Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47314 * 2 1 4 4 C 1.35909 * 117.00639 * 179.97438 * 3 2 1 5 5 C 1.38817 * 119.92892 * 179.97438 * 4 3 2 6 6 C 1.37908 * 120.07683 * 180.02562 * 5 4 3 7 7 C 1.39451 * 119.92553 * 359.97438 * 6 5 4 8 8 C 1.48230 * 120.07738 * 179.97438 * 7 6 5 9 9 C 1.33388 * 122.80486 * 295.48949 * 8 7 6 10 10 C 1.50705 * 124.41833 * 359.70472 * 9 8 7 11 11 S 1.75302 * 111.16816 * 180.02562 * 9 8 7 12 12 C 1.75867 * 92.34411 * 359.73398 * 11 9 8 13 13 N 1.35050 * 130.57656 * 179.97438 * 12 11 9 14 14 C 1.29989 * 121.73699 * 180.02562 * 13 12 11 15 15 N 1.36108 * 121.78442 * 0.02562 * 14 13 12 16 16 C 1.37171 * 119.85879 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99782 * 150.95697 * 16 15 14 18 18 C 1.39012 * 120.00420 * 330.94854 * 16 15 14 19 19 N 1.31298 * 119.99760 * 342.66091 * 18 16 15 20 20 Si 1.86794 * 120.00037 * 162.65553 * 18 16 15 21 21 H 1.48490 * 109.47390 * 90.00606 * 20 18 16 22 22 H 1.48510 * 109.46874 * 210.00367 * 20 18 16 23 23 H 1.48499 * 109.47309 * 329.99964 * 20 18 16 24 24 C 1.34736 * 120.27851 * 359.97438 * 15 14 13 25 25 O 1.21878 * 120.61986 * 180.02562 * 24 15 14 26 26 C 1.39050 * 109.88915 * 359.97438 * 12 11 9 27 27 C 1.39452 * 119.84866 * 0.25716 * 7 6 5 28 28 C 1.37916 * 119.92145 * 359.46725 * 27 7 6 29 29 H 1.08993 * 109.47287 * 59.99946 * 1 2 3 30 30 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47282 * 299.99742 * 1 2 3 32 32 H 1.08998 * 109.47606 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47339 * 119.99887 * 2 1 3 34 34 H 1.07999 * 119.96118 * 359.97396 * 5 4 3 35 35 H 1.08003 * 120.04269 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47082 * 180.31673 * 10 9 8 37 37 H 1.08996 * 109.47247 * 300.32575 * 10 9 8 38 38 H 1.09010 * 109.46582 * 60.32111 * 10 9 8 39 39 H 1.08002 * 119.10765 * 180.02562 * 14 13 12 40 40 H 0.96994 * 119.99542 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03452 * 179.74783 * 27 7 6 42 42 H 1.08003 * 119.95752 * 180.27989 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 3.8826 2.8089 0.0000 6 6 5.2493 2.9932 0.0000 7 6 6.1003 1.8885 0.0011 8 6 7.5698 2.0827 0.0006 9 6 8.2228 2.6546 -1.0123 10 6 7.5665 3.1638 -2.2697 11 16 9.9450 2.7284 -0.6939 12 6 9.7608 1.9596 0.8771 13 7 10.6819 1.6367 1.8105 14 6 10.3501 1.0628 2.9286 15 7 9.0567 0.7551 3.2204 16 6 8.7511 0.1490 4.4124 17 1 7.7861 0.3120 4.8693 18 6 9.6833 -0.6751 5.0323 19 7 10.6985 -1.1490 4.3477 20 14 9.4916 -1.1083 6.8392 21 1 8.6810 -2.3457 6.9683 22 1 10.8316 -1.3294 7.4400 23 1 8.8101 0.0060 7.5457 24 6 8.0754 1.0434 2.3433 25 8 6.9151 0.7710 2.5984 26 6 8.4199 1.6748 1.1100 27 6 5.5656 0.6005 -0.0033 28 6 4.1979 0.4234 0.0025 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2230 3.6641 -0.0012 35 1 5.6602 3.9921 0.0001 36 1 8.3254 3.5776 -2.9337 37 1 7.0543 2.3423 -2.7705 38 1 6.8449 3.9399 -2.0142 39 1 11.1216 0.8237 3.6456 40 1 11.3491 -1.7238 4.7803 41 1 6.2219 -0.2572 -0.0066 42 1 3.7832 -0.5738 0.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001945113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -0.097571 kcal Electronic energy + Delta-G solvation = -28633.893301 eV Core-core repulsion = 24670.640221 eV Total energy + Delta-G solvation = -3963.253080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 356.098 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.58346 -39.87061 -37.88438 -36.31949 -35.91986 -34.26147 -32.02020 -31.90807 -30.73789 -30.29641 -29.27300 -26.46780 -26.01828 -24.05281 -23.42071 -22.82992 -21.82911 -21.42814 -19.53525 -18.61365 -18.08399 -17.17243 -16.76020 -16.08148 -15.85301 -15.67562 -15.47087 -15.07035 -14.72784 -14.37767 -14.17694 -13.54653 -13.36957 -13.34268 -13.32456 -13.12910 -12.96379 -12.68417 -12.42846 -12.20958 -12.09920 -11.86166 -11.81456 -11.68931 -11.65064 -11.50784 -11.39656 -10.92621 -10.71887 -10.62130 -10.51101 -10.35101 -9.72508 -9.10254 -8.93761 -8.80634 -8.65456 -7.98759 -7.60972 -7.25586 -6.99515 -4.72374 1.22093 1.63631 1.72417 1.88567 2.47208 2.52154 2.88808 2.92811 2.99430 3.04240 3.27477 3.61217 4.08311 4.16897 4.26315 4.81596 4.85578 4.92552 5.08636 5.16445 5.18062 5.20399 5.23411 5.37109 5.38558 5.58181 5.64524 5.66250 5.71989 5.78996 5.86900 5.88479 5.93286 6.08802 6.17792 6.31527 6.44161 6.57172 6.63713 6.68061 6.87495 6.88604 7.01487 7.02527 7.40760 7.60142 7.81999 8.12655 8.47371 8.95411 9.24973 9.90315 Molecular weight = 356.10amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.003873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.943672 B = 7227.537191 C =10068.566816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.122 3.878 5 C -0.155 4.155 6 C -0.067 4.067 7 C -0.041 4.041 8 C 0.015 3.985 9 C -0.216 4.216 10 C -0.067 4.067 11 S 0.120 5.880 12 C 0.099 3.901 13 N -0.546 5.546 14 C 0.364 3.636 15 N -0.339 5.339 16 C -0.330 4.330 17 H 0.122 0.878 18 C 0.047 3.953 19 N -0.840 5.840 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.259 1.259 24 C 0.513 3.487 25 O -0.547 6.547 26 C -0.264 4.264 27 C -0.033 4.033 28 C -0.205 4.205 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.206 0.794 40 H 0.291 0.709 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 3.420 -8.110 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.235 6.235 4 C 0.078 3.922 5 C -0.174 4.174 6 C -0.086 4.086 7 C -0.043 4.043 8 C 0.003 3.997 9 C -0.331 4.331 10 C -0.126 4.126 11 S 0.380 5.620 12 C -0.143 4.143 13 N -0.273 5.273 14 C 0.081 3.919 15 N -0.037 5.037 16 C -0.459 4.459 17 H 0.139 0.861 18 C -0.165 4.165 19 N -0.471 5.471 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.183 1.183 24 C 0.311 3.689 25 O -0.427 6.427 26 C -0.280 4.280 27 C -0.052 4.052 28 C -0.223 4.223 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.222 0.778 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.040 3.972 -8.944 12.056 hybrid contribution -1.582 -1.549 1.856 2.889 sum -8.622 2.423 -7.089 11.421 Atomic orbital electron populations 1.21761 0.93035 1.02636 1.03320 1.22732 0.95524 0.82413 1.01496 1.86012 1.19499 1.28909 1.89059 1.18946 0.81755 0.94174 0.97365 1.20169 0.94790 0.94460 1.07991 1.20877 0.91735 0.98214 0.97727 1.18186 0.90604 0.93040 1.02506 1.17756 0.91914 0.98203 0.91869 1.23689 0.96324 1.11735 1.01397 1.20177 0.99406 1.00775 0.92198 1.83470 1.04104 1.63419 1.10985 1.23485 0.91841 1.00122 0.98808 1.67940 1.33070 1.23683 1.02627 1.24933 0.86825 0.87562 0.92623 1.42747 1.07001 1.38614 1.15321 1.20217 1.04539 1.26584 0.94574 0.86080 1.25748 0.95107 0.93583 1.02030 1.69767 1.12791 1.27726 1.36853 0.85611 0.78670 0.79799 0.79068 1.19276 1.19653 1.18273 1.16775 0.86153 0.82581 0.83346 1.90758 1.17822 1.56527 1.77633 1.20409 0.92894 1.15475 0.99248 1.20836 0.93799 0.96521 0.94013 1.21044 0.94115 0.97669 1.09501 0.91694 0.90566 0.91595 0.92208 0.91989 0.85582 0.85651 0.91892 0.91245 0.91125 0.77803 0.89817 0.86296 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.88 16 2 C 0.05 0.59 5.46 37.15 0.20 0.80 16 3 O -0.32 -4.61 10.13 -19.45 -0.20 -4.81 16 4 C 0.12 1.96 6.69 -39.15 -0.26 1.69 16 5 C -0.16 -2.41 9.97 -39.49 -0.39 -2.81 16 6 C -0.07 -1.11 8.90 -39.25 -0.35 -1.46 16 7 C -0.04 -0.77 4.28 -104.89 -0.45 -1.22 16 8 C 0.01 0.30 5.36 -104.55 -0.56 -0.26 16 9 C -0.22 -3.68 6.42 -36.00 -0.23 -3.91 16 10 C -0.07 -0.86 9.50 36.01 0.34 -0.52 16 11 S 0.12 2.12 23.18 -107.50 -2.49 -0.38 16 12 C 0.10 2.20 7.68 -15.83 -0.12 2.08 16 13 N -0.55 -12.65 10.42 -12.55 -0.13 -12.78 16 14 C 0.36 8.67 10.29 -89.82 -0.92 7.74 16 15 N -0.34 -8.68 2.74 -65.32 -0.18 -8.86 16 16 C -0.33 -8.33 9.10 -14.88 -0.14 -8.47 16 17 H 0.12 3.12 7.58 -52.48 -0.40 2.72 16 18 C 0.05 1.07 5.00 -17.49 -0.09 0.98 16 19 N -0.84 -19.73 11.19 55.50 0.62 -19.11 16 20 Si 0.95 17.63 29.59 -169.99 -5.03 12.60 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 C 0.51 13.40 7.45 -14.53 -0.11 13.29 16 25 O -0.55 -15.16 14.92 5.03 0.08 -15.08 16 26 C -0.26 -6.19 6.07 -104.91 -0.64 -6.83 16 27 C -0.03 -0.62 8.64 -39.25 -0.34 -0.96 16 28 C -0.20 -3.38 9.02 -39.48 -0.36 -3.74 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 34 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.13 1.83 7.90 -52.48 -0.41 1.42 16 36 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.83 7.42 -51.92 -0.39 0.44 16 39 H 0.21 4.65 6.18 -52.49 -0.32 4.33 16 40 H 0.29 6.22 8.31 -40.82 -0.34 5.88 16 41 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.12 1.75 6.28 -52.48 -0.33 1.42 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -29.41 369.37 -10.53 -39.95 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.74 Total: 7.36 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.03 Total: -4.46 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.31 Total: -40.75 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.12 Total: -19.89 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.49 Total: -0.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.41 -10.53 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001945113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.848 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds