Wall clock time and date at job start Tue Mar 31 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47251 * 85.15125 * 3 2 1 5 5 C 1.36881 * 120.00001 * 270.31900 * 4 3 2 6 6 H 1.07993 * 120.00139 * 193.98049 * 5 4 3 7 7 C 1.39048 * 119.99993 * 13.97807 * 5 4 3 8 8 N 1.31369 * 119.99580 * 10.30904 * 7 5 4 9 9 Si 1.86792 * 120.00102 * 190.31470 * 7 5 4 10 10 H 1.48503 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47464 * 119.99830 * 9 7 5 12 12 H 1.48500 * 109.47225 * 240.00172 * 9 7 5 13 13 C 1.34770 * 120.00206 * 90.31926 * 4 3 2 14 14 O 1.21592 * 120.00270 * 4.42146 * 13 4 3 15 15 C 1.47696 * 120.00222 * 184.42481 * 13 4 3 16 16 C 1.39683 * 120.15071 * 53.02172 * 15 13 4 17 17 C 1.37900 * 119.84838 * 180.02562 * 16 15 13 18 18 C 1.38425 * 120.17015 * 0.02562 * 17 16 15 19 19 C 1.38316 * 120.31562 * 359.97438 * 18 17 16 20 20 C 1.38040 * 120.14846 * 359.97438 * 19 18 17 21 21 I 2.09502 * 120.09050 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47609 * 325.14802 * 3 2 1 23 23 H 1.09001 * 109.47256 * 205.15326 * 3 2 1 24 24 H 0.97004 * 119.99658 * 179.97438 * 8 7 5 25 25 H 1.07998 * 120.07742 * 0.30028 * 16 15 13 26 26 H 1.07998 * 119.91503 * 180.02562 * 17 16 15 27 27 H 1.07999 * 119.83695 * 179.97438 * 18 17 16 28 28 H 1.08004 * 119.92652 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1159 -1.3762 5 6 3.3189 -1.3517 -1.9212 6 1 3.8839 -1.4443 -2.8368 7 6 2.8174 -2.4878 -1.2957 8 7 1.9655 -2.3690 -0.3028 9 14 3.3553 -4.1829 -1.8672 10 1 4.3131 -4.0447 -2.9936 11 1 4.0115 -4.8990 -0.7439 12 1 2.1685 -4.9526 -2.3190 13 6 3.3267 0.9936 -2.1058 14 8 3.2065 2.0915 -1.5972 15 6 3.7249 0.8761 -3.5232 16 6 2.9556 0.1162 -4.4074 17 6 3.3335 0.0102 -5.7294 18 6 4.4726 0.6541 -6.1810 19 6 5.2395 1.4083 -5.3115 20 6 4.8728 1.5242 -3.9857 21 53 6.0352 2.6677 -2.6704 22 1 2.9718 -0.8425 0.5873 23 1 2.9709 0.9310 0.4368 24 1 1.6154 -3.1616 0.1333 25 1 2.0644 -0.3836 -4.0576 26 1 2.7393 -0.5767 -6.4140 27 1 4.7638 0.5671 -7.2174 28 1 6.1268 1.9084 -5.6707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000288492.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:04 Heat of formation + Delta-G solvation = 53.626254 kcal Electronic energy + Delta-G solvation = -17203.007971 eV Core-core repulsion = 14272.354468 eV Total energy + Delta-G solvation = -2930.653503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 355.976 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.72582 -37.87244 -35.64895 -34.44399 -31.99700 -31.74839 -30.93131 -27.87436 -27.25019 -25.03965 -22.84094 -21.66357 -19.61168 -18.30525 -16.89362 -16.16502 -15.66748 -14.96119 -14.75106 -14.54074 -13.98685 -13.28728 -12.98364 -12.89139 -12.69443 -12.49922 -11.91547 -11.53738 -11.39070 -11.26960 -11.21076 -10.70498 -10.57874 -10.51176 -10.30868 -9.93762 -9.57143 -9.29036 -8.77828 -8.49999 -8.37777 -8.21315 -6.62162 -4.19055 1.31672 1.54607 1.59214 2.97474 3.10108 3.13628 3.45535 3.70988 3.99691 4.04119 4.24108 4.71190 4.80656 5.07330 5.24983 5.36824 5.52771 5.71284 5.73691 5.97284 6.19915 6.39041 6.51619 6.63977 6.70559 6.76122 7.09019 7.17781 7.33568 8.08930 8.78298 8.93128 9.11369 9.51339 10.38158 Molecular weight = 355.98amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.005937 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.765842 B = 4714.742362 C = 5445.959664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.265 3.735 3 C 0.229 3.771 4 N -0.427 5.427 5 C -0.331 4.331 6 H 0.107 0.893 7 C 0.038 3.962 8 N -0.874 5.874 9 Si 0.928 3.072 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.489 3.511 14 O -0.569 6.569 15 C -0.050 4.050 16 C -0.070 4.070 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.099 4.099 20 C -0.073 4.073 21 I -0.034 7.034 22 H 0.135 0.865 23 H 0.088 0.912 24 H 0.276 0.724 25 H 0.138 0.862 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.599 4.737 -7.749 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.053 4.053 3 C 0.103 3.897 4 N -0.145 5.145 5 C -0.459 4.459 6 H 0.125 0.875 7 C -0.167 4.167 8 N -0.512 5.512 9 Si 0.755 3.245 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.277 3.723 14 O -0.453 6.453 15 C -0.056 4.056 16 C -0.091 4.091 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.214 4.214 21 I 0.116 6.884 22 H 0.153 0.847 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.574 5.922 -6.398 12.949 hybrid contribution -0.169 -1.934 -1.122 2.243 sum 9.405 3.987 -7.520 12.685 Atomic orbital electron populations 1.80854 1.13727 1.13979 1.08596 1.29112 0.95179 0.88722 0.92260 1.18720 0.81519 1.03564 0.85880 1.43483 1.55262 1.05549 1.10212 1.19865 1.33816 0.81566 1.10616 0.87509 1.25290 0.94786 1.00413 0.96182 1.69759 1.27489 1.30906 1.23084 0.85810 0.78644 0.81097 0.78992 1.19040 1.20185 1.20595 1.17948 0.84189 0.84686 0.85471 1.90728 1.57373 1.25840 1.71404 1.19903 0.94134 0.96033 0.95513 1.21442 0.99711 0.95423 0.92474 1.21183 0.97014 0.99458 0.95676 1.21165 0.95420 0.97729 0.99351 1.20888 0.99969 0.99452 0.91631 1.24307 0.98233 1.02571 0.96276 1.96633 1.63082 1.67335 1.61392 0.84745 0.89387 0.91231 0.84378 0.85587 0.85721 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.44 18.54 42.15 0.78 -11.66 15 2 C 0.26 6.33 13.45 -20.76 -0.28 6.05 15 3 C 0.23 4.99 5.21 -6.83 -0.04 4.96 15 4 N -0.43 -9.64 2.58 -119.07 -0.31 -9.95 15 5 C -0.33 -7.46 8.25 -15.00 -0.12 -7.59 15 6 H 0.11 2.35 5.97 -52.49 -0.31 2.04 15 7 C 0.04 0.85 5.20 -17.45 -0.09 0.76 15 8 N -0.87 -20.67 8.51 55.50 0.47 -20.19 15 9 Si 0.93 18.06 29.57 -169.99 -5.03 13.03 15 10 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 13 C 0.49 10.87 6.41 -12.40 -0.08 10.79 15 14 O -0.57 -13.54 15.03 5.28 0.08 -13.46 15 15 C -0.05 -0.98 4.72 -104.95 -0.50 -1.48 15 16 C -0.07 -1.24 7.89 -39.17 -0.31 -1.55 15 17 C -0.11 -1.63 10.03 -39.64 -0.40 -2.02 15 18 C -0.12 -1.50 10.04 -39.48 -0.40 -1.90 15 19 C -0.10 -1.41 9.75 -39.63 -0.39 -1.79 15 20 C -0.07 -1.26 6.23 -39.11 -0.24 -1.50 15 21 I -0.03 -0.56 37.95 -73.02 -2.77 -3.33 15 22 H 0.14 2.90 6.23 -51.93 -0.32 2.58 15 23 H 0.09 1.78 7.36 -51.93 -0.38 1.40 15 24 H 0.28 6.37 8.31 -40.82 -0.34 6.04 15 25 H 0.14 2.59 7.62 -52.49 -0.40 2.19 15 26 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.19 8.06 -52.49 -0.42 0.77 15 28 H 0.13 1.49 8.06 -52.48 -0.42 1.07 15 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -27.19 280.33 -7.21 -34.40 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -1.82 Total: 2.22 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.84 Total: 4.72 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.95 Total: -41.80 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 53 Polarization: -0.56 SS G_CDS: -2.77 Total: -3.33 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.19 -7.21 -34.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000288492.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.023 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds