Wall clock time and date at job start Tue Mar 31 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00106 * 2 1 4 4 C 1.38756 * 120.05311 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94283 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05568 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.10886 * 359.95596 * 6 5 4 8 8 C 1.50699 * 119.96745 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47052 * 156.35901 * 8 7 6 10 10 C 1.50694 * 109.47397 * 276.36172 * 8 7 6 11 11 H 1.08005 * 120.00219 * 84.81425 * 10 8 7 12 12 C 1.37876 * 120.00024 * 264.81424 * 10 8 7 13 13 N 1.31516 * 120.00202 * 172.99239 * 12 10 8 14 14 Si 1.86800 * 120.00085 * 352.99161 * 12 10 8 15 15 H 1.48502 * 109.46903 * 85.26541 * 14 12 10 16 16 H 1.48499 * 109.47410 * 205.26360 * 14 12 10 17 17 H 1.48496 * 109.47323 * 325.26674 * 14 12 10 18 18 O 1.45205 * 109.47264 * 36.36411 * 8 7 6 19 19 C 1.34709 * 117.00016 * 149.99962 * 18 8 7 20 20 O 1.21467 * 120.00097 * 359.97438 * 19 18 8 21 21 C 1.47726 * 120.00151 * 180.02562 * 19 18 8 22 22 C 1.39629 * 120.15391 * 179.97438 * 21 19 18 23 23 C 1.37938 * 119.84763 * 180.02562 * 22 21 19 24 24 C 1.38364 * 120.15287 * 359.97438 * 23 22 21 25 25 N 1.48017 * 119.85135 * 179.97438 * 24 23 22 26 26 O 1.21807 * 119.99692 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00389 * 179.72360 * 25 24 23 28 28 C 1.38368 * 120.30257 * 0.25911 * 24 23 22 29 29 C 1.37940 * 120.15094 * 359.48724 * 28 24 23 30 30 C 1.38160 * 120.05665 * 0.27578 * 7 6 5 31 31 H 1.09002 * 109.47083 * 60.00458 * 1 2 3 32 32 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47409 * 300.00501 * 1 2 3 34 34 H 1.07999 * 120.03127 * 359.97438 * 4 3 2 35 35 H 1.07996 * 119.96815 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.93964 * 179.97438 * 6 5 4 37 37 H 0.96996 * 120.00505 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.07176 * 359.97438 * 22 21 19 39 39 H 1.08001 * 119.92357 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.92757 * 179.74490 * 28 24 23 41 41 H 1.07993 * 120.08270 * 180.23327 * 29 28 24 42 42 H 1.08008 * 120.02309 * 179.74235 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0007 8 6 5.5607 2.5982 -0.0007 9 1 5.9742 1.6781 0.4121 10 6 6.0539 2.7814 -1.4128 11 1 6.1011 3.7703 -1.8444 12 6 6.4450 1.6865 -2.1539 13 7 6.7438 1.8268 -3.4270 14 14 6.5506 0.0037 -1.3498 15 1 5.2135 -0.6419 -1.3757 16 1 7.5219 -0.8395 -2.0918 17 1 7.0001 0.1548 0.0574 18 8 5.9847 3.7257 0.8102 19 6 7.1760 3.6196 1.4300 20 8 7.8422 2.6127 1.2971 21 6 7.6717 4.7274 2.2722 22 6 8.9059 4.6206 2.9165 23 6 9.3624 5.6587 3.7018 24 6 8.6007 6.8041 3.8514 25 7 9.0968 7.9137 4.6961 26 8 10.1732 7.8170 5.2581 27 8 8.4310 8.9252 4.8256 28 6 7.3747 6.9146 3.2196 29 6 6.9084 5.8864 2.4271 30 6 3.4310 1.2849 -0.0050 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 0.2128 2.3204 -0.0014 35 1 1.3339 4.5114 -0.0019 36 1 3.7921 4.6381 -0.0024 37 1 7.0186 1.0565 -3.9485 38 1 9.5011 3.7270 2.8009 39 1 10.3166 5.5772 4.2011 40 1 6.7833 7.8097 3.3439 41 1 5.9530 5.9754 1.9316 42 1 4.0207 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000185741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:26 Heat of formation + Delta-G solvation = -82.003608 kcal Electronic energy + Delta-G solvation = -30522.311939 eV Core-core repulsion = 26015.035613 eV Total energy + Delta-G solvation = -4507.276325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.34098 -41.76006 -41.00820 -40.06720 -38.64828 -37.74818 -37.31500 -35.14628 -33.57767 -32.85138 -32.57150 -31.35408 -29.36432 -28.30776 -28.00632 -25.56504 -24.32107 -24.18251 -23.49562 -22.36358 -21.57923 -20.51339 -19.84224 -19.62663 -19.19865 -18.78497 -18.68405 -17.87178 -17.14404 -16.98992 -16.74679 -16.61222 -16.43060 -16.10031 -15.98568 -15.48584 -14.98363 -14.94898 -14.81444 -14.45391 -14.37738 -14.26941 -13.98274 -13.58398 -13.28121 -12.99036 -12.92387 -12.81539 -12.61775 -12.50097 -12.39417 -12.33063 -12.15897 -12.09130 -11.97175 -11.70906 -11.53232 -11.25698 -10.95573 -10.85970 -10.55140 -9.74230 -9.10257 -8.55257 -6.63164 -1.58053 -0.17446 -0.10477 0.21217 0.38318 0.54990 1.18201 1.21700 1.28341 1.31038 1.57342 2.13216 2.26576 2.40012 2.75642 2.95940 3.21739 3.35166 3.40194 3.64797 3.71816 3.90522 4.01409 4.17533 4.20201 4.30539 4.39122 4.42591 4.50252 4.53232 4.54993 4.58387 4.60803 4.73114 4.82260 4.92255 4.99905 5.01361 5.16822 5.27801 5.33256 5.43269 5.55382 5.76157 5.87776 6.00069 6.41863 6.41924 6.51070 6.65876 7.05318 8.59235 Molecular weight = 357.11amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.002798 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.186912 B =10006.160308 C =11582.275898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.072 4.072 6 C -0.146 4.146 7 C -0.031 4.031 8 C 0.224 3.776 9 H 0.049 0.951 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.049 3.951 13 N -0.916 5.916 14 Si 0.901 3.099 15 H -0.251 1.251 16 H -0.276 1.276 17 H -0.250 1.250 18 O -0.342 6.342 19 C 0.495 3.505 20 O -0.527 6.527 21 C -0.072 4.072 22 C -0.058 4.058 23 C -0.054 4.054 24 C -0.029 4.029 25 N 0.027 4.973 26 O -0.170 6.170 27 O -0.161 6.161 28 C -0.053 4.053 29 C -0.054 4.054 30 C -0.187 4.187 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.274 0.726 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.178 0.822 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 5.637 13.500 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.075 3.925 4 C -0.230 4.230 5 C -0.089 4.089 6 C -0.164 4.164 7 C -0.032 4.032 8 C 0.171 3.829 9 H 0.067 0.933 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.154 4.154 13 N -0.553 5.553 14 Si 0.725 3.275 15 H -0.176 1.176 16 H -0.201 1.201 17 H -0.175 1.175 18 O -0.258 6.258 19 C 0.339 3.661 20 O -0.417 6.417 21 C -0.074 4.074 22 C -0.076 4.076 23 C -0.072 4.072 24 C -0.112 4.112 25 N 0.546 4.454 26 O -0.384 6.384 27 O -0.378 6.378 28 C -0.072 4.072 29 C -0.072 4.072 30 C -0.206 4.206 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.183 0.817 39 H 0.200 0.800 40 H 0.203 0.797 41 H 0.195 0.805 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.213 4.490 12.852 15.899 hybrid contribution 0.639 -0.866 -0.306 1.119 sum -7.573 3.624 12.546 15.096 Atomic orbital electron populations 1.23374 0.76117 1.05537 1.02573 1.86033 1.23895 1.26985 1.88919 1.18914 0.91273 0.85462 0.96898 1.21477 1.01121 0.91333 1.09101 1.21311 0.93589 0.98313 0.95720 1.21011 0.94414 0.97699 1.03298 1.19732 0.94166 0.93522 0.95772 1.19568 0.89254 0.85101 0.88994 0.93318 1.21085 1.44096 0.95238 0.96228 0.92724 1.25511 0.92935 1.02075 0.94875 1.69949 1.44914 1.32706 1.07732 0.86443 0.79755 0.80927 0.80360 1.17554 1.20111 1.17457 1.86393 1.34785 1.46573 1.58013 1.21454 0.80252 0.86662 0.77692 1.90819 1.57262 1.32555 1.61090 1.19745 0.96608 0.93547 0.97491 1.21403 0.93659 0.99577 0.92995 1.21120 1.00914 0.89141 0.96064 1.21560 0.98925 0.89442 1.01280 1.43804 1.00108 1.01959 0.99571 1.94548 1.09124 1.87241 1.47524 1.94540 1.56666 1.19505 1.67105 1.21258 0.92586 1.00880 0.92446 1.21717 1.00845 0.89580 0.95065 1.20150 0.92961 0.97336 1.10168 0.91667 0.86474 0.90978 0.82140 0.81941 0.85004 0.91623 0.81739 0.80031 0.79722 0.80464 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.65 10.50 -92.46 -0.97 -11.62 16 3 C 0.12 4.10 6.69 22.51 0.15 4.25 16 4 C -0.21 -5.71 9.04 22.37 0.20 -5.51 16 5 C -0.07 -1.93 10.04 22.26 0.22 -1.71 16 6 C -0.15 -5.05 9.35 22.28 0.21 -4.84 16 7 C -0.03 -1.31 4.98 -19.88 -0.10 -1.41 16 8 C 0.22 10.59 1.90 29.10 0.06 10.65 16 9 H 0.05 2.46 3.89 -2.39 -0.01 2.45 16 10 C -0.53 -29.57 9.19 25.60 0.24 -29.33 16 11 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 12 C 0.05 2.80 5.47 84.65 0.46 3.26 16 13 N -0.92 -55.42 13.96 21.45 0.30 -55.12 16 14 Si 0.90 44.51 25.60 68.60 1.76 46.27 16 15 H -0.25 -11.80 6.41 99.48 0.64 -11.16 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.25 -12.34 6.35 99.48 0.63 -11.71 16 18 O -0.34 -13.81 8.31 -56.18 -0.47 -14.28 16 19 C 0.49 18.75 7.87 70.33 0.55 19.30 16 20 O -0.53 -23.67 15.61 19.94 0.31 -23.36 16 21 C -0.07 -1.92 5.87 -20.10 -0.12 -2.04 16 22 C -0.06 -1.27 9.60 22.53 0.22 -1.05 16 23 C -0.05 -0.98 9.54 22.23 0.21 -0.76 16 24 C -0.03 -0.58 6.86 36.44 0.25 -0.33 16 25 N 0.03 0.62 4.45 -46.32 -0.21 0.42 16 26 O -0.17 -4.14 18.43 18.88 0.35 -3.79 16 27 O -0.16 -3.85 18.43 18.89 0.35 -3.50 16 28 C -0.05 -0.91 9.54 22.23 0.21 -0.70 16 29 C -0.05 -1.08 9.62 22.54 0.22 -0.86 16 30 C -0.19 -7.77 9.29 22.36 0.21 -7.56 16 31 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 34 H 0.16 2.98 6.30 -2.91 -0.02 2.96 16 35 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.13 4.26 7.66 -2.91 -0.02 4.24 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.17 3.52 7.65 -2.91 -0.02 3.49 16 39 H 0.18 2.50 7.60 -2.91 -0.02 2.48 16 40 H 0.19 2.26 7.60 -2.91 -0.02 2.24 16 41 H 0.18 3.12 7.61 -2.91 -0.02 3.10 16 42 H 0.10 4.50 5.73 -2.91 -0.02 4.48 16 Total: -1.00 -74.26 371.73 6.67 -67.59 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.95 Total: 14.62 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.30 Total: -17.22 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.09 Total: -54.70 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.43 Total: -56.55 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.76 Total: 46.27 kcal Total: -74.26 6.67 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000185741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.415 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds