Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86798 * 120.00279 * 2 1 4 4 H 1.48493 * 109.47330 * 239.99992 * 3 2 1 5 5 H 1.48503 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47061 * 119.99546 * 3 2 1 7 7 C 1.40164 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.41242 * 120.00177 * 0.02562 * 7 2 1 10 10 O 1.21850 * 119.99648 * 359.97438 * 9 7 2 11 11 N 1.34770 * 119.99972 * 179.97438 * 9 7 2 12 12 C 1.37923 * 119.99979 * 179.97438 * 11 9 7 13 13 N 1.30344 * 125.43981 * 0.03344 * 12 11 9 14 14 C 1.31251 * 117.06600 * 179.73169 * 13 12 11 15 15 C 1.34208 * 115.74512 * 0.45099 * 14 13 12 16 16 C 1.50698 * 125.89815 * 179.84588 * 15 14 13 17 17 C 1.50702 * 109.47270 * 89.71786 * 16 15 14 18 18 C 1.38225 * 120.00242 * 99.99728 * 17 16 15 19 19 C 1.38328 * 119.99957 * 179.72517 * 18 17 16 20 20 Cl 1.73608 * 119.99569 * 179.97438 * 19 18 17 21 21 C 1.38373 * 120.00291 * 359.97438 * 19 18 17 22 22 C 1.38174 * 120.00173 * 359.95721 * 21 19 18 23 23 C 1.38337 * 120.00023 * 279.72701 * 17 16 15 24 24 Cl 1.73598 * 119.99734 * 0.24949 * 23 17 16 25 25 S 1.76168 * 125.43766 * 180.02562 * 12 11 9 26 26 H 0.97004 * 120.00173 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99938 * 0.02562 * 11 9 7 28 28 H 1.08001 * 122.13056 * 180.26857 * 14 13 12 29 29 H 1.09002 * 109.47496 * 329.72228 * 16 15 14 30 30 H 1.09001 * 109.47309 * 209.71795 * 16 15 14 31 31 H 1.08000 * 119.99292 * 359.70254 * 18 17 16 32 32 H 1.07999 * 120.00061 * 179.97438 * 21 19 18 33 33 H 1.07997 * 120.00442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2124 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0070 -1.2139 0.0005 8 1 3.0869 -1.2139 0.0010 9 6 1.3007 -2.4371 0.0005 10 8 0.0822 -2.4370 0.0005 11 7 1.9745 -3.6042 0.0005 12 6 1.2849 -4.7986 0.0011 13 7 -0.0127 -4.9222 0.0010 14 6 -0.4965 -6.1423 -0.0039 15 6 0.4124 -7.1298 0.0012 16 6 0.1126 -8.6066 0.0006 17 6 0.0129 -9.0984 -1.4205 18 6 1.0834 -9.7505 -2.0029 19 6 0.9898 -10.2069 -3.3054 20 17 2.3348 -11.0253 -4.0370 21 6 -0.1757 -10.0111 -4.0251 22 6 -1.2464 -9.3605 -3.4425 23 6 -1.1521 -8.9021 -2.1402 24 17 -2.4969 -8.0836 -1.4086 25 16 2.0171 -6.4009 0.0018 26 1 -0.4850 0.8401 -0.0004 27 1 2.9445 -3.6042 0.0009 28 1 -1.5584 -6.3391 -0.0087 29 1 -0.8321 -8.7859 0.5141 30 1 0.9123 -9.1400 0.5143 31 1 1.9931 -9.9033 -1.4411 32 1 -0.2486 -10.3671 -5.0421 33 1 -2.1562 -9.2080 -4.0040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000442649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = 22.734871 kcal Electronic energy + Delta-G solvation = -22900.846857 eV Core-core repulsion = 19105.193992 eV Total energy + Delta-G solvation = -3795.652865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.989 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91685 -39.08143 -37.38732 -36.97208 -36.40426 -34.21688 -33.25260 -32.41242 -30.87986 -29.52718 -27.32815 -25.66010 -23.74968 -23.11771 -21.96965 -21.06426 -18.69930 -18.38676 -17.46370 -16.59660 -16.24280 -16.02139 -15.59074 -15.44650 -14.67653 -14.46425 -14.23145 -14.08854 -13.81729 -13.57935 -12.86770 -12.76949 -12.60731 -12.39711 -12.38921 -12.09759 -11.94936 -11.43044 -11.25001 -11.16519 -11.11688 -11.03221 -10.72896 -10.59359 -10.42581 -9.66561 -9.31453 -8.95141 -8.87561 -8.78474 -8.66166 -7.67171 -7.17238 -6.43157 -4.99578 0.67369 0.85175 1.41733 1.62341 1.73811 1.99926 2.23648 3.03751 3.09186 3.11350 3.17076 3.63420 3.90426 4.24476 4.36781 4.39780 4.42166 4.76770 4.90014 5.08063 5.23577 5.25795 5.49128 5.49393 5.61804 5.66034 5.75542 5.82373 5.95507 6.21748 6.28556 6.65688 7.15242 7.30530 7.76961 7.90116 8.56034 8.70982 9.13992 10.31132 10.50464 Molecular weight = 355.99amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002562 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.698003 B =10927.957106 C =11671.338745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.086 3.914 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.529 3.471 10 O -0.514 6.514 11 N -0.637 5.637 12 C 0.364 3.636 13 N -0.490 5.490 14 C 0.103 3.897 15 C -0.282 4.282 16 C 0.013 3.987 17 C -0.051 4.051 18 C -0.093 4.093 19 C -0.030 4.030 20 Cl -0.066 7.066 21 C -0.105 4.105 22 C -0.096 4.096 23 C -0.025 4.025 24 Cl -0.051 7.051 25 S -0.008 6.008 26 H 0.276 0.724 27 H 0.403 0.597 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -20.585 -4.812 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.336 3.664 10 O -0.391 6.391 11 N -0.286 5.286 12 C -0.007 4.007 13 N -0.212 5.212 14 C -0.050 4.050 15 C -0.405 4.405 16 C -0.027 4.027 17 C -0.052 4.052 18 C -0.112 4.112 19 C -0.056 4.056 20 Cl -0.037 7.037 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.052 4.052 24 Cl -0.022 7.022 25 S 0.240 5.760 26 H 0.087 0.913 27 H 0.238 0.762 28 H 0.179 0.821 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.537 -20.169 -4.799 20.789 hybrid contribution 0.198 0.620 -0.135 0.665 sum 1.734 -19.548 -4.934 20.236 Atomic orbital electron populations 1.69994 1.07313 1.28310 1.31301 1.25766 0.94716 1.00728 0.92538 0.86264 0.79795 0.80107 0.79738 1.18962 1.20249 1.18955 1.19851 0.94412 0.89510 1.53094 0.90968 1.17270 0.88252 0.81232 0.79682 1.90819 1.12724 1.83998 1.51511 1.44458 1.09632 1.02452 1.72085 1.25100 0.89858 0.89996 0.95703 1.66785 1.08214 1.22212 1.23962 1.21763 1.00687 0.85509 0.97081 1.24756 0.93217 0.98366 1.24198 1.18774 1.03578 0.89310 0.91043 1.19756 0.91608 0.96544 0.97303 1.20892 0.98882 0.98054 0.93408 1.20943 0.90147 1.00334 0.94225 1.98381 1.45142 1.77400 1.82793 1.20964 0.91320 0.99695 1.00460 1.21006 0.99557 0.97770 0.93170 1.20905 0.90368 0.99603 0.94298 1.98389 1.44125 1.77012 1.82645 1.84571 1.10930 1.03028 1.77484 0.91313 0.76189 0.82070 0.88612 0.89702 0.84095 0.84152 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.29 11.72 55.56 0.65 -20.64 16 2 C 0.09 2.28 5.50 -17.34 -0.10 2.19 16 3 Si 0.92 18.96 29.56 -169.99 -5.02 13.94 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.53 -14.21 9.29 -37.72 -0.35 -14.56 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.53 14.74 7.51 -15.12 -0.11 14.63 16 10 O -0.51 -16.48 13.50 5.05 0.07 -16.41 16 11 N -0.64 -14.40 5.35 -14.63 -0.08 -14.48 16 12 C 0.36 7.90 8.26 -87.81 -0.72 7.17 16 13 N -0.49 -11.58 8.65 -13.94 -0.12 -11.70 16 14 C 0.10 1.95 10.38 -19.22 -0.20 1.75 16 15 C -0.28 -4.42 5.79 -35.73 -0.21 -4.63 16 16 C 0.01 0.15 5.36 -29.03 -0.16 -0.01 16 17 C -0.05 -0.58 5.12 -104.59 -0.54 -1.11 16 18 C -0.09 -0.97 9.45 -39.55 -0.37 -1.35 16 19 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 20 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 21 C -0.11 -0.96 9.83 -39.56 -0.39 -1.35 16 22 C -0.10 -0.94 9.83 -39.55 -0.39 -1.33 16 23 C -0.02 -0.28 6.31 -39.49 -0.25 -0.53 16 24 Cl -0.05 -0.61 24.74 -51.86 -1.28 -1.90 16 25 S -0.01 -0.13 23.44 -107.50 -2.52 -2.65 16 26 H 0.28 7.14 8.29 -40.82 -0.34 6.80 16 27 H 0.40 7.46 8.77 -40.82 -0.36 7.10 16 28 H 0.16 2.81 6.05 -52.49 -0.32 2.49 16 29 H 0.10 1.02 7.35 -51.93 -0.38 0.64 16 30 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 31 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -33.72 336.66 -11.05 -44.77 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.29 Total: 5.78 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -4.03 Total: 0.33 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.45 Total: -46.82 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.07 Total: -16.41 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.52 Total: -2.65 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -2.78 Total: -4.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.72 -11.05 -44.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000442649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.507 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds