Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31652 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48498 * 109.46939 * 239.99450 * 3 2 1 5 5 H 1.48504 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47371 * 119.99529 * 3 2 1 7 7 C 1.38644 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99687 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.76211 * 99.99897 * 179.97438 * 9 7 2 11 11 N 1.31597 * 126.40364 * 0.02562 * 10 9 7 12 12 N 1.28494 * 110.08019 * 179.97438 * 11 10 9 13 13 C 1.31526 * 110.01285 * 359.72015 * 12 11 10 14 14 C 1.47751 * 126.45926 * 180.31325 * 13 12 11 15 15 C 1.39624 * 120.14503 * 17.69087 * 14 13 12 16 16 C 1.37949 * 119.84205 * 179.74791 * 15 14 13 17 17 C 1.38375 * 120.15156 * 0.52720 * 16 15 14 18 18 C 1.38370 * 120.29886 * 359.74939 * 17 16 15 19 19 C 1.37948 * 120.15231 * 359.97100 * 18 17 16 20 20 N 1.36962 * 126.40351 * 180.02562 * 10 9 7 21 21 C 1.40164 * 127.18898 * 0.02562 * 20 10 9 22 22 C 1.38841 * 120.05761 * 68.18470 * 21 20 10 23 23 C 1.38102 * 119.94684 * 179.97438 * 22 21 20 24 24 C 1.38387 * 120.05467 * 0.27410 * 23 22 21 25 25 Cl 1.73600 * 119.94654 * 179.72612 * 24 23 22 26 26 C 1.38386 * 120.10747 * 359.45339 * 24 23 22 27 27 C 1.38106 * 120.05448 * 0.54884 * 26 24 23 28 28 H 0.96999 * 119.99748 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.08076 * 0.02562 * 15 14 13 30 30 H 1.08001 * 119.92556 * 180.30086 * 16 15 14 31 31 H 1.07998 * 119.85184 * 179.72224 * 17 16 15 32 32 H 1.08003 * 119.92799 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.07642 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.02379 * 0.02562 * 22 21 20 35 35 H 1.08006 * 119.97362 * 180.02562 * 23 22 21 36 36 H 1.07997 * 119.97178 * 180.25732 * 26 24 23 37 37 H 1.08006 * 120.02902 * 179.75180 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.1043 1.6963 -1.2124 5 1 1.2855 2.7465 -0.0006 6 1 3.1042 1.6965 1.2126 7 6 2.0097 -1.2007 0.0005 8 1 3.0897 -1.2007 0.0010 9 16 1.1287 -2.7266 0.0005 10 6 2.4785 -3.8593 0.0005 11 7 3.7576 -3.5499 0.0010 12 7 4.4701 -4.6192 0.0014 13 6 3.6913 -5.6791 0.0072 14 6 4.1289 -7.0903 0.0161 15 6 5.4350 -7.4170 0.3859 16 6 5.8355 -8.7371 0.3970 17 6 4.9493 -9.7353 0.0322 18 6 3.6552 -9.4178 -0.3409 19 6 3.2399 -8.1024 -0.3509 20 7 2.3926 -5.2262 0.0000 21 6 1.2250 -6.0017 -0.0011 22 6 0.3995 -6.0141 -1.1173 23 6 -0.7501 -6.7794 -1.1161 24 6 -1.0824 -7.5291 -0.0014 25 17 -2.5318 -8.4846 -0.0003 26 6 -0.2583 -7.5229 1.1103 27 6 0.8923 -6.7591 1.1140 28 1 -0.4850 0.8401 -0.0004 29 1 6.1288 -6.6386 0.6670 30 1 6.8440 -8.9917 0.6875 31 1 5.2693 -10.7668 0.0383 32 1 2.9687 -10.2017 -0.6250 33 1 2.2294 -7.8561 -0.6420 34 1 0.6566 -5.4264 -1.9861 35 1 -1.3924 -6.7897 -1.9844 36 1 -0.5177 -8.1120 1.9775 37 1 1.5331 -6.7514 1.9834 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002626041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = 122.405563 kcal Electronic energy + Delta-G solvation = -25507.121544 eV Core-core repulsion = 21788.630758 eV Total energy + Delta-G solvation = -3718.490786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 357.040 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.35550 -39.51863 -38.90063 -36.78523 -34.42599 -32.74068 -32.25233 -31.40865 -30.95599 -29.52159 -28.81258 -25.77807 -24.07979 -23.40445 -22.93368 -22.62056 -21.34144 -20.49612 -18.73135 -17.65278 -17.07402 -16.52432 -16.26590 -15.74518 -15.49122 -15.00235 -14.81038 -14.67400 -14.44327 -13.82838 -13.80989 -13.75219 -13.37699 -13.08124 -12.87298 -12.64062 -12.01806 -11.91661 -11.55076 -11.40783 -11.19974 -11.17337 -11.10790 -11.06124 -10.79832 -10.32920 -10.18281 -10.08650 -10.02740 -9.36143 -9.28725 -9.02273 -8.96489 -8.75006 -8.39967 -6.84834 -6.54474 -4.29692 0.64604 0.92792 1.00079 1.34233 1.85429 2.25119 2.34858 3.06969 3.18493 3.19549 3.25446 3.26586 3.36448 3.89033 3.95148 4.37666 4.53886 4.59262 4.79342 4.87418 4.89879 4.94556 4.94800 5.04864 5.08820 5.27251 5.32372 5.41033 5.64823 5.66699 5.78249 5.81758 5.92856 5.95338 6.03003 6.18737 6.30152 6.34247 6.41285 6.53544 6.59449 6.86084 7.31992 7.49784 8.28896 8.97211 9.24499 10.53351 Molecular weight = 357.04amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003976 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.793280 B = 7040.918791 C =10036.205470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.106 0.894 9 S 0.157 5.843 10 C 0.181 3.819 11 N -0.301 5.301 12 N -0.262 5.262 13 C 0.178 3.822 14 C 0.007 3.993 15 C -0.084 4.084 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.113 4.113 20 N -0.440 5.440 21 C 0.138 3.862 22 C -0.088 4.088 23 C -0.095 4.095 24 C -0.027 4.027 25 Cl -0.066 7.066 26 C -0.098 4.098 27 C -0.090 4.090 28 H 0.276 0.724 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 -20.365 0.026 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.688 4.688 8 H 0.124 0.876 9 S 0.392 5.608 10 C -0.187 4.187 11 N -0.147 5.147 12 N -0.102 5.102 13 C -0.087 4.087 14 C 0.004 3.996 15 C -0.105 4.105 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.134 4.134 20 N -0.135 5.135 21 C 0.046 3.954 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.054 4.054 25 Cl -0.037 7.037 26 C -0.118 4.118 27 C -0.110 4.110 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.962 -19.485 0.019 19.509 hybrid contribution 0.461 0.461 0.007 0.652 sum -0.501 -19.024 0.026 19.031 Atomic orbital electron populations 1.69940 1.06082 1.28749 1.46268 1.25075 0.95192 0.99677 0.93228 0.85955 0.79087 0.79471 0.79619 1.19337 1.20706 1.19339 1.23215 0.97311 0.89161 1.59091 0.87610 1.83626 0.97054 0.95204 1.84938 1.28730 1.02430 0.84677 1.02817 1.74816 0.98634 1.18221 1.22994 1.74240 1.26335 0.94262 1.15360 1.22716 0.79981 0.95302 1.10737 1.17501 0.94454 0.86661 1.01012 1.21222 0.94590 0.96812 0.97837 1.21079 0.99835 0.92390 1.00326 1.21229 0.93788 0.99309 0.99478 1.20983 0.96310 0.95751 1.00355 1.21400 0.99555 0.92606 0.99797 1.43677 1.04750 1.05347 1.59770 1.17545 0.87428 0.95432 0.95017 1.21254 0.93704 0.98042 0.97774 1.20943 0.96746 0.95821 0.97940 1.20998 0.90265 0.97740 0.96407 1.98378 1.36143 1.70520 1.98656 1.20889 0.93364 0.99732 0.97771 1.21169 0.96753 0.95887 0.97141 0.91421 0.84777 0.85595 0.86015 0.85841 0.85871 0.83861 0.83773 0.83967 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.01 13.22 55.48 0.73 -23.28 16 2 C 0.08 2.09 5.49 -17.48 -0.10 1.99 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.86 9.37 30.88 0.29 -14.57 16 8 H 0.11 3.01 6.92 -52.48 -0.36 2.64 16 9 S 0.16 3.87 21.58 -107.50 -2.32 1.55 16 10 C 0.18 4.17 8.02 -87.68 -0.70 3.47 16 11 N -0.30 -7.48 11.03 30.82 0.34 -7.14 16 12 N -0.26 -5.84 12.00 32.61 0.39 -5.45 16 13 C 0.18 3.39 7.67 -153.62 -1.18 2.21 16 14 C 0.01 0.10 5.87 -104.97 -0.62 -0.52 16 15 C -0.08 -1.13 9.70 -39.17 -0.38 -1.51 16 16 C -0.12 -1.24 10.03 -39.64 -0.40 -1.64 16 17 C -0.12 -1.14 10.04 -39.48 -0.40 -1.53 16 18 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 19 C -0.11 -1.46 8.61 -39.17 -0.34 -1.79 16 20 N -0.44 -8.40 2.85 -58.10 -0.17 -8.57 16 21 C 0.14 2.12 3.31 -83.60 -0.28 1.84 16 22 C -0.09 -1.21 9.69 -39.41 -0.38 -1.59 16 23 C -0.10 -1.06 9.82 -39.58 -0.39 -1.45 16 24 C -0.03 -0.29 6.32 -39.47 -0.25 -0.54 16 25 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.14 16 26 C -0.10 -1.04 9.82 -39.58 -0.39 -1.43 16 27 C -0.09 -1.16 8.55 -39.41 -0.34 -1.50 16 28 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.13 1.84 7.96 -52.49 -0.42 1.42 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.57 4.91 -52.49 -0.26 1.32 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -30.97 357.38 -11.53 -42.51 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.13 Total: 1.32 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -6.24 Total: -20.16 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 1.30 Total: -44.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.32 Total: 1.55 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.97 -11.53 -42.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002626041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.911 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds