Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86798 * 120.00279 * 2 1 4 4 H 1.48493 * 109.47330 * 239.99992 * 3 2 1 5 5 H 1.48503 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47061 * 119.99546 * 3 2 1 7 7 C 1.40164 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.41242 * 120.00177 * 0.02562 * 7 2 1 10 10 O 1.21850 * 119.99648 * 359.97438 * 9 7 2 11 11 N 1.34770 * 119.99972 * 179.97438 * 9 7 2 12 12 C 1.37923 * 119.99979 * 179.97438 * 11 9 7 13 13 N 1.30344 * 125.43981 * 0.03344 * 12 11 9 14 14 C 1.31251 * 117.06600 * 179.73169 * 13 12 11 15 15 C 1.34208 * 115.74512 * 0.45099 * 14 13 12 16 16 C 1.50698 * 125.89815 * 179.84588 * 15 14 13 17 17 C 1.50702 * 109.47270 * 89.71786 * 16 15 14 18 18 C 1.38225 * 120.00242 * 99.99728 * 17 16 15 19 19 C 1.38328 * 119.99957 * 179.72517 * 18 17 16 20 20 Cl 1.73608 * 119.99569 * 179.97438 * 19 18 17 21 21 C 1.38373 * 120.00291 * 359.97438 * 19 18 17 22 22 C 1.38174 * 120.00173 * 359.95721 * 21 19 18 23 23 C 1.38337 * 120.00023 * 279.72701 * 17 16 15 24 24 Cl 1.73598 * 119.99734 * 0.24949 * 23 17 16 25 25 S 1.76168 * 125.43766 * 180.02562 * 12 11 9 26 26 H 0.97004 * 120.00173 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99938 * 0.02562 * 11 9 7 28 28 H 1.08001 * 122.13056 * 180.26857 * 14 13 12 29 29 H 1.09002 * 109.47496 * 329.72228 * 16 15 14 30 30 H 1.09001 * 109.47309 * 209.71795 * 16 15 14 31 31 H 1.08000 * 119.99292 * 359.70254 * 18 17 16 32 32 H 1.07999 * 120.00061 * 179.97438 * 21 19 18 33 33 H 1.07997 * 120.00442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2124 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0070 -1.2139 0.0005 8 1 3.0869 -1.2139 0.0010 9 6 1.3007 -2.4371 0.0005 10 8 0.0822 -2.4370 0.0005 11 7 1.9745 -3.6042 0.0005 12 6 1.2849 -4.7986 0.0011 13 7 -0.0127 -4.9222 0.0010 14 6 -0.4965 -6.1423 -0.0039 15 6 0.4124 -7.1298 0.0012 16 6 0.1126 -8.6066 0.0006 17 6 0.0129 -9.0984 -1.4205 18 6 1.0834 -9.7505 -2.0029 19 6 0.9898 -10.2069 -3.3054 20 17 2.3348 -11.0253 -4.0370 21 6 -0.1757 -10.0111 -4.0251 22 6 -1.2464 -9.3605 -3.4425 23 6 -1.1521 -8.9021 -2.1402 24 17 -2.4969 -8.0836 -1.4086 25 16 2.0171 -6.4009 0.0018 26 1 -0.4850 0.8401 -0.0004 27 1 2.9445 -3.6042 0.0009 28 1 -1.5584 -6.3391 -0.0087 29 1 -0.8321 -8.7859 0.5141 30 1 0.9123 -9.1400 0.5143 31 1 1.9931 -9.9033 -1.4411 32 1 -0.2486 -10.3671 -5.0421 33 1 -2.1562 -9.2080 -4.0040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000442649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = 2.434554 kcal Electronic energy + Delta-G solvation = -22901.727145 eV Core-core repulsion = 19105.193992 eV Total energy + Delta-G solvation = -3796.533153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.989 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95670 -40.52063 -39.14039 -37.81254 -37.23839 -35.73687 -34.70217 -34.32950 -31.69233 -30.70171 -29.17115 -27.01499 -25.24283 -23.93611 -23.21362 -22.44593 -20.39702 -20.02525 -18.44736 -18.08437 -17.43581 -17.37056 -16.83648 -16.78592 -16.04681 -15.84841 -15.69657 -15.25922 -14.87881 -14.60590 -14.53506 -14.10559 -13.94423 -13.67936 -13.33683 -13.19630 -13.06267 -12.87297 -12.75921 -12.73347 -12.14628 -12.06843 -11.99613 -11.92831 -11.71963 -11.32224 -10.89751 -10.57490 -10.16109 -10.02098 -9.66010 -9.59658 -8.75854 -8.39508 -7.06433 -0.19455 -0.08335 0.06576 0.19774 0.80177 0.95180 1.17793 1.40815 1.43235 1.56832 2.05930 2.20260 2.37390 2.48066 2.68243 3.56390 3.63525 3.64079 3.92658 3.99800 4.08342 4.12076 4.28790 4.37702 4.68426 4.74351 4.83688 4.95407 5.07143 5.16302 5.18985 5.22476 5.51227 5.69102 5.87932 6.02677 6.69284 6.91681 7.42590 8.36006 8.54124 Molecular weight = 355.99amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002562 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.698003 B =10927.957106 C =11671.338745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.030 3.970 3 Si 1.006 2.994 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.558 4.558 8 H 0.099 0.901 9 C 0.518 3.482 10 O -0.573 6.573 11 N -0.640 5.640 12 C 0.309 3.691 13 N -0.541 5.541 14 C 0.065 3.935 15 C -0.247 4.247 16 C 0.011 3.989 17 C -0.065 4.065 18 C -0.095 4.095 19 C -0.037 4.037 20 Cl -0.059 7.059 21 C -0.099 4.099 22 C -0.100 4.100 23 C -0.039 4.039 24 Cl -0.064 7.064 25 S 0.088 5.912 26 H 0.280 0.720 27 H 0.420 0.580 28 H 0.167 0.833 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -22.331 -5.428 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.175 1.175 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.593 4.593 8 H 0.117 0.883 9 C 0.325 3.675 10 O -0.455 6.455 11 N -0.290 5.290 12 C -0.060 4.060 13 N -0.263 5.263 14 C -0.087 4.087 15 C -0.371 4.371 16 C -0.029 4.029 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.064 4.064 20 Cl -0.030 7.030 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.066 4.066 24 Cl -0.035 7.035 25 S 0.337 5.663 26 H 0.091 0.909 27 H 0.257 0.743 28 H 0.184 0.816 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.936 -22.000 -5.416 22.997 hybrid contribution -0.524 0.803 -0.007 0.959 sum 3.412 -21.197 -5.423 22.144 Atomic orbital electron populations 1.70176 1.09883 1.29764 1.32933 1.27100 0.95496 1.05310 0.90973 0.84942 0.78149 0.73876 0.80610 1.17473 1.19916 1.17421 1.20443 0.95845 0.89919 1.53103 0.88343 1.17604 0.87822 0.83068 0.78985 1.90764 1.15019 1.85687 1.53992 1.43694 1.10115 1.02179 1.73055 1.25149 0.90461 0.91842 0.98522 1.66672 1.10441 1.25362 1.23873 1.21818 1.01575 0.85027 1.00273 1.25474 0.92917 1.00126 1.18540 1.18978 1.05323 0.86389 0.92191 1.19684 0.92129 0.97873 0.96938 1.21064 0.98982 0.97559 0.93737 1.21085 0.90652 1.00320 0.94316 1.98388 1.44770 1.77198 1.82620 1.21265 0.90626 0.98545 1.01369 1.21253 1.00524 0.97362 0.92686 1.21135 0.90231 1.00102 0.95140 1.98389 1.44846 1.77384 1.82914 1.84134 1.09149 0.97788 1.75198 0.90949 0.74278 0.81642 0.87501 0.86848 0.82609 0.81865 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.91 11.72 21.86 0.26 -47.65 16 2 C 0.03 1.60 5.50 85.34 0.47 2.07 16 3 Si 1.01 38.90 29.56 68.60 2.03 40.93 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.56 -30.38 9.29 23.48 0.22 -30.16 16 8 H 0.10 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.52 30.16 7.51 84.98 0.64 30.79 16 10 O -0.57 -39.01 13.50 -4.83 -0.07 -39.07 16 11 N -0.64 -29.75 5.35 -318.35 -1.70 -31.45 16 12 C 0.31 13.69 8.26 179.37 1.48 15.17 16 13 N -0.54 -26.63 8.65 -198.01 -1.71 -28.34 16 14 C 0.06 2.49 10.38 83.86 0.87 3.36 16 15 C -0.25 -7.39 5.79 24.77 0.14 -7.25 16 16 C 0.01 0.23 5.36 29.10 0.16 0.38 16 17 C -0.06 -1.32 5.12 -19.84 -0.10 -1.42 16 18 C -0.09 -1.69 9.45 22.29 0.21 -1.47 16 19 C -0.04 -0.63 6.32 22.32 0.14 -0.49 16 20 Cl -0.06 -0.93 28.96 -2.72 -0.08 -1.01 16 21 C -0.10 -1.55 9.83 22.29 0.22 -1.33 16 22 C -0.10 -1.74 9.83 22.29 0.22 -1.52 16 23 C -0.04 -0.84 6.31 22.33 0.14 -0.70 16 24 Cl -0.06 -1.54 24.74 -2.72 -0.07 -1.60 16 25 S 0.09 2.69 23.44 -56.49 -1.32 1.36 16 26 H 0.28 15.16 8.29 -92.71 -0.77 14.39 16 27 H 0.42 15.67 8.77 -92.71 -0.81 14.86 16 28 H 0.17 5.99 6.05 -2.91 -0.02 5.98 16 29 H 0.11 2.05 7.35 -2.39 -0.02 2.04 16 30 H 0.11 1.75 8.00 -2.39 -0.02 1.73 16 31 H 0.16 2.23 8.04 -2.91 -0.02 2.21 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -78.57 336.66 2.53 -76.04 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.39 Total: 23.37 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.81 Total: 7.43 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -3.16 Total: -107.45 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.07 Total: -39.07 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.32 Total: 1.36 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.15 Total: -2.61 kcal Total: -78.57 2.53 -76.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000442649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.477 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds