Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30191 * 1 3 3 Si 1.86792 * 120.00546 * 2 1 4 4 H 1.48497 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47203 * 300.00261 * 3 2 1 6 6 H 1.48497 * 109.46987 * 59.99721 * 3 2 1 7 7 C 1.40936 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.46491 * 119.99698 * 0.02562 * 7 2 1 10 10 O 1.21834 * 120.00386 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99897 * 180.02562 * 9 7 2 12 12 N 1.28992 * 120.00073 * 180.02562 * 11 9 7 13 13 C 1.31688 * 120.00159 * 179.97438 * 12 11 9 14 14 C 1.41699 * 120.00324 * 179.97438 * 13 12 11 15 15 C 1.40792 * 120.14500 * 359.97438 * 14 13 12 16 16 C 1.36379 * 119.83730 * 179.97438 * 15 14 13 17 17 Br 1.89101 * 119.93172 * 180.02562 * 16 15 14 18 18 C 1.39652 * 120.13668 * 0.02562 * 16 15 14 19 19 O 1.35502 * 119.85318 * 179.97438 * 18 16 15 20 20 C 1.39488 * 120.29372 * 0.24848 * 18 16 15 21 21 N 1.48017 * 119.91500 * 179.74868 * 20 18 16 22 22 O 1.31707 * 119.99575 * 179.97438 * 21 20 18 23 23 O 1.31696 * 120.00387 * 0.02562 * 21 20 18 24 24 C 1.36358 * 120.16223 * 359.48603 * 20 18 16 25 25 H 0.97000 * 119.99700 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99818 * 359.97438 * 11 9 7 27 27 H 1.07999 * 119.99539 * 359.97438 * 13 12 11 28 28 H 1.08009 * 120.08363 * 0.02562 * 15 14 13 29 29 H 0.96700 * 114.00407 * 89.99586 * 19 18 16 30 30 H 1.07994 * 120.07236 * 180.25334 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3019 0.0000 0.0000 3 14 2.2360 1.6176 0.0000 4 1 3.6960 1.3462 0.0006 5 1 1.8773 2.3964 -1.2125 6 1 1.8773 2.3963 1.2124 7 6 2.0065 -1.2206 -0.0005 8 1 3.0865 -1.2206 -0.0010 9 6 1.2740 -2.4892 -0.0017 10 8 0.0556 -2.4891 -0.0017 11 7 1.9478 -3.6565 -0.0017 12 7 1.3027 -4.7735 -0.0032 13 6 1.9611 -5.9140 -0.0037 14 6 1.2525 -7.1412 -0.0048 15 6 -0.1554 -7.1447 -0.0048 16 6 -0.8310 -8.3294 -0.0064 17 35 -2.7220 -8.3372 -0.0071 18 6 -0.1292 -9.5367 -0.0075 19 8 -0.8062 -10.7105 -0.0085 20 6 1.2657 -9.5398 -0.0017 21 7 2.0011 -10.8243 0.0027 22 8 3.3181 -10.8291 0.0077 23 8 1.3385 -11.9625 0.0007 24 6 1.9534 -8.3623 -0.0055 25 1 -0.4850 0.8401 -0.0004 26 1 2.9178 -3.6565 -0.0013 27 1 3.0411 -5.9140 -0.0033 28 1 -0.6991 -6.2114 -0.0044 29 1 -1.0028 -11.0504 -0.8922 30 1 3.0334 -8.3664 -0.0052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -2.758675 kcal Electronic energy + Delta-G solvation = -21914.411205 eV Core-core repulsion = 17954.337224 eV Total energy + Delta-G solvation = -3960.073981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 356.984 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91850 -40.78309 -39.57971 -38.68322 -37.48540 -35.53308 -34.86158 -34.12983 -33.76519 -31.31672 -30.48202 -28.49759 -27.74409 -25.54653 -23.75772 -22.72494 -21.91316 -20.30563 -19.95879 -19.36221 -18.87654 -18.29089 -17.72464 -17.48008 -16.75224 -16.57936 -16.28579 -15.92135 -15.75473 -15.34321 -14.80446 -14.45966 -14.03673 -13.55990 -13.39178 -13.34696 -12.85933 -12.80530 -12.68550 -12.53756 -12.35376 -12.01716 -11.97889 -11.88123 -11.52423 -11.21317 -11.11618 -10.97026 -10.38387 -10.19842 -8.89982 -8.50705 -7.07513 -1.91886 -0.86694 -0.24193 -0.21063 0.28822 0.95244 1.41026 1.41221 1.59459 2.06801 2.06928 2.37563 2.40871 2.45606 3.19643 3.38329 3.43821 3.48775 3.54879 3.86617 4.16163 4.25458 4.40362 4.56903 4.72845 4.99071 5.03057 5.17079 5.51112 5.52212 5.95219 6.28346 6.63481 6.72261 7.35043 8.30873 8.45574 Molecular weight = 356.98amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.002699 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.687364 B =10373.007668 C =12298.232452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.031 3.969 3 Si 1.006 2.994 4 H -0.241 1.241 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.105 0.895 9 C 0.528 3.472 10 O -0.590 6.590 11 N -0.517 5.517 12 N -0.218 5.218 13 C -0.015 4.015 14 C -0.004 4.004 15 C -0.011 4.011 16 C -0.124 4.124 17 Br -0.001 7.001 18 C 0.211 3.789 19 O -0.464 6.464 20 C -0.029 4.029 21 N -0.010 5.010 22 O -0.194 6.194 23 O -0.159 6.159 24 C -0.006 4.006 25 H 0.284 0.716 26 H 0.389 0.611 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.425 0.575 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -15.538 -1.849 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.188 4.188 3 Si 0.824 3.176 4 H -0.164 1.164 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.123 0.877 9 C 0.337 3.663 10 O -0.472 6.472 11 N -0.263 5.263 12 N -0.038 5.038 13 C -0.215 4.215 14 C -0.008 4.008 15 C -0.034 4.034 16 C -0.205 4.205 17 Br 0.085 6.915 18 C 0.159 3.841 19 O -0.280 6.280 20 C -0.117 4.117 21 N 0.467 4.533 22 O -0.382 6.382 23 O -0.356 6.356 24 C -0.029 4.029 25 H 0.094 0.906 26 H 0.229 0.771 27 H 0.174 0.826 28 H 0.166 0.834 29 H 0.290 0.710 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.324 -14.192 -1.276 14.311 hybrid contribution 1.735 -0.043 -0.430 1.788 sum 0.411 -14.235 -1.706 14.343 Atomic orbital electron populations 1.69915 1.09976 1.30152 1.33057 1.27167 0.95534 1.05117 0.90946 0.84831 0.79539 0.74551 0.78659 1.16380 1.19268 1.19326 1.21628 0.95332 0.88210 1.53746 0.87717 1.19115 0.87338 0.82181 0.77690 1.90655 1.15706 1.86387 1.54439 1.44745 1.09219 1.02832 1.69472 1.71471 1.33203 0.94196 1.04950 1.22871 0.98761 0.88421 1.11479 1.17348 0.91371 0.91453 1.00628 1.21726 0.94451 0.97767 0.89437 1.21881 0.93511 0.93814 1.11257 1.96842 0.98045 1.99121 1.97523 1.17993 0.86408 0.86663 0.93058 1.84714 1.74631 1.32880 1.35765 1.20281 0.90465 0.82378 1.18616 1.50344 1.02997 1.04056 0.95889 1.96287 0.88809 1.96197 1.56867 1.96290 1.68113 1.16785 1.54423 1.21147 1.03413 0.87268 0.91061 0.90577 0.77118 0.82639 0.83421 0.70979 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.84 11.83 21.99 0.26 -44.58 16 2 C 0.03 1.54 5.52 85.60 0.47 2.02 16 3 Si 1.01 36.03 29.57 68.60 2.03 38.06 16 4 H -0.24 -7.80 7.11 99.48 0.71 -7.10 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 6 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.55 -27.69 9.59 25.08 0.24 -27.45 16 8 H 0.10 4.49 7.86 -2.91 -0.02 4.46 16 9 C 0.53 27.95 7.84 86.39 0.68 28.62 16 10 O -0.59 -37.10 15.36 -4.78 -0.07 -37.17 16 11 N -0.52 -21.00 5.88 -176.40 -1.04 -22.04 16 12 N -0.22 -8.18 9.56 -55.34 -0.53 -8.71 16 13 C -0.01 -0.38 10.40 85.57 0.89 0.51 16 14 C 0.00 -0.09 5.75 -21.17 -0.12 -0.21 16 15 C -0.01 -0.27 9.22 22.46 0.21 -0.07 16 16 C -0.12 -2.75 6.20 22.18 0.14 -2.61 16 17 Br 0.00 -0.02 33.14 -20.37 -0.68 -0.69 16 18 C 0.21 4.32 6.72 22.91 0.15 4.48 16 19 O -0.46 -8.35 10.72 -66.84 -0.72 -9.06 16 20 C -0.03 -0.62 6.86 36.24 0.25 -0.37 16 21 N -0.01 -0.25 4.98 -46.79 -0.23 -0.48 16 22 O -0.19 -5.12 19.12 3.50 0.07 -5.05 16 23 O -0.16 -4.17 17.88 10.85 0.19 -3.97 16 24 C -0.01 -0.12 9.27 22.46 0.21 0.09 16 25 H 0.28 14.18 8.28 -92.71 -0.77 13.41 16 26 H 0.39 12.35 8.43 -219.72 -1.85 10.50 16 27 H 0.16 2.78 7.95 -2.91 -0.02 2.76 16 28 H 0.15 4.51 7.47 -2.91 -0.02 4.48 16 29 H 0.43 4.04 9.06 -74.06 -0.67 3.37 16 30 H 0.19 2.62 7.54 -2.91 -0.02 2.60 16 Total: -1.00 -72.63 313.32 1.14 -71.49 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -1.26 Total: 17.19 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 3.11 Total: 5.01 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.54 Total: -75.81 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -0.53 Total: -55.26 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.68 Total: -0.69 kcal Total: -72.63 1.14 -71.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.735 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds