Wall clock time and date at job start Tue Mar 31 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99949 * 2 1 4 4 C 1.38749 * 120.05526 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93927 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05947 * 359.74889 * 5 4 3 7 7 C 1.38243 * 120.10933 * 0.50799 * 6 5 4 8 8 C 1.50693 * 119.97456 * 179.76694 * 7 6 5 9 9 H 1.09001 * 109.47117 * 204.72672 * 8 7 6 10 10 C 1.50696 * 109.47309 * 84.72630 * 8 7 6 11 11 H 1.07997 * 120.00428 * 119.99919 * 10 8 7 12 12 C 1.37881 * 120.00086 * 300.00073 * 10 8 7 13 13 N 1.31516 * 119.99657 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00377 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46942 * 90.00069 * 14 12 10 16 16 H 1.48500 * 109.47117 * 210.00100 * 14 12 10 17 17 H 1.48492 * 109.47442 * 330.00325 * 14 12 10 18 18 O 1.45199 * 109.47359 * 324.72421 * 8 7 6 19 19 C 1.34705 * 117.00434 * 210.00224 * 18 8 7 20 20 O 1.21470 * 119.99965 * 359.97438 * 19 18 8 21 21 C 1.47726 * 120.00320 * 179.97438 * 19 18 8 22 22 C 1.39631 * 120.15220 * 179.97438 * 21 19 18 23 23 C 1.37942 * 119.84621 * 180.02562 * 22 21 19 24 24 C 1.38367 * 120.15190 * 0.02562 * 23 22 21 25 25 N 1.48020 * 119.84785 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72403 * 25 24 23 28 28 C 1.38365 * 120.30270 * 0.24919 * 24 23 22 29 29 C 1.37945 * 120.15113 * 359.49762 * 28 24 23 30 30 C 1.38175 * 120.05351 * 359.49320 * 7 6 5 31 31 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47069 * 300.00029 * 1 2 3 33 33 H 1.09001 * 109.47274 * 59.99693 * 1 2 3 34 34 H 1.07990 * 120.03070 * 0.02562 * 4 3 2 35 35 H 1.08005 * 119.97080 * 180.02562 * 5 4 3 36 36 H 1.07997 * 119.94683 * 180.27908 * 6 5 4 37 37 H 0.97001 * 120.00111 * 180.02562 * 13 12 10 38 38 H 1.08000 * 120.07510 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.92143 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.92169 * 179.74829 * 28 24 23 41 41 H 1.07997 * 120.07773 * 180.23196 * 29 28 24 42 42 H 1.08000 * 120.02626 * 180.27391 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0063 7 6 4.0561 2.5170 0.0004 8 6 5.5609 2.5980 0.0009 9 1 5.9738 1.6876 -0.4336 10 6 6.0555 2.7482 1.4164 11 1 6.7171 2.0065 1.8389 12 6 5.6633 3.8326 2.1723 13 7 4.8573 4.7356 1.6580 14 14 6.2758 4.0185 3.9272 15 1 7.5445 4.7904 3.9295 16 1 5.2572 4.7380 4.7334 17 1 6.5128 2.6751 4.5137 18 8 5.9842 3.7440 -0.7839 19 6 7.1748 3.6523 -1.4072 20 8 7.8415 2.6428 -1.2978 21 6 7.6698 4.7794 -2.2238 22 6 8.9038 4.6879 -2.8708 23 6 9.3602 5.7444 -3.6314 24 6 8.5984 6.8930 -3.7534 25 7 9.0949 8.0229 -4.5707 26 8 10.1719 7.9403 -5.1336 27 8 8.4244 9.0333 -4.6841 28 6 7.3774 6.9926 -3.1103 29 6 6.9065 5.9417 -2.3509 30 6 3.4311 1.2847 -0.0001 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.2129 2.3204 0.0014 35 1 1.3341 4.5114 0.0019 36 1 3.7924 4.6379 0.0113 37 1 4.5817 5.4987 2.1896 38 1 9.4999 3.7924 -2.7754 39 1 10.3146 5.6751 -4.1320 40 1 6.7897 7.8936 -3.2065 41 1 5.9516 6.0192 -1.8525 42 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000185746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:31 Heat of formation + Delta-G solvation = -72.651177 kcal Electronic energy + Delta-G solvation = -30779.892149 eV Core-core repulsion = 26273.021375 eV Total energy + Delta-G solvation = -4506.870774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33243 -41.52757 -40.81493 -39.93401 -38.47247 -37.74186 -37.02563 -34.93570 -33.42765 -32.60137 -32.40024 -30.91690 -29.11048 -28.22453 -27.84036 -25.50664 -24.30213 -24.15466 -23.21784 -22.17011 -21.68043 -20.48763 -19.83489 -19.25152 -18.71836 -18.68308 -18.63320 -17.38577 -17.02300 -16.78319 -16.55099 -16.49838 -16.34361 -16.03544 -15.99594 -15.28068 -14.93382 -14.75759 -14.66170 -14.22492 -14.13587 -14.02447 -13.49585 -13.38817 -13.04171 -12.90323 -12.86096 -12.80152 -12.58528 -12.37820 -12.32716 -12.25055 -12.15070 -11.95741 -11.80795 -11.54233 -11.31861 -10.90479 -10.80164 -10.75568 -10.51776 -9.53079 -8.88884 -8.05147 -6.50744 -1.53507 -0.13887 -0.05684 0.22691 0.60946 0.87608 1.35106 1.39411 1.41763 1.47653 1.85688 2.31578 2.36258 2.54767 3.02878 3.15916 3.26071 3.38749 3.57669 3.70985 3.84742 4.08614 4.19404 4.23298 4.40177 4.44545 4.45341 4.55649 4.59080 4.62968 4.65480 4.72772 4.81999 4.92931 4.96454 5.02982 5.17393 5.27634 5.31040 5.52483 5.55218 5.74251 5.86932 5.99817 6.17965 6.26707 6.43817 6.52601 6.70220 6.96405 7.26826 8.71814 Molecular weight = 357.11amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.002838 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.202974 B = 9865.153400 C =10981.193669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.343 6.343 3 C 0.097 3.903 4 C -0.214 4.214 5 C -0.111 4.111 6 C -0.094 4.094 7 C -0.031 4.031 8 C 0.250 3.750 9 H 0.032 0.968 10 C -0.563 4.563 11 H 0.051 0.949 12 C 0.054 3.946 13 N -0.845 5.845 14 Si 0.946 3.054 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.278 1.278 18 O -0.330 6.330 19 C 0.489 3.511 20 O -0.540 6.540 21 C -0.072 4.072 22 C -0.058 4.058 23 C -0.053 4.053 24 C -0.032 4.032 25 N 0.029 4.971 26 O -0.164 6.164 27 O -0.169 6.169 28 C -0.056 4.056 29 C -0.056 4.056 30 C -0.175 4.175 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.272 0.728 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 2.558 -7.532 8.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.258 6.258 3 C 0.052 3.948 4 C -0.232 4.232 5 C -0.129 4.129 6 C -0.113 4.113 7 C -0.032 4.032 8 C 0.198 3.802 9 H 0.050 0.950 10 C -0.599 4.599 11 H 0.069 0.931 12 C -0.153 4.153 13 N -0.479 5.479 14 Si 0.772 3.228 15 H -0.201 1.201 16 H -0.196 1.196 17 H -0.203 1.203 18 O -0.245 6.245 19 C 0.335 3.665 20 O -0.434 6.434 21 C -0.073 4.073 22 C -0.077 4.077 23 C -0.072 4.072 24 C -0.114 4.114 25 N 0.547 4.453 26 O -0.380 6.380 27 O -0.384 6.384 28 C -0.074 4.074 29 C -0.074 4.074 30 C -0.194 4.194 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.082 0.918 38 H 0.185 0.815 39 H 0.202 0.798 40 H 0.197 0.803 41 H 0.184 0.816 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.787 1.698 -7.024 8.158 hybrid contribution 0.458 0.048 1.139 1.228 sum -3.329 1.746 -5.885 6.983 Atomic orbital electron populations 1.23271 0.76814 1.05201 1.01985 1.85988 1.23253 1.26985 1.89539 1.18776 0.91527 0.84863 0.99585 1.21316 1.00349 0.91828 1.09736 1.21269 0.94705 0.97446 0.99465 1.21701 0.92944 1.00147 0.96480 1.19528 0.94330 0.92845 0.96458 1.19103 0.88766 0.82950 0.89392 0.95006 1.21378 1.30968 1.09920 0.97626 0.93062 1.25535 0.93529 0.95066 1.01188 1.69904 1.30024 1.10755 1.37219 0.85745 0.78531 0.78195 0.80364 1.20116 1.19620 1.20312 1.86669 1.33367 1.46784 1.57638 1.21400 0.81154 0.86512 0.77466 1.90732 1.57851 1.32915 1.61878 1.19906 0.96413 0.93561 0.97432 1.21416 0.93632 0.99528 0.93098 1.21142 1.00817 0.89027 0.96200 1.21517 0.98911 0.88894 1.02119 1.43787 1.00070 1.02026 0.99446 1.94528 1.09089 1.87773 1.46616 1.94543 1.56531 1.20220 1.67086 1.21194 0.92819 1.00751 0.92668 1.21652 1.00730 0.89904 0.95140 1.20100 0.92293 0.97439 1.09522 0.86342 0.92293 0.91776 0.83542 0.84374 0.82822 0.91814 0.81472 0.79814 0.80301 0.81581 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -11.28 10.50 -92.46 -0.97 -12.25 16 3 C 0.10 3.63 6.69 22.51 0.15 3.78 16 4 C -0.21 -7.04 9.04 22.36 0.20 -6.84 16 5 C -0.11 -3.90 10.04 22.26 0.22 -3.67 16 6 C -0.09 -3.95 7.46 22.28 0.17 -3.78 16 7 C -0.03 -1.41 4.81 -19.88 -0.10 -1.51 16 8 C 0.25 12.27 2.42 29.10 0.07 12.34 16 9 H 0.03 1.63 7.07 -2.39 -0.02 1.62 16 10 C -0.56 -29.70 8.91 25.60 0.23 -29.48 16 11 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 12 C 0.05 2.67 5.24 84.66 0.44 3.11 16 13 N -0.85 -40.25 8.50 21.45 0.18 -40.06 16 14 Si 0.95 40.36 29.54 68.60 2.03 42.39 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 O -0.33 -14.78 7.69 -56.14 -0.43 -15.22 16 19 C 0.49 19.92 7.87 70.33 0.55 20.48 16 20 O -0.54 -24.61 15.61 19.93 0.31 -24.29 16 21 C -0.07 -2.16 5.87 -20.10 -0.12 -2.28 16 22 C -0.06 -1.40 9.60 22.54 0.22 -1.18 16 23 C -0.05 -1.08 9.54 22.23 0.21 -0.86 16 24 C -0.03 -0.72 6.86 36.44 0.25 -0.47 16 25 N 0.03 0.72 4.45 -46.31 -0.21 0.51 16 26 O -0.16 -4.23 18.43 18.88 0.35 -3.88 16 27 O -0.17 -4.48 18.43 18.89 0.35 -4.13 16 28 C -0.06 -1.20 9.54 22.23 0.21 -0.98 16 29 C -0.06 -1.42 9.62 22.54 0.22 -1.21 16 30 C -0.17 -7.54 9.62 22.37 0.22 -7.33 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.13 7.66 -2.38 -0.02 1.12 16 33 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 34 H 0.15 3.69 6.30 -2.92 -0.02 3.67 16 35 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.15 6.81 5.49 -2.91 -0.02 6.79 16 37 H 0.27 12.19 8.31 -92.71 -0.77 11.42 16 38 H 0.17 3.76 7.65 -2.91 -0.02 3.74 16 39 H 0.18 2.76 7.60 -2.91 -0.02 2.74 16 40 H 0.18 3.09 7.60 -2.91 -0.02 3.07 16 41 H 0.17 4.33 7.61 -2.91 -0.02 4.31 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -62.11 372.41 6.95 -55.16 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.08 Total: 20.09 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.26 Total: -18.31 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.02 Total: -39.55 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.39 Total: -59.78 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -62.11 6.95 -55.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000185746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.487 kcal (2) G-P(sol) polarization free energy of solvation -62.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds