Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46980 * 116.30410 * 3 2 1 5 5 C 1.36660 * 119.99954 * 270.36619 * 4 3 2 6 6 H 1.08001 * 119.99646 * 193.09686 * 5 4 3 7 7 C 1.39193 * 120.00261 * 13.09084 * 5 4 3 8 8 N 1.31272 * 119.99791 * 9.82309 * 7 5 4 9 9 Si 1.86791 * 120.00194 * 189.82459 * 7 5 4 10 10 H 1.48505 * 109.47098 * 90.00232 * 9 7 5 11 11 H 1.48500 * 109.47359 * 210.00190 * 9 7 5 12 12 H 1.48502 * 109.47267 * 330.00123 * 9 7 5 13 13 C 1.34772 * 120.00266 * 90.36192 * 4 3 2 14 14 O 1.21607 * 120.00513 * 185.28589 * 13 4 3 15 15 C 1.47696 * 119.99822 * 5.29005 * 13 4 3 16 16 C 1.38937 * 121.34991 * 54.76958 * 15 13 4 17 17 C 1.40188 * 119.38878 * 179.97438 * 16 15 13 18 18 C 1.48283 * 118.84535 * 179.97438 * 17 16 15 19 19 C 1.39403 * 120.12868 * 359.72708 * 18 17 16 20 20 C 1.37998 * 119.87314 * 179.76979 * 19 18 17 21 21 C 1.38333 * 120.12587 * 0.48028 * 20 19 18 22 22 C 1.38330 * 120.25613 * 359.79675 * 21 20 19 23 23 C 1.38006 * 120.12831 * 359.94784 * 22 21 20 24 24 N 1.31695 * 122.30765 * 0.02562 * 17 16 15 25 25 C 1.33390 * 122.35271 * 359.95370 * 24 17 16 26 26 C 1.40725 * 121.07717 * 180.02562 * 25 24 17 27 27 C 1.36106 * 119.72065 * 180.02562 * 26 25 24 28 28 C 1.39307 * 121.08922 * 0.02562 * 27 26 25 29 29 C 1.36365 * 120.81588 * 0.27379 * 28 27 26 30 30 C 1.39887 * 119.60318 * 359.45358 * 29 28 27 31 31 H 1.09004 * 109.47461 * 356.30655 * 3 2 1 32 32 H 1.08997 * 109.47020 * 236.30444 * 3 2 1 33 33 H 0.96995 * 120.00209 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.30688 * 0.02562 * 16 15 13 35 35 H 1.08005 * 120.05730 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.93589 * 180.27659 * 20 19 18 37 37 H 1.08002 * 119.86844 * 179.76849 * 21 20 19 38 38 H 1.08001 * 119.93931 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.06307 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.14266 * 359.97438 * 26 25 24 41 41 H 1.08005 * 119.45179 * 179.97438 * 27 26 25 42 42 H 1.07998 * 119.58915 * 180.02562 * 28 27 26 43 43 H 1.08008 * 120.19859 * 179.76501 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6129 -1.2382 5 6 3.3170 -0.1613 -2.3424 6 1 3.8695 0.2380 -3.1801 7 6 2.8301 -1.4645 -2.3875 8 7 1.9998 -1.8873 -1.4628 9 14 3.3582 -2.6118 -3.7637 10 1 4.5812 -3.3474 -3.3530 11 1 2.2689 -3.5810 -4.0456 12 1 3.6443 -1.8193 -4.9865 13 6 3.3270 1.9398 -1.2884 14 8 3.6394 2.4633 -2.3406 15 6 3.2009 2.7581 -0.0653 16 6 3.9054 2.4441 1.0903 17 6 3.7552 3.2496 2.2278 18 6 4.5124 2.9031 3.4547 19 6 5.3519 1.7904 3.4681 20 6 6.0578 1.4755 4.6113 21 6 5.9259 2.2560 5.7458 22 6 5.0898 3.3581 5.7402 23 6 4.3830 3.6856 4.6011 24 7 2.9644 4.3025 2.2452 25 6 2.2515 4.6775 1.1820 26 6 1.4150 5.8082 1.2303 27 6 0.6994 6.1656 0.1291 28 6 0.7792 5.4294 -1.0508 29 6 1.5744 4.3246 -1.1325 30 6 2.3282 3.9321 -0.0214 31 1 2.9719 -1.0247 0.0662 32 1 2.9711 0.5709 0.8550 33 1 1.6602 -2.7953 -1.4943 34 1 4.5634 1.5879 1.1118 35 1 5.4522 1.1778 2.5842 36 1 6.7120 0.6162 4.6213 37 1 6.4774 2.0036 6.6394 38 1 4.9904 3.9637 6.6289 39 1 3.7310 4.5465 4.5978 40 1 1.3406 6.3894 2.1376 41 1 0.0584 7.0339 0.1711 42 1 0.2010 5.7350 -1.9103 43 1 1.6259 3.7590 -2.0512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000549791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = 84.589897 kcal Electronic energy + Delta-G solvation = -30579.572593 eV Core-core repulsion = 26554.955069 eV Total energy + Delta-G solvation = -4024.617524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.05730 -40.50141 -39.92232 -37.95197 -37.74273 -36.31627 -34.63255 -33.60912 -33.15824 -31.89085 -31.08740 -30.08993 -29.37073 -27.45070 -25.64014 -25.01962 -23.73246 -23.02838 -22.68456 -21.01514 -19.99962 -19.29004 -18.69251 -18.53941 -17.79103 -17.73691 -16.90963 -16.31582 -16.08136 -16.03195 -15.79595 -15.59040 -15.40314 -15.18401 -15.09324 -14.85858 -14.77067 -14.34999 -14.25717 -13.99056 -13.81655 -13.73536 -13.51975 -13.19583 -12.99973 -12.73225 -12.64556 -12.47850 -12.42052 -12.28521 -12.16041 -12.08432 -11.86604 -11.47906 -11.26204 -11.07655 -10.40498 -10.34446 -10.17473 -9.78112 -9.47232 -9.00470 -8.48359 -6.10142 -0.97915 -0.42242 0.53308 0.58371 0.71888 1.33715 1.44319 1.54226 1.64743 1.86246 2.00375 2.17250 2.26360 2.77049 2.87581 2.91746 2.95866 3.17174 3.41972 3.47996 3.57573 3.64501 3.80856 4.03371 4.07875 4.10992 4.21902 4.28810 4.31776 4.37060 4.43971 4.55007 4.64063 4.71391 4.77220 4.87988 4.96330 4.98482 5.10341 5.23983 5.30239 5.34530 5.39622 5.43310 5.63818 5.65761 5.67502 5.80744 5.85528 6.12908 6.23813 6.78553 6.88043 6.91910 7.12155 7.66449 8.49418 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004155 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.278013 B = 6737.689954 C = 8995.083513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.261 3.739 3 C 0.214 3.786 4 N -0.429 5.429 5 C -0.334 4.334 6 H 0.093 0.907 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.999 3.001 10 H -0.255 1.255 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.480 3.520 14 O -0.603 6.603 15 C -0.052 4.052 16 C -0.148 4.148 17 C 0.201 3.799 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.104 4.104 22 C -0.130 4.130 23 C -0.089 4.089 24 N -0.474 5.474 25 C 0.118 3.882 26 C -0.099 4.099 27 C -0.088 4.088 28 C -0.112 4.112 29 C -0.115 4.115 30 C -0.101 4.101 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.281 0.719 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.152 0.848 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 8.282 14.788 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.056 4.056 3 C 0.088 3.912 4 N -0.146 5.146 5 C -0.461 4.461 6 H 0.111 0.889 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.822 3.178 10 H -0.179 1.179 11 H -0.208 1.208 12 H -0.201 1.201 13 C 0.270 3.730 14 O -0.489 6.489 15 C -0.063 4.063 16 C -0.169 4.169 17 C 0.049 3.951 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.122 4.122 22 C -0.148 4.148 23 C -0.108 4.108 24 N -0.183 5.183 25 C -0.003 4.003 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.129 4.129 29 C -0.134 4.134 30 C -0.104 4.104 31 H 0.167 0.833 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.147 0.853 40 H 0.180 0.820 41 H 0.192 0.808 42 H 0.170 0.830 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.346 8.903 14.971 17.952 hybrid contribution 0.345 -1.372 -2.167 2.587 sum 4.691 7.531 12.804 15.578 Atomic orbital electron populations 1.80864 1.14590 1.12832 1.10680 1.29623 0.95777 0.89514 0.90692 1.19472 0.80559 1.03941 0.87249 1.43658 1.54670 1.04877 1.11428 1.19872 1.34329 0.94337 0.97530 0.88874 1.26073 0.94304 0.98622 1.00513 1.69759 1.28741 1.19524 1.35025 0.84819 0.78369 0.77162 0.77417 1.17917 1.20769 1.20123 1.18097 0.85038 0.81877 0.87975 1.90629 1.54529 1.71688 1.32052 1.21531 0.96260 0.94554 0.93999 1.22495 1.00976 1.02055 0.91364 1.20014 0.92516 0.89717 0.92818 1.18600 0.99067 0.98088 0.91714 1.21541 0.95422 0.95562 1.00010 1.21419 0.99614 1.00844 0.92371 1.21693 0.97357 0.94132 0.99042 1.21440 0.96866 0.98251 0.98210 1.21415 0.98428 0.98923 0.92045 1.67507 1.06945 1.15337 1.28482 1.19035 0.97156 0.96407 0.87697 1.21133 0.95246 0.94553 1.00844 1.21334 0.98156 1.00130 0.91117 1.21338 0.97689 0.93920 0.99986 1.21043 0.96806 0.98407 0.97099 1.19845 0.98506 0.95619 0.96394 0.83318 0.86832 0.90835 0.81570 0.84557 0.83079 0.82974 0.83439 0.85309 0.81992 0.80762 0.83003 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.57 18.54 20.01 0.37 -25.20 16 2 C 0.26 12.26 13.52 89.44 1.21 13.47 16 3 C 0.21 8.82 5.01 84.57 0.42 9.24 16 4 N -0.43 -20.42 2.57 -648.91 -1.67 -22.09 16 5 C -0.33 -17.03 9.44 84.17 0.79 -16.24 16 6 H 0.09 5.07 7.29 -2.91 -0.02 5.05 16 7 C 0.01 0.34 5.22 85.01 0.44 0.78 16 8 N -0.89 -42.66 8.48 21.70 0.18 -42.48 16 9 Si 1.00 38.85 29.57 68.60 2.03 40.88 16 10 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 11 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 13 C 0.48 23.14 6.50 86.74 0.56 23.70 16 14 O -0.60 -33.25 15.67 -4.05 -0.06 -33.31 16 15 C -0.05 -2.15 5.13 -18.50 -0.09 -2.24 16 16 C -0.15 -4.99 7.00 22.91 0.16 -4.83 16 17 C 0.20 6.33 6.73 42.31 0.28 6.62 16 18 C -0.07 -1.90 5.88 -20.05 -0.12 -2.01 16 19 C -0.11 -2.26 9.40 22.49 0.21 -2.05 16 20 C -0.12 -2.04 10.03 22.24 0.22 -1.82 16 21 C -0.10 -1.51 10.04 22.31 0.22 -1.29 16 22 C -0.13 -2.17 10.03 22.24 0.22 -1.95 16 23 C -0.09 -2.01 9.56 22.49 0.21 -1.79 16 24 N -0.47 -15.56 9.23 -178.07 -1.64 -17.20 16 25 C 0.12 4.03 6.62 40.39 0.27 4.30 16 26 C -0.10 -2.62 9.99 22.38 0.22 -2.40 16 27 C -0.09 -2.03 9.94 22.03 0.22 -1.81 16 28 C -0.11 -3.20 9.97 22.09 0.22 -2.98 16 29 C -0.11 -4.42 9.34 22.23 0.21 -4.22 16 30 C -0.10 -3.99 5.90 -19.90 -0.12 -4.11 16 31 H 0.15 6.04 6.14 -2.38 -0.01 6.03 16 32 H 0.11 3.91 4.44 -2.39 -0.01 3.90 16 33 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 34 H 0.17 4.70 5.51 -2.91 -0.02 4.68 16 35 H 0.14 2.62 6.10 -2.91 -0.02 2.60 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.13 2.95 7.50 -2.91 -0.02 2.93 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.10 4.61 6.71 -2.91 -0.02 4.59 16 Total: -1.00 -70.70 370.96 6.08 -64.62 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.09 Total: 26.39 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.78 Total: 8.39 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -2.76 Total: -106.97 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.06 Total: -33.31 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -70.70 6.08 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000549791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.211 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds