Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46980 * 116.30410 * 3 2 1 5 5 C 1.36660 * 119.99954 * 270.36619 * 4 3 2 6 6 H 1.08001 * 119.99646 * 193.09686 * 5 4 3 7 7 C 1.39193 * 120.00261 * 13.09084 * 5 4 3 8 8 N 1.31272 * 119.99791 * 9.82309 * 7 5 4 9 9 Si 1.86791 * 120.00194 * 189.82459 * 7 5 4 10 10 H 1.48505 * 109.47098 * 90.00232 * 9 7 5 11 11 H 1.48500 * 109.47359 * 210.00190 * 9 7 5 12 12 H 1.48502 * 109.47267 * 330.00123 * 9 7 5 13 13 C 1.34772 * 120.00266 * 90.36192 * 4 3 2 14 14 O 1.21607 * 120.00513 * 185.28589 * 13 4 3 15 15 C 1.47696 * 119.99822 * 5.29005 * 13 4 3 16 16 C 1.38937 * 121.34991 * 54.76958 * 15 13 4 17 17 C 1.40188 * 119.38878 * 179.97438 * 16 15 13 18 18 C 1.48283 * 118.84535 * 179.97438 * 17 16 15 19 19 C 1.39403 * 120.12868 * 359.72708 * 18 17 16 20 20 C 1.37998 * 119.87314 * 179.76979 * 19 18 17 21 21 C 1.38333 * 120.12587 * 0.48028 * 20 19 18 22 22 C 1.38330 * 120.25613 * 359.79675 * 21 20 19 23 23 C 1.38006 * 120.12831 * 359.94784 * 22 21 20 24 24 N 1.31695 * 122.30765 * 0.02562 * 17 16 15 25 25 C 1.33390 * 122.35271 * 359.95370 * 24 17 16 26 26 C 1.40725 * 121.07717 * 180.02562 * 25 24 17 27 27 C 1.36106 * 119.72065 * 180.02562 * 26 25 24 28 28 C 1.39307 * 121.08922 * 0.02562 * 27 26 25 29 29 C 1.36365 * 120.81588 * 0.27379 * 28 27 26 30 30 C 1.39887 * 119.60318 * 359.45358 * 29 28 27 31 31 H 1.09004 * 109.47461 * 356.30655 * 3 2 1 32 32 H 1.08997 * 109.47020 * 236.30444 * 3 2 1 33 33 H 0.96995 * 120.00209 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.30688 * 0.02562 * 16 15 13 35 35 H 1.08005 * 120.05730 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.93589 * 180.27659 * 20 19 18 37 37 H 1.08002 * 119.86844 * 179.76849 * 21 20 19 38 38 H 1.08001 * 119.93931 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.06307 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.14266 * 359.97438 * 26 25 24 41 41 H 1.08005 * 119.45179 * 179.97438 * 27 26 25 42 42 H 1.07998 * 119.58915 * 180.02562 * 28 27 26 43 43 H 1.08008 * 120.19859 * 179.76501 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6129 -1.2382 5 6 3.3170 -0.1613 -2.3424 6 1 3.8695 0.2380 -3.1801 7 6 2.8301 -1.4645 -2.3875 8 7 1.9998 -1.8873 -1.4628 9 14 3.3582 -2.6118 -3.7637 10 1 4.5812 -3.3474 -3.3530 11 1 2.2689 -3.5810 -4.0456 12 1 3.6443 -1.8193 -4.9865 13 6 3.3270 1.9398 -1.2884 14 8 3.6394 2.4633 -2.3406 15 6 3.2009 2.7581 -0.0653 16 6 3.9054 2.4441 1.0903 17 6 3.7552 3.2496 2.2278 18 6 4.5124 2.9031 3.4547 19 6 5.3519 1.7904 3.4681 20 6 6.0578 1.4755 4.6113 21 6 5.9259 2.2560 5.7458 22 6 5.0898 3.3581 5.7402 23 6 4.3830 3.6856 4.6011 24 7 2.9644 4.3025 2.2452 25 6 2.2515 4.6775 1.1820 26 6 1.4150 5.8082 1.2303 27 6 0.6994 6.1656 0.1291 28 6 0.7792 5.4294 -1.0508 29 6 1.5744 4.3246 -1.1325 30 6 2.3282 3.9321 -0.0214 31 1 2.9719 -1.0247 0.0662 32 1 2.9711 0.5709 0.8550 33 1 1.6602 -2.7953 -1.4943 34 1 4.5634 1.5879 1.1118 35 1 5.4522 1.1778 2.5842 36 1 6.7120 0.6162 4.6213 37 1 6.4774 2.0036 6.6394 38 1 4.9904 3.9637 6.6289 39 1 3.7310 4.5465 4.5978 40 1 1.3406 6.3894 2.1376 41 1 0.0584 7.0339 0.1711 42 1 0.2010 5.7350 -1.9103 43 1 1.6259 3.7590 -2.0512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000549791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = 99.263176 kcal Electronic energy + Delta-G solvation = -30578.936312 eV Core-core repulsion = 26554.955069 eV Total energy + Delta-G solvation = -4023.981242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.74312 -39.13119 -38.73605 -36.78210 -35.92310 -34.45454 -33.17057 -32.16049 -31.89384 -31.03722 -29.85971 -29.02346 -27.63400 -25.81073 -24.33183 -23.84314 -22.37205 -22.09011 -21.67191 -19.53408 -18.18727 -18.05363 -17.39799 -17.21323 -16.50419 -16.14170 -15.54727 -15.03431 -14.90439 -14.65274 -14.50329 -14.38903 -14.10225 -13.82884 -13.67660 -13.55860 -13.38648 -13.11061 -12.90648 -12.86011 -12.67731 -12.01088 -11.77364 -11.60340 -11.53903 -11.44477 -11.34063 -11.31124 -11.15240 -11.00155 -10.63457 -10.56680 -10.51957 -10.04561 -9.61963 -9.47082 -9.33671 -8.98336 -8.78744 -8.38469 -8.24496 -7.85832 -6.68897 -4.21133 0.24334 0.79914 1.37630 1.51895 2.03940 2.95207 3.06031 3.09637 3.14115 3.35804 3.66491 3.82650 3.93655 4.02416 4.07025 4.34235 4.39821 4.61577 4.76131 4.86963 4.88885 4.95111 4.98576 5.05919 5.08878 5.23422 5.25893 5.34687 5.40845 5.46937 5.52400 5.66308 5.78203 5.82552 5.96333 6.01125 6.08197 6.15097 6.22631 6.38156 6.43397 6.47399 6.55088 6.55583 6.65543 6.73114 6.90986 7.01044 7.22527 7.60272 8.04959 8.05263 8.71780 8.74632 8.92179 9.45464 10.30800 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004155 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.278013 B = 6737.689954 C = 8995.083513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.252 3.748 3 C 0.207 3.793 4 N -0.421 5.421 5 C -0.302 4.302 6 H 0.116 0.884 7 C 0.031 3.969 8 N -0.877 5.877 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.477 3.523 14 O -0.562 6.562 15 C -0.019 4.019 16 C -0.162 4.162 17 C 0.205 3.795 18 C -0.047 4.047 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.078 4.078 24 N -0.476 5.476 25 C 0.137 3.863 26 C -0.103 4.103 27 C -0.099 4.099 28 C -0.127 4.127 29 C -0.073 4.073 30 C -0.079 4.079 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.279 0.721 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 7.596 11.855 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.066 4.066 3 C 0.080 3.920 4 N -0.139 5.139 5 C -0.429 4.429 6 H 0.133 0.867 7 C -0.173 4.173 8 N -0.516 5.516 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.266 3.734 14 O -0.446 6.446 15 C -0.031 4.031 16 C -0.183 4.183 17 C 0.053 3.947 18 C -0.048 4.048 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.097 4.097 24 N -0.185 5.185 25 C 0.016 3.984 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.145 4.145 29 C -0.091 4.091 30 C -0.081 4.081 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.714 8.219 12.011 15.020 hybrid contribution 0.520 -1.300 -1.387 1.971 sum 4.235 6.920 10.624 13.367 Atomic orbital electron populations 1.80890 1.13532 1.11563 1.09551 1.29082 0.95186 0.90597 0.91709 1.19295 0.82134 1.03349 0.87184 1.43592 1.54537 1.04729 1.10998 1.19954 1.32638 0.93240 0.97031 0.86666 1.25448 0.94843 0.98221 0.98759 1.69687 1.28568 1.19291 1.34092 0.85668 0.78259 0.79162 0.80263 1.19788 1.20712 1.19077 1.17612 0.86631 0.81782 0.87361 1.90687 1.53093 1.70801 1.30025 1.21759 0.93477 0.93533 0.94307 1.22261 1.02075 1.01724 0.92216 1.19610 0.92684 0.90268 0.92106 1.18578 0.97626 0.96363 0.92239 1.21359 0.95435 0.95983 0.98852 1.21068 0.99987 1.00111 0.92960 1.21261 0.98358 0.95219 0.98221 1.21128 0.97595 0.97795 0.98223 1.21336 0.97805 0.99009 0.91544 1.67414 1.06999 1.15160 1.28904 1.18616 0.96123 0.95403 0.88256 1.20695 0.96500 0.95690 0.99247 1.20863 0.98635 0.99559 0.92776 1.20946 0.99629 0.95735 0.98225 1.21152 0.93756 0.96184 0.98019 1.19649 0.97923 0.95280 0.95279 0.83721 0.89926 0.90988 0.83496 0.85080 0.85591 0.86119 0.85942 0.84759 0.84889 0.85512 0.85590 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.66 18.54 42.15 0.78 -10.87 16 2 C 0.25 5.77 13.52 -20.76 -0.28 5.49 16 3 C 0.21 4.17 5.01 -6.83 -0.03 4.14 16 4 N -0.42 -9.55 2.57 -119.08 -0.31 -9.85 16 5 C -0.30 -7.34 9.44 -15.05 -0.14 -7.48 16 6 H 0.12 2.93 7.29 -52.49 -0.38 2.54 16 7 C 0.03 0.72 5.22 -17.44 -0.09 0.63 16 8 N -0.88 -20.72 8.48 55.51 0.47 -20.25 16 9 Si 0.94 18.70 29.57 -169.99 -5.03 13.67 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 C 0.48 10.80 6.50 -12.40 -0.08 10.72 16 14 O -0.56 -14.37 15.67 5.27 0.08 -14.28 16 15 C -0.02 -0.38 5.13 -102.51 -0.53 -0.90 16 16 C -0.16 -2.67 7.00 -38.59 -0.27 -2.94 16 17 C 0.20 3.23 6.73 -83.06 -0.56 2.68 16 18 C -0.05 -0.63 5.88 -104.90 -0.62 -1.25 16 19 C -0.10 -1.12 9.40 -39.24 -0.37 -1.49 16 20 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 21 C -0.11 -1.03 10.04 -39.51 -0.40 -1.43 16 22 C -0.13 -1.28 10.03 -39.63 -0.40 -1.68 16 23 C -0.08 -0.94 9.56 -39.24 -0.37 -1.32 16 24 N -0.48 -7.90 9.23 -7.64 -0.07 -7.97 16 25 C 0.14 2.36 6.62 -84.90 -0.56 1.80 16 26 C -0.10 -1.46 9.99 -39.41 -0.39 -1.86 16 27 C -0.10 -1.28 9.94 -39.95 -0.40 -1.67 16 28 C -0.13 -1.87 9.97 -39.86 -0.40 -2.27 16 29 C -0.07 -1.33 9.34 -39.64 -0.37 -1.70 16 30 C -0.08 -1.49 5.90 -104.67 -0.62 -2.11 16 31 H 0.15 2.90 6.14 -51.93 -0.32 2.59 16 32 H 0.08 1.41 4.44 -51.93 -0.23 1.17 16 33 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.15 2.07 5.51 -52.48 -0.29 1.78 16 35 H 0.13 1.35 6.10 -52.48 -0.32 1.03 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.13 1.61 7.50 -52.49 -0.39 1.22 16 40 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 43 H 0.14 2.77 6.71 -52.48 -0.35 2.42 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -30.37 370.96 -9.71 -40.08 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.96 Total: 8.13 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -7.27 Total: -4.24 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.88 Total: -48.95 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.37 -9.71 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000549791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.345 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds