Wall clock time and date at job start Tue Mar 31 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34384 * 125.23332 * 2 1 4 4 C 1.46841 * 106.48025 * 179.97438 * 3 2 1 5 5 C 1.40690 * 127.17040 * 180.02562 * 4 3 2 6 6 N 1.32375 * 120.00056 * 179.97438 * 5 4 3 7 7 N 1.28995 * 119.99963 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00486 * 179.97438 * 7 6 5 9 9 O 1.21988 * 119.99384 * 0.02562 * 8 7 6 10 10 C 1.41108 * 120.00227 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99781 * 0.02562 * 10 8 7 12 12 C 1.40787 * 119.99926 * 180.02562 * 10 8 7 13 13 N 1.30273 * 119.99725 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99981 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47059 * 59.99774 * 14 12 10 16 16 H 1.48496 * 109.47315 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47131 * 300.00320 * 14 12 10 18 18 C 1.40926 * 105.66555 * 359.97438 * 4 3 2 19 19 C 1.50694 * 126.08865 * 179.97438 * 18 4 3 20 20 N 1.34091 * 107.81907 * 359.73174 * 18 4 3 21 21 C 1.39992 * 124.74748 * 180.25547 * 20 18 4 22 22 C 1.38905 * 120.06934 * 64.96430 * 21 20 18 23 23 C 1.38101 * 119.92271 * 179.74228 * 22 21 20 24 24 C 1.38305 * 120.07414 * 0.53343 * 23 22 21 25 25 N 1.48014 * 119.92572 * 179.74336 * 24 23 22 26 26 O 1.31705 * 119.99512 * 179.97438 * 25 24 23 27 27 O 1.31696 * 120.00378 * 359.97438 * 25 24 23 28 28 C 1.38302 * 120.14123 * 359.72523 * 24 23 22 29 29 C 1.38095 * 120.07378 * 0.02562 * 28 24 23 30 30 H 1.09002 * 109.47152 * 90.02637 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02738 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02718 * 1 2 3 33 33 H 1.07994 * 126.76120 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.99430 * 359.97272 * 5 4 3 35 35 H 0.97005 * 120.00253 * 0.02562 * 7 6 5 36 36 H 0.97006 * 120.00130 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47681 * 90.02334 * 19 18 4 38 38 H 1.09005 * 109.47476 * 210.02640 * 19 18 4 39 39 H 1.09001 * 109.47448 * 330.02017 * 19 18 4 40 40 H 1.08004 * 120.04143 * 359.97438 * 22 21 20 41 41 H 1.08008 * 119.96110 * 180.22890 * 23 22 21 42 42 H 1.07996 * 119.95967 * 180.02562 * 28 24 23 43 43 H 1.08000 * 120.03447 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2823 1.0977 0.0000 4 6 3.6728 0.6256 0.0006 5 6 4.8381 1.4139 0.0014 6 7 6.0286 0.8352 0.0024 7 7 7.0971 1.5579 0.0025 8 6 8.3093 0.9688 0.0041 9 8 8.3960 -0.2479 0.0049 10 6 9.4781 1.7595 0.0037 11 1 9.4012 2.8368 0.0026 12 6 10.7443 1.1441 0.0048 13 7 10.8369 -0.1553 0.0067 14 14 12.2915 2.1908 0.0036 15 1 12.3090 3.0498 1.2149 16 1 13.4860 1.3086 0.0057 17 1 12.3094 3.0463 -1.2100 18 6 3.5969 -0.7816 0.0016 19 6 4.7650 -1.7336 0.0019 20 7 2.3000 -1.1226 0.0075 21 6 1.8209 -2.4380 0.0153 22 6 2.0643 -3.2609 1.1076 23 6 1.5856 -4.5562 1.1144 24 6 0.8742 -5.0379 0.0306 25 7 0.3675 -6.4286 0.0390 26 8 -0.3106 -6.8886 -0.9921 27 8 0.5948 -7.2061 1.0774 28 6 0.6348 -4.2228 -1.0607 29 6 1.1062 -2.9249 -1.0717 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 1.9485 2.1247 -0.0004 34 1 4.7612 2.4911 0.0010 35 1 7.0281 2.5256 0.0023 36 1 11.7093 -0.5794 0.0078 37 1 5.0467 -1.9628 1.0297 38 1 4.4846 -2.6532 -0.5116 39 1 5.6089 -1.2734 -0.5121 40 1 2.6240 -2.8869 1.9522 41 1 1.7713 -5.1954 1.9650 42 1 0.0785 -4.6018 -1.9053 43 1 0.9185 -2.2888 -1.9241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000447613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:48 Heat of formation + Delta-G solvation = 86.538867 kcal Electronic energy + Delta-G solvation = -29783.060587 eV Core-core repulsion = 25413.104225 eV Total energy + Delta-G solvation = -4369.956362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.81375 -41.07439 -40.46270 -39.32971 -37.57754 -35.71134 -34.96275 -34.63657 -33.93387 -32.72953 -32.22375 -30.69574 -30.07314 -28.83370 -27.38214 -25.74429 -24.54553 -24.26928 -23.14404 -21.93745 -21.21538 -20.65146 -19.99320 -19.32892 -18.99695 -18.29626 -17.65882 -17.22107 -17.13542 -17.08586 -16.14329 -16.04365 -15.74576 -15.45947 -15.26876 -15.09599 -14.87667 -14.73750 -14.12769 -14.10287 -14.07454 -13.79284 -13.39256 -13.31394 -13.29507 -13.23099 -12.97846 -12.75464 -12.71646 -12.65681 -12.47204 -12.45050 -12.40684 -12.08396 -11.99395 -11.05372 -10.95268 -10.71146 -10.67808 -10.25226 -10.02459 -9.16429 -8.46862 -8.13066 -7.08232 -2.06039 -0.33955 -0.31039 -0.11666 0.52908 1.30659 1.38899 1.43671 1.55013 1.58521 1.91448 2.17004 2.25646 2.63266 2.71663 3.09757 3.20759 3.38843 3.58658 3.62758 3.63459 3.92723 3.93048 4.05853 4.21692 4.35294 4.40874 4.44078 4.48227 4.56906 4.58814 4.67026 4.71506 4.80493 4.83436 4.95994 5.03609 5.12607 5.14893 5.24397 5.38115 5.42566 5.46997 5.80434 5.94700 6.08678 6.12228 6.38249 6.63876 7.03205 7.67765 8.40824 8.64405 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002063 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.145674 B =13570.323481 C =15233.474766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.014 3.986 3 C -0.157 4.157 4 C -0.136 4.136 5 C 0.042 3.958 6 N -0.257 5.257 7 N -0.542 5.542 8 C 0.535 3.465 9 O -0.605 6.605 10 C -0.562 4.562 11 H 0.095 0.905 12 C 0.032 3.968 13 N -0.794 5.794 14 Si 1.006 2.994 15 H -0.251 1.251 16 H -0.271 1.271 17 H -0.251 1.251 18 C 0.051 3.949 19 C -0.075 4.075 20 N -0.406 5.406 21 C 0.178 3.822 22 C -0.112 4.112 23 C -0.027 4.027 24 C -0.018 4.018 25 N -0.014 5.014 26 O -0.178 6.178 27 O -0.198 6.198 28 C -0.022 4.022 29 C -0.102 4.102 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.173 0.827 34 H 0.126 0.874 35 H 0.375 0.625 36 H 0.283 0.717 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.174 0.826 42 H 0.184 0.816 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.938 0.888 -0.500 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.145 4.145 5 C -0.160 4.160 6 N -0.074 5.074 7 N -0.286 5.286 8 C 0.346 3.654 9 O -0.490 6.490 10 C -0.597 4.597 11 H 0.114 0.886 12 C -0.187 4.187 13 N -0.421 5.421 14 Si 0.824 3.176 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.175 1.175 18 C -0.065 4.065 19 C -0.133 4.133 20 N -0.082 5.082 21 C 0.088 3.912 22 C -0.132 4.132 23 C -0.047 4.047 24 C -0.104 4.104 25 N 0.462 4.538 26 O -0.373 6.373 27 O -0.387 6.387 28 C -0.042 4.042 29 C -0.121 4.121 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.143 0.857 35 H 0.213 0.787 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.177 0.823 41 H 0.192 0.808 42 H 0.201 0.799 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -21.967 -0.556 -0.465 21.979 hybrid contribution 0.624 0.926 0.141 1.126 sum -21.342 0.370 -0.325 21.348 Atomic orbital electron populations 1.20482 0.84987 1.04252 1.04100 1.20897 0.94715 0.83453 1.09916 1.22013 0.89080 0.98860 1.08283 1.18449 0.92614 0.90276 1.13145 1.22378 0.88649 0.97489 1.07496 1.71883 0.94875 1.30311 1.10354 1.44600 1.04087 1.07643 1.72271 1.17330 0.81374 0.88237 0.78461 1.90660 1.86023 1.16134 1.56146 1.20510 0.90292 0.95499 1.53437 0.88645 1.27175 1.04499 0.96246 0.90823 1.69990 1.27442 1.12688 1.32017 0.84940 0.74035 0.77973 0.80626 1.17484 1.19542 1.17481 1.21282 0.83654 0.94558 1.06978 1.20256 0.94432 0.96334 1.02244 1.40871 1.05025 1.03495 1.58837 1.18364 0.94587 0.83911 0.94384 1.21404 1.00585 0.92410 0.98771 1.21131 0.91069 0.95348 0.97123 1.20680 1.08488 0.79959 1.01302 1.50705 0.97603 1.04373 1.01165 1.96272 1.38402 1.80037 1.22542 1.96299 1.64257 1.56215 1.21939 1.21233 0.94896 0.91551 0.96506 1.21457 0.97720 0.94803 0.98141 0.89191 0.88281 0.91641 0.81002 0.85727 0.78711 0.90629 0.91811 0.91692 0.90953 0.82264 0.80828 0.79881 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.80 71.24 0.70 -0.06 16 2 C 0.01 0.26 6.76 40.80 0.28 0.53 16 3 C -0.16 -3.36 10.97 23.64 0.26 -3.10 16 4 C -0.14 -4.15 6.18 -19.77 -0.12 -4.27 16 5 C 0.04 1.47 10.70 85.21 0.91 2.38 16 6 N -0.26 -11.62 8.05 -55.65 -0.45 -12.06 16 7 N -0.54 -25.95 5.88 -180.20 -1.06 -27.01 16 8 C 0.53 31.32 7.63 84.94 0.65 31.97 16 9 O -0.60 -40.91 15.20 -5.28 -0.08 -40.99 16 10 C -0.56 -30.77 9.31 23.60 0.22 -30.55 16 11 H 0.10 4.56 7.86 -2.91 -0.02 4.53 16 12 C 0.03 1.72 5.51 85.55 0.47 2.20 16 13 N -0.79 -46.71 11.72 21.96 0.26 -46.45 16 14 Si 1.01 38.34 29.57 68.60 2.03 40.37 16 15 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 16 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 17 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 18 C 0.05 1.51 6.91 42.87 0.30 1.80 16 19 C -0.07 -2.55 9.19 71.23 0.65 -1.89 16 20 N -0.41 -8.59 2.73 -316.85 -0.87 -9.45 16 21 C 0.18 2.92 4.40 38.16 0.17 3.09 16 22 C -0.11 -1.71 9.58 22.40 0.21 -1.50 16 23 C -0.03 -0.39 9.57 22.25 0.21 -0.18 16 24 C -0.02 -0.29 6.89 36.41 0.25 -0.04 16 25 N -0.01 -0.32 4.98 -46.39 -0.23 -0.55 16 26 O -0.18 -4.24 19.15 3.51 0.07 -4.17 16 27 O -0.20 -5.06 19.15 3.52 0.07 -4.99 16 28 C -0.02 -0.26 9.57 22.25 0.21 -0.05 16 29 C -0.10 -1.18 9.62 22.40 0.22 -0.97 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.57 7.74 -2.38 -0.02 0.55 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.13 3.59 7.96 -2.91 -0.02 3.57 16 35 H 0.37 14.95 8.42 -219.72 -1.85 13.10 16 36 H 0.28 14.90 8.28 -92.70 -0.77 14.14 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.88 7.76 -2.38 -0.02 1.86 16 39 H 0.07 3.18 6.31 -2.39 -0.02 3.16 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.17 2.15 7.57 -2.91 -0.02 2.13 16 42 H 0.18 1.45 7.57 -2.91 -0.02 1.43 16 43 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -81.98 388.38 4.56 -77.43 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.77 Total: 28.52 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.59 Total: -0.63 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -2.35 Total: -95.53 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: 0.05 Total: -50.15 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -81.98 4.56 -77.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000447613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.964 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds