Wall clock time and date at job start Tue Mar 31 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99949 * 2 1 4 4 C 1.38749 * 120.05526 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93927 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05947 * 359.74889 * 5 4 3 7 7 C 1.38243 * 120.10933 * 0.50799 * 6 5 4 8 8 C 1.50693 * 119.97456 * 179.76694 * 7 6 5 9 9 H 1.09001 * 109.47117 * 204.72672 * 8 7 6 10 10 C 1.50696 * 109.47309 * 84.72630 * 8 7 6 11 11 H 1.07997 * 120.00428 * 119.99919 * 10 8 7 12 12 C 1.37881 * 120.00086 * 300.00073 * 10 8 7 13 13 N 1.31516 * 119.99657 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00377 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46942 * 90.00069 * 14 12 10 16 16 H 1.48500 * 109.47117 * 210.00100 * 14 12 10 17 17 H 1.48492 * 109.47442 * 330.00325 * 14 12 10 18 18 O 1.45199 * 109.47359 * 324.72421 * 8 7 6 19 19 C 1.34705 * 117.00434 * 210.00224 * 18 8 7 20 20 O 1.21470 * 119.99965 * 359.97438 * 19 18 8 21 21 C 1.47726 * 120.00320 * 179.97438 * 19 18 8 22 22 C 1.39631 * 120.15220 * 179.97438 * 21 19 18 23 23 C 1.37942 * 119.84621 * 180.02562 * 22 21 19 24 24 C 1.38367 * 120.15190 * 0.02562 * 23 22 21 25 25 N 1.48020 * 119.84785 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72403 * 25 24 23 28 28 C 1.38365 * 120.30270 * 0.24919 * 24 23 22 29 29 C 1.37945 * 120.15113 * 359.49762 * 28 24 23 30 30 C 1.38175 * 120.05351 * 359.49320 * 7 6 5 31 31 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47069 * 300.00029 * 1 2 3 33 33 H 1.09001 * 109.47274 * 59.99693 * 1 2 3 34 34 H 1.07990 * 120.03070 * 0.02562 * 4 3 2 35 35 H 1.08005 * 119.97080 * 180.02562 * 5 4 3 36 36 H 1.07997 * 119.94683 * 180.27908 * 6 5 4 37 37 H 0.97001 * 120.00111 * 180.02562 * 13 12 10 38 38 H 1.08000 * 120.07510 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.92143 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.92169 * 179.74829 * 28 24 23 41 41 H 1.07997 * 120.07773 * 180.23196 * 29 28 24 42 42 H 1.08000 * 120.02626 * 180.27391 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0063 7 6 4.0561 2.5170 0.0004 8 6 5.5609 2.5980 0.0009 9 1 5.9738 1.6876 -0.4336 10 6 6.0555 2.7482 1.4164 11 1 6.7171 2.0065 1.8389 12 6 5.6633 3.8326 2.1723 13 7 4.8573 4.7356 1.6580 14 14 6.2758 4.0185 3.9272 15 1 7.5445 4.7904 3.9295 16 1 5.2572 4.7380 4.7334 17 1 6.5128 2.6751 4.5137 18 8 5.9842 3.7440 -0.7839 19 6 7.1748 3.6523 -1.4072 20 8 7.8415 2.6428 -1.2978 21 6 7.6698 4.7794 -2.2238 22 6 8.9038 4.6879 -2.8708 23 6 9.3602 5.7444 -3.6314 24 6 8.5984 6.8930 -3.7534 25 7 9.0949 8.0229 -4.5707 26 8 10.1719 7.9403 -5.1336 27 8 8.4244 9.0333 -4.6841 28 6 7.3774 6.9926 -3.1103 29 6 6.9065 5.9417 -2.3509 30 6 3.4311 1.2847 -0.0001 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.2129 2.3204 0.0014 35 1 1.3341 4.5114 0.0019 36 1 3.7924 4.6379 0.0113 37 1 4.5817 5.4987 2.1896 38 1 9.4999 3.7924 -2.7754 39 1 10.3146 5.6751 -4.1320 40 1 6.7897 7.8936 -3.2065 41 1 5.9516 6.0192 -1.8525 42 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000185746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:32 Heat of formation + Delta-G solvation = -61.237448 kcal Electronic energy + Delta-G solvation = -30779.397213 eV Core-core repulsion = 26273.021375 eV Total energy + Delta-G solvation = -4506.375837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26694 -40.12441 -39.44352 -38.63749 -37.00883 -36.66098 -35.42822 -33.18949 -32.24718 -31.55328 -30.87359 -29.46958 -27.56133 -27.03101 -26.60445 -23.98332 -23.16631 -22.91341 -21.70964 -20.82383 -20.15722 -19.45065 -18.75165 -17.74809 -17.62407 -17.31319 -16.97751 -15.89430 -15.56106 -15.32793 -15.25371 -15.09481 -15.03437 -14.80839 -14.57293 -14.01478 -13.86817 -13.33169 -13.27597 -12.98978 -12.74549 -12.55638 -12.00051 -11.94732 -11.72131 -11.62612 -11.52060 -11.30712 -11.28473 -11.23322 -11.16286 -10.62006 -10.53962 -10.47694 -10.40570 -9.96777 -9.69449 -9.62278 -9.54554 -9.16333 -8.96400 -7.96025 -7.36596 -6.27563 -4.62490 -0.43543 0.84089 1.07260 1.28073 2.13916 2.39821 2.69993 3.07528 3.16893 3.20947 3.29532 3.61217 3.77686 4.10888 4.24626 4.32783 4.66103 4.71095 4.77293 4.86653 5.14662 5.17723 5.24792 5.33270 5.48901 5.49414 5.59800 5.63129 5.63695 5.75533 6.00495 6.09511 6.14021 6.21992 6.34723 6.38739 6.49054 6.67211 6.81061 7.03617 7.33352 7.36107 7.54117 7.56391 7.68606 7.71977 7.84179 8.12290 8.36264 8.64216 9.13246 10.54304 Molecular weight = 357.11amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.002838 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.202974 B = 9865.153400 C =10981.193669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.095 3.905 4 C -0.222 4.222 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.012 4.012 8 C 0.246 3.754 9 H 0.054 0.946 10 C -0.530 4.530 11 H 0.073 0.927 12 C 0.081 3.919 13 N -0.845 5.845 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.270 1.270 18 O -0.326 6.326 19 C 0.496 3.504 20 O -0.510 6.510 21 C -0.052 4.052 22 C -0.066 4.066 23 C -0.069 4.069 24 C -0.031 4.031 25 N 0.029 4.971 26 O -0.163 6.163 27 O -0.159 6.159 28 C -0.067 4.067 29 C -0.060 4.060 30 C -0.149 4.149 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.268 0.732 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 1.257 -7.010 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.051 3.949 4 C -0.241 4.241 5 C -0.133 4.133 6 C -0.098 4.098 7 C -0.013 4.013 8 C 0.195 3.805 9 H 0.072 0.928 10 C -0.566 4.566 11 H 0.091 0.909 12 C -0.126 4.126 13 N -0.480 5.480 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.194 1.194 18 O -0.241 6.241 19 C 0.339 3.661 20 O -0.401 6.401 21 C -0.054 4.054 22 C -0.084 4.084 23 C -0.088 4.088 24 C -0.113 4.113 25 N 0.548 4.452 26 O -0.378 6.378 27 O -0.376 6.376 28 C -0.086 4.086 29 C -0.078 4.078 30 C -0.168 4.168 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.184 0.816 37 H 0.078 0.922 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.186 0.814 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.256 0.375 -6.485 6.876 hybrid contribution 0.045 0.502 1.076 1.188 sum -2.211 0.877 -5.409 5.909 Atomic orbital electron populations 1.22870 0.79743 1.02759 1.00835 1.85999 1.20260 1.27896 1.89899 1.18705 0.92024 0.83459 1.00693 1.20960 0.98558 0.92930 1.11615 1.20955 0.95598 0.95757 1.01030 1.21799 0.91677 1.01219 0.95075 1.19545 0.95018 0.91820 0.94908 1.19327 0.87667 0.83408 0.90135 0.92820 1.21355 1.29765 1.09332 0.96116 0.90898 1.25097 0.93295 0.95348 0.98863 1.69801 1.30468 1.10978 1.36737 0.86448 0.78780 0.78809 0.83335 1.20220 1.20665 1.19416 1.86714 1.32297 1.47661 1.57399 1.20648 0.82123 0.85559 0.77797 1.90762 1.57389 1.31339 1.60656 1.20112 0.94741 0.94297 0.96230 1.21357 0.94656 0.98800 0.93635 1.20946 1.00221 0.90262 0.97324 1.21362 0.98606 0.88991 1.02375 1.43672 1.00157 1.01907 0.99480 1.94529 1.09006 1.87742 1.46555 1.94539 1.56465 1.19832 1.66748 1.21081 0.92967 1.00717 0.93872 1.21730 1.00968 0.90193 0.94939 1.20020 0.90853 0.98002 1.07955 0.89162 0.93278 0.93305 0.87254 0.87357 0.81630 0.92160 0.82246 0.82459 0.82402 0.81361 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.40 16 2 O -0.33 -5.60 10.50 -19.44 -0.20 -5.80 16 3 C 0.09 1.81 6.69 -39.22 -0.26 1.55 16 4 C -0.22 -3.93 9.04 -39.44 -0.36 -4.28 16 5 C -0.11 -2.13 10.04 -39.60 -0.40 -2.53 16 6 C -0.08 -1.65 7.46 -39.56 -0.29 -1.94 16 7 C -0.01 -0.27 4.81 -104.65 -0.50 -0.77 16 8 C 0.25 5.67 2.42 -29.04 -0.07 5.60 16 9 H 0.05 1.25 7.07 -51.93 -0.37 0.89 16 10 C -0.53 -13.23 8.91 -34.44 -0.31 -13.54 16 11 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 12 C 0.08 1.97 5.24 -17.82 -0.09 1.87 16 13 N -0.85 -19.91 8.50 55.43 0.47 -19.44 16 14 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 O -0.33 -6.93 7.69 -40.50 -0.31 -7.24 16 19 C 0.50 9.61 7.87 34.61 0.27 9.88 16 20 O -0.51 -10.94 15.61 -19.24 -0.30 -11.24 16 21 C -0.05 -0.78 5.87 -104.98 -0.62 -1.40 16 22 C -0.07 -0.82 9.60 -39.17 -0.38 -1.20 16 23 C -0.07 -0.77 9.54 -39.64 -0.38 -1.15 16 24 C -0.03 -0.38 6.86 -79.85 -0.55 -0.93 16 25 N 0.03 0.39 4.45 34.01 0.15 0.54 16 26 O -0.16 -2.29 18.43 -29.46 -0.54 -2.83 16 27 O -0.16 -2.27 18.43 -29.46 -0.54 -2.81 16 28 C -0.07 -0.79 9.54 -39.64 -0.38 -1.16 16 29 C -0.06 -0.78 9.62 -39.17 -0.38 -1.16 16 30 C -0.15 -3.11 9.62 -39.43 -0.38 -3.49 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.56 7.66 -51.92 -0.40 0.16 16 33 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 34 H 0.11 1.62 6.30 -52.49 -0.33 1.29 16 35 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.17 3.62 5.49 -52.49 -0.29 3.33 16 37 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 38 H 0.16 1.83 7.65 -52.49 -0.40 1.43 16 39 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 40 H 0.16 1.55 7.60 -52.49 -0.40 1.15 16 41 H 0.17 2.18 7.61 -52.49 -0.40 1.79 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -27.79 372.41 -8.95 -36.74 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.19 Total: 5.32 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -4.07 Total: -13.25 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.62 Total: -18.89 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.90 Total: -29.93 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.79 -8.95 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000185746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.496 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds