Wall clock time and date at job start Tue Mar 31 2020 05:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47251 * 85.15125 * 3 2 1 5 5 C 1.36881 * 120.00001 * 270.31900 * 4 3 2 6 6 H 1.07993 * 120.00139 * 193.98049 * 5 4 3 7 7 C 1.39048 * 119.99993 * 13.97807 * 5 4 3 8 8 N 1.31369 * 119.99580 * 10.30904 * 7 5 4 9 9 Si 1.86792 * 120.00102 * 190.31470 * 7 5 4 10 10 H 1.48503 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47464 * 119.99830 * 9 7 5 12 12 H 1.48500 * 109.47225 * 240.00172 * 9 7 5 13 13 C 1.34770 * 120.00206 * 90.31926 * 4 3 2 14 14 O 1.21592 * 120.00270 * 4.42146 * 13 4 3 15 15 C 1.47696 * 120.00222 * 184.42481 * 13 4 3 16 16 C 1.39683 * 120.15071 * 53.02172 * 15 13 4 17 17 C 1.37900 * 119.84838 * 180.02562 * 16 15 13 18 18 C 1.38425 * 120.17015 * 0.02562 * 17 16 15 19 19 C 1.38316 * 120.31562 * 359.97438 * 18 17 16 20 20 C 1.38040 * 120.14846 * 359.97438 * 19 18 17 21 21 I 2.09502 * 120.09050 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47609 * 325.14802 * 3 2 1 23 23 H 1.09001 * 109.47256 * 205.15326 * 3 2 1 24 24 H 0.97004 * 119.99658 * 179.97438 * 8 7 5 25 25 H 1.07998 * 120.07742 * 0.30028 * 16 15 13 26 26 H 1.07998 * 119.91503 * 180.02562 * 17 16 15 27 27 H 1.07999 * 119.83695 * 179.97438 * 18 17 16 28 28 H 1.08004 * 119.92652 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1159 -1.3762 5 6 3.3189 -1.3517 -1.9212 6 1 3.8839 -1.4443 -2.8368 7 6 2.8174 -2.4878 -1.2957 8 7 1.9655 -2.3690 -0.3028 9 14 3.3553 -4.1829 -1.8672 10 1 4.3131 -4.0447 -2.9936 11 1 4.0115 -4.8990 -0.7439 12 1 2.1685 -4.9526 -2.3190 13 6 3.3267 0.9936 -2.1058 14 8 3.2065 2.0915 -1.5972 15 6 3.7249 0.8761 -3.5232 16 6 2.9556 0.1162 -4.4074 17 6 3.3335 0.0102 -5.7294 18 6 4.4726 0.6541 -6.1810 19 6 5.2395 1.4083 -5.3115 20 6 4.8728 1.5242 -3.9857 21 53 6.0352 2.6677 -2.6704 22 1 2.9718 -0.8425 0.5873 23 1 2.9709 0.9310 0.4368 24 1 1.6154 -3.1616 0.1333 25 1 2.0644 -0.3836 -4.0576 26 1 2.7393 -0.5767 -6.4140 27 1 4.7638 0.5671 -7.2174 28 1 6.1268 1.9084 -5.6707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000288492.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:03 Heat of formation + Delta-G solvation = 39.989937 kcal Electronic energy + Delta-G solvation = -17203.599286 eV Core-core repulsion = 14272.354468 eV Total energy + Delta-G solvation = -2931.244818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 355.976 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22839 -39.30483 -37.44982 -36.31236 -33.55247 -33.14465 -32.27171 -29.41461 -28.65780 -26.73746 -24.19636 -22.91283 -21.19916 -19.93021 -18.51793 -17.93679 -16.94530 -16.41908 -16.25789 -16.11858 -15.41739 -14.82947 -14.59322 -14.45355 -14.01490 -13.99802 -13.53847 -13.34320 -13.09040 -12.93887 -12.54311 -12.41324 -12.14795 -11.99159 -11.78140 -11.28585 -11.12917 -10.76881 -10.33246 -9.95860 -9.78296 -9.62102 -8.34698 -5.96333 0.06153 0.33120 0.34321 1.42185 1.51134 1.62125 1.82546 1.99350 2.28958 2.37101 2.74783 3.03038 3.11740 3.68910 3.96183 4.07629 4.20697 4.44524 4.51283 4.66528 4.76900 4.98536 5.03927 5.32073 5.40327 5.42983 5.51350 5.61387 5.94024 6.34513 7.02235 7.04381 7.39465 7.79252 8.65458 Molecular weight = 355.98amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.005937 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.765842 B = 4714.742362 C = 5445.959664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.275 3.725 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.334 4.334 6 H 0.111 0.889 7 C 0.002 3.998 8 N -0.901 5.901 9 Si 0.988 3.012 10 H -0.256 1.256 11 H -0.276 1.276 12 H -0.288 1.288 13 C 0.488 3.512 14 O -0.593 6.593 15 C -0.087 4.087 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.096 4.096 19 C -0.095 4.095 20 C -0.087 4.087 21 I -0.036 7.036 22 H 0.137 0.863 23 H 0.100 0.900 24 H 0.273 0.727 25 H 0.116 0.884 26 H 0.158 0.842 27 H 0.172 0.828 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 4.238 -10.340 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.042 4.042 3 C 0.105 3.895 4 N -0.157 5.157 5 C -0.461 4.461 6 H 0.129 0.871 7 C -0.199 4.199 8 N -0.540 5.540 9 Si 0.812 3.188 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.215 1.215 13 C 0.277 3.723 14 O -0.479 6.479 15 C -0.092 4.092 16 C -0.108 4.108 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.228 4.228 21 I 0.113 6.887 22 H 0.154 0.846 23 H 0.118 0.882 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.176 0.824 27 H 0.189 0.811 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.089 5.431 -9.001 15.280 hybrid contribution -0.614 -1.709 -0.416 1.863 sum 10.475 3.722 -9.416 14.568 Atomic orbital electron populations 1.80832 1.14663 1.15199 1.09697 1.29574 0.95647 0.87726 0.91284 1.18805 0.80256 1.04163 0.86230 1.43655 1.55625 1.05970 1.10418 1.20038 1.33648 0.81603 1.10801 0.87094 1.25968 0.94670 1.03078 0.96228 1.69842 1.28651 1.31291 1.24238 0.84910 0.77905 0.77237 0.78710 1.17991 1.20159 1.21482 1.18482 0.83066 0.84097 0.86658 1.90688 1.58157 1.26603 1.72420 1.19792 0.96314 0.99023 0.94077 1.21383 0.99289 0.95979 0.94162 1.21544 0.97553 0.99049 0.94369 1.21694 0.93669 0.95073 1.01150 1.21296 1.00819 0.99126 0.90361 1.24499 0.97922 1.02699 0.97673 1.96606 1.62511 1.67287 1.62250 0.84559 0.88188 0.91602 0.86575 0.82397 0.81078 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.07 18.54 20.01 0.37 -26.70 15 2 C 0.27 13.42 13.45 89.44 1.20 14.62 15 3 C 0.23 10.29 5.21 84.57 0.44 10.73 15 4 N -0.44 -20.05 2.58 -648.88 -1.67 -21.72 15 5 C -0.33 -15.04 8.25 84.10 0.69 -14.35 15 6 H 0.11 4.84 5.97 -2.91 -0.02 4.82 15 7 C 0.00 0.08 5.20 84.96 0.44 0.52 15 8 N -0.90 -43.09 8.51 21.68 0.18 -42.91 15 9 Si 0.99 36.59 29.57 68.60 2.03 38.62 15 10 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 11 H -0.28 -10.15 7.11 99.48 0.71 -9.44 15 12 H -0.29 -11.02 7.11 99.48 0.71 -10.31 15 13 C 0.49 21.89 6.41 86.74 0.56 22.45 15 14 O -0.59 -28.62 15.03 -4.01 -0.06 -28.68 15 15 C -0.09 -3.34 4.72 -20.08 -0.09 -3.44 15 16 C -0.09 -3.02 7.89 22.54 0.18 -2.84 15 17 C -0.11 -2.65 10.03 22.23 0.22 -2.43 15 18 C -0.10 -2.01 10.04 22.33 0.22 -1.78 15 19 C -0.10 -2.37 9.75 22.24 0.22 -2.16 15 20 C -0.09 -2.86 6.23 22.58 0.14 -2.72 15 21 I -0.04 -1.16 37.95 -18.82 -0.71 -1.87 15 22 H 0.14 6.00 6.23 -2.39 -0.01 5.99 15 23 H 0.10 4.14 7.36 -2.39 -0.02 4.12 15 24 H 0.27 12.78 8.31 -92.71 -0.77 12.01 15 25 H 0.12 4.42 7.62 -2.91 -0.02 4.39 15 26 H 0.16 2.87 8.06 -2.91 -0.02 2.84 15 27 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 28 H 0.15 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -59.12 280.33 5.57 -53.55 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.21 Total: 11.12 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 4.22 Total: 18.60 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -1.12 Total: -91.33 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.06 Total: -28.68 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 53 Polarization: -1.16 SS G_CDS: -0.71 Total: -1.87 kcal Total: -59.12 5.57 -53.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000288492.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.539 kcal (2) G-P(sol) polarization free energy of solvation -59.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds