Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47314 * 2 1 4 4 C 1.35909 * 117.00639 * 179.97438 * 3 2 1 5 5 C 1.38817 * 119.92892 * 179.97438 * 4 3 2 6 6 C 1.37908 * 120.07683 * 180.02562 * 5 4 3 7 7 C 1.39451 * 119.92553 * 359.97438 * 6 5 4 8 8 C 1.48230 * 120.07738 * 179.97438 * 7 6 5 9 9 C 1.33388 * 122.80486 * 295.48949 * 8 7 6 10 10 C 1.50705 * 124.41833 * 359.70472 * 9 8 7 11 11 S 1.75302 * 111.16816 * 180.02562 * 9 8 7 12 12 C 1.75867 * 92.34411 * 359.73398 * 11 9 8 13 13 N 1.35050 * 130.57656 * 179.97438 * 12 11 9 14 14 C 1.29989 * 121.73699 * 180.02562 * 13 12 11 15 15 N 1.36108 * 121.78442 * 0.02562 * 14 13 12 16 16 C 1.37171 * 119.85879 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99782 * 150.95697 * 16 15 14 18 18 C 1.39012 * 120.00420 * 330.94854 * 16 15 14 19 19 N 1.31298 * 119.99760 * 342.66091 * 18 16 15 20 20 Si 1.86794 * 120.00037 * 162.65553 * 18 16 15 21 21 H 1.48490 * 109.47390 * 90.00606 * 20 18 16 22 22 H 1.48510 * 109.46874 * 210.00367 * 20 18 16 23 23 H 1.48499 * 109.47309 * 329.99964 * 20 18 16 24 24 C 1.34736 * 120.27851 * 359.97438 * 15 14 13 25 25 O 1.21878 * 120.61986 * 180.02562 * 24 15 14 26 26 C 1.39050 * 109.88915 * 359.97438 * 12 11 9 27 27 C 1.39452 * 119.84866 * 0.25716 * 7 6 5 28 28 C 1.37916 * 119.92145 * 359.46725 * 27 7 6 29 29 H 1.08993 * 109.47287 * 59.99946 * 1 2 3 30 30 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47282 * 299.99742 * 1 2 3 32 32 H 1.08998 * 109.47606 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47339 * 119.99887 * 2 1 3 34 34 H 1.07999 * 119.96118 * 359.97396 * 5 4 3 35 35 H 1.08003 * 120.04269 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47082 * 180.31673 * 10 9 8 37 37 H 1.08996 * 109.47247 * 300.32575 * 10 9 8 38 38 H 1.09010 * 109.46582 * 60.32111 * 10 9 8 39 39 H 1.08002 * 119.10765 * 180.02562 * 14 13 12 40 40 H 0.96994 * 119.99542 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03452 * 179.74783 * 27 7 6 42 42 H 1.08003 * 119.95752 * 180.27989 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 3.8826 2.8089 0.0000 6 6 5.2493 2.9932 0.0000 7 6 6.1003 1.8885 0.0011 8 6 7.5698 2.0827 0.0006 9 6 8.2228 2.6546 -1.0123 10 6 7.5665 3.1638 -2.2697 11 16 9.9450 2.7284 -0.6939 12 6 9.7608 1.9596 0.8771 13 7 10.6819 1.6367 1.8105 14 6 10.3501 1.0628 2.9286 15 7 9.0567 0.7551 3.2204 16 6 8.7511 0.1490 4.4124 17 1 7.7861 0.3120 4.8693 18 6 9.6833 -0.6751 5.0323 19 7 10.6985 -1.1490 4.3477 20 14 9.4916 -1.1083 6.8392 21 1 8.6810 -2.3457 6.9683 22 1 10.8316 -1.3294 7.4400 23 1 8.8101 0.0060 7.5457 24 6 8.0754 1.0434 2.3433 25 8 6.9151 0.7710 2.5984 26 6 8.4199 1.6748 1.1100 27 6 5.5656 0.6005 -0.0033 28 6 4.1979 0.4234 0.0025 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2230 3.6641 -0.0012 35 1 5.6602 3.9921 0.0001 36 1 8.3254 3.5776 -2.9337 37 1 7.0543 2.3423 -2.7705 38 1 6.8449 3.9399 -2.0142 39 1 11.1216 0.8237 3.6456 40 1 11.3491 -1.7238 4.7803 41 1 6.2219 -0.2572 -0.0066 42 1 3.7832 -0.5738 0.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001945113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -14.346317 kcal Electronic energy + Delta-G solvation = -28634.511173 eV Core-core repulsion = 24670.640221 eV Total energy + Delta-G solvation = -3963.870952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 356.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38635 -41.08968 -39.20303 -38.19897 -37.45413 -35.90349 -33.80656 -32.85624 -32.11431 -31.69574 -30.51819 -28.26405 -27.54291 -25.27132 -24.93232 -24.39431 -23.31434 -22.60300 -21.06483 -20.31052 -19.24926 -18.91274 -18.51442 -17.51857 -17.25291 -17.03907 -16.90484 -16.55088 -16.43491 -15.90618 -15.50084 -15.20394 -14.75871 -14.69624 -14.52156 -14.28015 -14.26293 -13.99495 -13.79119 -13.68008 -13.49105 -13.38404 -13.08138 -13.02792 -12.99543 -12.85070 -12.66066 -12.42369 -12.11917 -11.80172 -11.77611 -11.63987 -11.36543 -10.94782 -10.76477 -10.58486 -9.96148 -9.43660 -9.13739 -8.90007 -8.65404 -6.62432 -0.44335 0.27377 0.31929 0.40708 0.81938 0.97095 1.26221 1.36433 1.41386 1.53525 2.02124 2.23858 2.39056 2.48065 2.77251 3.05859 3.56261 3.74014 3.80153 3.84862 3.90995 4.02555 4.15906 4.25635 4.29960 4.32592 4.39026 4.45252 4.62202 4.65659 4.76815 4.79653 4.89432 4.91373 4.92918 5.03586 5.05597 5.17567 5.17635 5.25284 5.33852 5.47296 5.55111 5.69745 5.76766 5.97209 6.24811 6.43348 6.62750 7.10106 7.35068 8.16432 Molecular weight = 356.10amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.003873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.943672 B = 7227.537191 C =10068.566816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.325 6.325 4 C 0.121 3.879 5 C -0.153 4.153 6 C -0.067 4.067 7 C -0.058 4.058 8 C -0.021 4.021 9 C -0.188 4.188 10 C -0.069 4.069 11 S 0.194 5.806 12 C 0.059 3.941 13 N -0.545 5.545 14 C 0.358 3.642 15 N -0.349 5.349 16 C -0.373 4.373 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.862 5.862 20 Si 1.015 2.985 21 H -0.269 1.269 22 H -0.251 1.251 23 H -0.259 1.259 24 C 0.487 3.513 25 O -0.583 6.583 26 C -0.275 4.275 27 C -0.056 4.056 28 C -0.209 4.209 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.210 0.790 40 H 0.301 0.699 41 H 0.094 0.906 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 4.582 -9.614 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.240 6.240 4 C 0.076 3.924 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.060 4.060 8 C -0.033 4.033 9 C -0.304 4.304 10 C -0.128 4.128 11 S 0.454 5.546 12 C -0.181 4.181 13 N -0.272 5.272 14 C 0.074 3.926 15 N -0.048 5.048 16 C -0.501 4.501 17 H 0.120 0.880 18 C -0.187 4.187 19 N -0.494 5.494 20 Si 0.833 3.167 21 H -0.194 1.194 22 H -0.175 1.175 23 H -0.183 1.183 24 C 0.288 3.712 25 O -0.467 6.467 26 C -0.291 4.291 27 C -0.075 4.075 28 C -0.228 4.228 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.569 5.154 -10.501 13.932 hybrid contribution -1.429 -1.864 2.108 3.156 sum -8.998 3.290 -8.393 12.736 Atomic orbital electron populations 1.21784 0.90745 1.04199 1.03445 1.23053 0.97346 0.81040 1.01793 1.86023 1.18322 1.30931 1.88687 1.19089 0.82507 0.94197 0.96615 1.20505 0.94828 0.95214 1.06634 1.21087 0.91948 0.98353 0.97128 1.18245 0.90345 0.93626 1.03821 1.17884 0.92783 1.00630 0.91984 1.24400 0.96292 1.08097 1.01605 1.20413 1.00442 1.01624 0.90304 1.83180 1.03806 1.60927 1.06638 1.24122 0.91611 1.01351 1.00989 1.67974 1.33385 1.23234 1.02616 1.25058 0.86381 0.87889 0.93237 1.42848 1.07406 1.39077 1.15492 1.20272 1.05060 1.29190 0.95550 0.88021 1.26614 0.94028 0.92261 1.05783 1.69789 1.13265 1.27712 1.38607 0.84646 0.79404 0.79100 0.73525 1.19366 1.17479 1.18310 1.17340 0.86105 0.83334 0.84443 1.90693 1.18916 1.58522 1.78564 1.20725 0.94421 1.14855 0.99116 1.20779 0.94550 0.96150 0.96016 1.21182 0.93380 0.98958 1.09254 0.91101 0.88297 0.91899 0.91092 0.92556 0.82907 0.83679 0.89111 0.90314 0.89193 0.77379 0.88733 0.88792 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.04 0.89 5.46 71.98 0.39 1.28 16 3 O -0.33 -8.94 10.13 -92.52 -0.94 -9.88 16 4 C 0.12 3.79 6.69 22.55 0.15 3.94 16 5 C -0.15 -4.52 9.97 22.33 0.22 -4.30 16 6 C -0.07 -2.13 8.90 22.48 0.20 -1.93 16 7 C -0.06 -2.21 4.28 -20.04 -0.09 -2.29 16 8 C -0.02 -0.85 5.36 -19.82 -0.11 -0.96 16 9 C -0.19 -6.03 6.42 24.59 0.16 -5.87 16 10 C -0.07 -1.51 9.50 71.24 0.68 -0.84 16 11 S 0.19 6.42 23.18 -56.49 -1.31 5.11 16 12 C 0.06 2.65 7.68 84.39 0.65 3.30 16 13 N -0.54 -25.89 10.42 -193.62 -2.02 -27.90 16 14 C 0.36 17.83 10.29 180.07 1.85 19.68 16 15 N -0.35 -18.99 2.74 -478.73 -1.31 -20.30 16 16 C -0.37 -19.97 9.10 84.04 0.76 -19.21 16 17 H 0.10 5.67 7.58 -2.91 -0.02 5.65 16 18 C 0.02 1.06 5.00 84.96 0.42 1.48 16 19 N -0.86 -41.39 11.19 21.67 0.24 -41.15 16 20 Si 1.01 36.53 29.59 68.60 2.03 38.56 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 23 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 24 C 0.49 27.10 7.45 85.38 0.64 27.74 16 25 O -0.58 -34.68 14.92 -4.92 -0.07 -34.75 16 26 C -0.27 -13.36 6.07 -20.05 -0.12 -13.48 16 27 C -0.06 -2.21 8.64 22.49 0.19 -2.02 16 28 C -0.21 -7.05 9.02 22.33 0.20 -6.85 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 33 H 0.06 1.24 7.65 -2.39 -0.02 1.22 16 34 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.15 3.92 7.90 -2.91 -0.02 3.89 16 36 H 0.09 1.52 8.13 -2.39 -0.02 1.51 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.73 7.42 -2.38 -0.02 1.71 16 39 H 0.21 9.92 6.18 -2.91 -0.02 9.91 16 40 H 0.30 12.91 8.31 -92.71 -0.77 12.14 16 41 H 0.09 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.14 4.01 6.28 -2.91 -0.02 4.00 16 Total: -1.00 -68.19 369.37 4.64 -63.55 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 1.07 Total: 28.50 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.95 Total: -1.73 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.09 Total: -89.36 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.01 Total: -44.64 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.31 Total: 5.11 kcal Total: -68.19 4.64 -63.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001945113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.199 kcal (2) G-P(sol) polarization free energy of solvation -68.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds