6206 2.9165 23 6 9.3624 5.6587 3.7018 24 6 8.6007 6.8041 3.8514 25 7 9.0968 7.9137 4.6961 26 8 10.1732 7.8170 5.2581 27 8 8.4310 8.9252 4.8256 28 6 7.3747 6.9146 3.2196 29 6 6.9084 5.8864 2.4271 30 6 3.4310 1.2849 -0.0050 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 0.2128 2.3204 -0.0014 35 1 1.3339 4.5114 -0.0019 36 1 3.7921 4.6381 -0.0024 37 1 7.0186 1.0565 -3.9485 38 1 9.5011 3.7270 2.8009 39 1 10.3166 5.5772 4.2011 40 1 6.7833 7.8097 3.3439 41 1 5.9530 5.9754 1.9316 42 1 4.0207 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000185741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:27 Heat of formation + Delta-G solvation = -64.689392 kcal Electronic energy + Delta-G solvation = -30521.561138 eV Core-core repulsion = 26015.035613 eV Total energy + Delta-G solvation = -4506.525525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37382 -40.39167 -39.77175 -38.89340 -37.31069 -36.76074 -35.78277 -33.24659 -32.41837 -31.72799 -31.31330 -30.04328 -27.82424 -27.22317 -26.88064 -24.08163 -23.33520 -22.94623 -22.13583 -21.13006 -20.11160 -19.58527 -18.85089 -17.95375 -17.79559 -17.72383 -17.18954 -16.44642 -15.86307 -15.55268 -15.51556 -15.33588 -15.24925 -15.17381 -14.34107 -14.23409 -14.12542 -13.60556 -13.34425 -13.21175 -13.05861 -12.85005 -12.51270 -12.11716 -11.95642 -11.85671 -11.71570 -11.45963 -11.39727 -11.32528 -11.29259 -11.03474 -10.83167 -10.65489 -10.25471 -10.06498 -9.85833 -9.84986 -9.70580 -9.48901 -8.89180 -8.28651 -7.78422 -6.44696 -4.50883 -0.57954 0.68056 0.93168 1.16085 1.75887 1.90337 2.50284 2.94859 3.13153 3.21210 3.27156 3.38682 3.51684 4.08734 4.14374 4.18346 4.22017 4.50030 4.59500 4.85196 4.89444 5.01372 5.03551 5.17752 5.24625 5.26473 5.34746 5.45670 5.46121 5.50254 5.66722 5.80737 5.83182 5.90239 5.93068 6.18041 6.20835 6.23621 6.41237 6.66149 6.84475 6.94431 7.10887 7.17674 7.27249 7.43364 7.71755 7.99971 8.21991 8.61216 9.13184 10.65414 Molecular weight = 357.11amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.002798 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.186912 B =10006.160308 C =11582.275898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.125 3.875 4 C -0.226 4.226 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.005 4.005 8 C 0.216 3.784 9 H 0.067 0.933 10 C -0.529 4.529 11 H 0.088 0.912 12 C 0.094 3.906 13 N -0.869 5.869 14 Si 0.853 3.147 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.247 1.247 18 O -0.348 6.348 19 C 0.499 3.501 20 O -0.487 6.487 21 C -0.053 4.053 22 C -0.062 4.062 23 C -0.065 4.065 24 C -0.028 4.028 25 N 0.027 4.973 26 O -0.160 6.160 27 O -0.157 6.157 28 C -0.066 4.066 29 C -0.064 4.064 30 C -0.156 4.156 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.273 0.727 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 4.374 11.667 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.080 3.920 4 C -0.245 4.245 5 C -0.103 4.103 6 C -0.154 4.154 7 C -0.005 4.005 8 C 0.163 3.837 9 H 0.084 0.916 10 C -0.565 4.565 11 H 0.106 0.894 12 C -0.114 4.114 13 N -0.503 5.503 14 Si 0.678 3.322 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.171 1.171 18 O -0.264 6.264 19 C 0.341 3.659 20 O -0.375 6.375 21 C -0.055 4.055 22 C -0.081 4.081 23 C -0.084 4.084 24 C -0.110 4.110 25 N 0.547 4.453 26 O -0.375 6.375 27 O -0.374 6.374 28 C -0.085 4.085 29 C -0.082 4.082 30 C -0.175 4.175 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.183 0.817 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.631 3.216 10.989 12.760 hybrid contribution -0.033 -0.584 0.145 0.603 sum -5.664 2.632 11.134 12.766 Atomic orbital electron populations 1.22966 0.79118 1.03318 1.01097 1.86057 1.20795 1.27463 1.89180 1.18820 0.91940 0.83853 0.97382 1.21008 0.99189 0.92498 1.11770 1.20846 0.94641 0.96486 0.98336 1.20821 0.92945 0.98486 1.03102 1.19882 0.95524 0.92086 0.93053 1.19899 0.87529 0.85170 0.91057 0.91570 1.20962 1.44275 0.96880 0.94375 0.89388 1.24902 0.92848 0.99053 0.94556 1.69851 1.42242 1.31790 1.06459 0.87201 0.79309 0.84156 0.81503 1.18730 1.20510 1.17094 1.86424 1.33869 1.47984 1.58136 1.20578 0.81328 0.85813 0.78138 1.90846 1.56558 1.30616 1.59522 1.19970 0.95024 0.94045 0.96443 1.21377 0.94424 0.99004 0.93255 1.20981 1.00337 0.90157 0.96954 1.21378 0.98437 0.89705 1.01528 1.43655 1.00229 1.01800 0.99605 1.94544 1.08841 1.87092 1.47071 1.94543 1.56728 1.19118 1.67012 1.21063 0.92988 1.00645 0.93851 1.21639 1.00782 0.90496 0.95332 1.20138 0.91289 0.98174 1.07896 0.92859 0.88751 0.92983 0.86239 0.86338 0.85680 0.91708 0.82009 0.82219 0.82243 0.81693 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.25 10.50 -19.43 -0.20 -5.46 16 3 C 0.12 2.23 6.69 -39.22 -0.26 1.97 16 4 C -0.23 -3.47 9.04 -39.43 -0.36 -3.83 16 5 C -0.08 -1.30 10.04 -39.60 -0.40 -1.70 16 6 C -0.14 -2.42 9.35 -39.56 -0.37 -2.79 16 7 C 0.00 -0.09 4.98 -104.65 -0.52 -0.62 16 8 C 0.22 4.89 1.90 -29.04 -0.06 4.83 16 9 H 0.07 1.58 3.89 -51.93 -0.20 1.38 16 10 C -0.53 -14.01 9.19 -34.44 -0.32 -14.32 16 11 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 12 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 13 N -0.87 -25.06 13.96 55.43 0.77 -24.29 16 14 Si 0.85 20.52 25.60 -169.99 -4.35 16.17 16 15 H -0.26 -6.07 6.41 56.52 0.36 -5.71 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.25 -5.88 6.35 56.52 0.36 -5.52 16 18 O -0.35 -6.81 8.31 -40.52 -0.34 -7.15 16 19 C 0.50 9.16 7.87 34.61 0.27 9.43 16 20 O -0.49 -10.45 15.61 -19.24 -0.30 -10.75 16 21 C -0.05 -0.72 5.87 -104.98 -0.62 -1.33 16 22 C -0.06 -0.71 9.60 -39.17 -0.38 -1.08 16 23 C -0.07 -0.66 9.54 -39.64 -0.38 -1.04 16 24 C -0.03 -0.31 6.86 -79.85 -0.55 -0.86 16 25 N 0.03 0.34 4.45 34.01 0.15 0.50 16 26 O -0.16 -2.09 18.43 -29.46 -0.54 -2.64 16 27 O -0.16 -2.06 18.43 -29.46 -0.54 -2.60 16 28 C -0.07 -0.66 9.54 -39.64 -0.38 -1.04 16 29 C -0.06 -0.70 9.62 -39.17 -0.38 -1.08 16 30 C -0.16 -3.19 9.29 -39.44 -0.37 -3.56 16 31 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 34 H 0.12 1.46 6.30 -52.49 -0.33 1.12 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 2.08 7.66 -52.49 -0.40 1.68 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.16 1.73 7.65 -52.49 -0.40 1.33 16 39 H 0.16 1.29 7.60 -52.49 -0.40 0.90 16 40 H 0.16 1.26 7.60 -52.49 -0.40 0.87 16 41 H 0.17 1.61 7.61 -52.49 -0.40 1.21 16 42 H 0.12 2.59 5.73 -52.48 -0.30 2.29 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -31.81 371.73 -8.02 -39.83 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.11 Total: 3.99 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -4.15 Total: -13.20 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.93 Total: -23.79 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.93 Total: -28.59 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.35 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.81 -8.02 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000185741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.864 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds