Wall clock time and date at job start Tue Mar 31 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35955 * 117.00211 * 2 1 4 4 C 1.38212 * 119.99838 * 0.02562 * 3 2 1 5 5 C 1.39750 * 119.87195 * 179.97438 * 4 3 2 6 6 C 1.47378 * 120.05751 * 179.97438 * 5 4 3 7 7 N 1.29801 * 119.99686 * 180.02562 * 6 5 4 8 8 N 1.40102 * 119.99841 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99587 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00272 * 0.02562 * 9 8 7 11 11 O 1.21604 * 119.99488 * 180.02562 * 9 8 7 12 12 C 1.39814 * 119.87985 * 0.02562 * 5 4 3 13 13 C 1.37858 * 120.00080 * 0.02562 * 12 5 4 14 14 Br 1.89097 * 119.93136 * 179.97438 * 13 12 5 15 15 C 1.39034 * 120.12823 * 359.68152 * 13 12 5 16 16 O 1.35718 * 119.94117 * 180.32370 * 15 13 12 17 17 C 1.34784 * 116.99494 * 270.27666 * 16 15 13 18 18 H 1.07998 * 120.00449 * 0.02562 * 17 16 15 19 19 C 1.38617 * 119.99621 * 179.97438 * 17 16 15 20 20 N 1.31577 * 120.00174 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46889 * 60.00464 * 21 19 17 23 23 H 1.48504 * 109.46717 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47345 * 300.00260 * 21 19 17 25 25 H 1.09002 * 109.47220 * 299.99831 * 1 2 3 26 26 H 1.08996 * 109.47672 * 59.99775 * 1 2 3 27 27 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.06584 * 0.02955 * 4 3 2 29 29 H 1.07997 * 120.00138 * 0.02562 * 6 5 4 30 30 H 0.96993 * 119.99993 * 0.02562 * 8 7 6 31 31 H 0.96997 * 120.00156 * 359.97438 * 10 9 8 32 32 H 0.97005 * 120.00215 * 179.97438 * 10 9 8 33 33 H 1.07999 * 119.99772 * 179.97438 * 12 5 4 34 34 H 0.96998 * 120.00421 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2934 2.3705 0.0005 5 6 1.9307 3.6142 0.0011 6 6 1.1320 4.8529 0.0011 7 7 1.7251 6.0074 0.0011 8 7 0.9659 7.1849 0.0005 9 6 1.5818 8.3838 0.0000 10 7 2.9279 8.4499 -0.0005 11 8 0.9228 9.4058 0.0000 12 6 3.3272 3.6814 0.0005 13 6 4.0730 2.5219 -0.0011 14 35 5.9617 2.6150 -0.0025 15 6 3.4393 1.2845 0.0045 16 8 4.1772 0.1455 0.0096 17 6 4.5147 -0.3702 -1.1891 18 1 4.1988 0.1220 -2.0970 19 6 5.2681 -1.5318 -1.2566 20 7 5.6535 -2.1312 -0.1504 21 14 5.7352 -2.2469 -2.9179 22 1 6.5381 -1.2541 -3.6761 23 1 6.5351 -3.4820 -2.7178 24 1 4.5034 -2.5735 -3.6803 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2149 2.3152 0.0014 29 1 0.0534 4.7999 0.0011 30 1 -0.0028 7.1373 0.0005 31 1 3.4535 7.6347 -0.0001 32 1 3.3712 9.3127 -0.0013 33 1 3.8216 4.6415 0.0005 34 1 6.1804 -2.9442 -0.1976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002752657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:47 Heat of formation + Delta-G solvation = -41.795294 kcal Electronic energy + Delta-G solvation = -22695.699843 eV Core-core repulsion = 18869.766202 eV Total energy + Delta-G solvation = -3825.933641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 357.016 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34258 -40.89084 -38.93800 -38.58483 -37.21406 -34.65541 -34.04592 -33.23482 -32.40713 -30.21181 -29.98022 -27.97053 -26.94490 -24.73875 -23.12673 -22.45995 -21.82926 -20.00281 -19.43588 -19.08359 -18.51721 -17.81553 -17.39078 -16.61089 -16.57389 -16.43723 -16.26369 -15.86556 -15.48018 -15.31597 -14.99736 -14.89190 -14.21672 -13.63786 -13.38082 -13.35934 -13.19754 -12.73055 -12.34758 -12.26722 -12.17383 -11.90978 -11.83077 -11.65503 -11.54639 -11.42277 -10.93325 -10.77745 -10.25021 -10.16591 -9.41251 -8.85501 -8.11339 -5.84562 -0.39266 0.23534 0.80527 1.17354 1.40711 1.42565 1.48550 1.54906 2.10499 2.34910 2.51202 2.70821 2.84383 3.22035 3.57090 3.71489 3.98849 4.13254 4.20383 4.39140 4.42726 4.51167 4.68484 4.74568 4.83564 5.06106 5.22694 5.24479 5.26391 5.53949 5.63257 5.87601 6.20389 6.22882 6.55997 7.04711 7.30045 7.53612 8.10111 9.10466 Molecular weight = 357.02amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.003530 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.011037 B = 7929.175219 C = 9362.363743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.088 3.912 4 C -0.137 4.137 5 C -0.036 4.036 6 C 0.151 3.849 7 N -0.270 5.270 8 N -0.580 5.580 9 C 0.731 3.269 10 N -0.836 5.836 11 O -0.631 6.631 12 C -0.076 4.076 13 C -0.106 4.106 14 Br -0.043 7.043 15 C 0.098 3.902 16 O -0.252 6.252 17 C -0.350 4.350 18 H 0.065 0.935 19 C -0.025 4.025 20 N -0.930 5.930 21 Si 0.992 3.008 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.183 0.817 29 H 0.169 0.831 30 H 0.410 0.590 31 H 0.416 0.584 32 H 0.422 0.578 33 H 0.156 0.844 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 13.441 -0.673 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.041 3.959 4 C -0.158 4.158 5 C -0.039 4.039 6 C -0.060 4.060 7 N -0.078 5.078 8 N -0.328 5.328 9 C 0.429 3.571 10 N -0.404 5.404 11 O -0.510 6.510 12 C -0.098 4.098 13 C -0.186 4.186 14 Br 0.042 6.958 15 C 0.049 3.951 16 O -0.165 6.165 17 C -0.427 4.427 18 H 0.082 0.918 19 C -0.219 4.219 20 N -0.573 5.573 21 Si 0.814 3.186 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.200 0.800 29 H 0.186 0.814 30 H 0.252 0.748 31 H 0.247 0.753 32 H 0.255 0.745 33 H 0.174 0.826 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.692 14.333 -0.459 16.769 hybrid contribution -0.806 -0.939 -0.571 1.362 sum -9.497 13.394 -1.029 16.452 Atomic orbital electron populations 1.23437 0.76470 1.05366 1.02880 1.86323 1.23426 1.26193 1.88391 1.19472 0.90979 0.86119 0.99371 1.21504 1.01702 0.88975 1.03588 1.17994 0.91221 0.91049 1.03652 1.24232 0.99449 0.88122 0.94152 1.74352 1.25216 0.93683 1.14528 1.46118 1.08680 1.01419 1.76575 1.15609 0.83488 0.81453 0.76560 1.42861 1.04436 1.14094 1.79040 1.91020 1.66030 1.33057 1.60931 1.21222 0.93330 0.96467 0.98814 1.22247 0.91362 0.95063 1.09963 1.96604 1.03089 1.98495 1.97586 1.18947 0.88956 0.88020 0.99136 1.83882 1.67951 1.35236 1.29382 1.20920 1.32406 1.07640 0.81699 0.91753 1.25952 0.97567 0.96542 1.01843 1.70175 1.38925 1.19672 1.28570 0.85026 0.78685 0.77855 0.77024 1.18969 1.20415 1.18933 0.90477 0.90652 0.87666 0.79991 0.81430 0.74771 0.75261 0.74509 0.82626 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -12.31 10.27 -79.05 -0.81 -13.12 16 3 C 0.09 3.15 6.70 22.57 0.15 3.30 16 4 C -0.14 -3.16 8.77 22.63 0.20 -2.96 16 5 C -0.04 -0.78 5.87 -20.12 -0.12 -0.89 16 6 C 0.15 2.14 10.74 87.40 0.94 3.08 16 7 N -0.27 -4.50 9.46 -52.23 -0.49 -4.99 16 8 N -0.58 -9.74 6.27 -184.73 -1.16 -10.90 16 9 C 0.73 15.69 8.95 179.05 1.60 17.29 16 10 N -0.84 -13.13 8.84 -184.73 -1.63 -14.76 16 11 O -0.63 -18.36 18.02 -4.04 -0.07 -18.43 16 12 C -0.08 -2.12 9.30 22.56 0.21 -1.91 16 13 C -0.11 -4.00 6.23 22.37 0.14 -3.87 16 14 Br -0.04 -1.69 33.07 -20.37 -0.67 -2.36 16 15 C 0.10 4.36 5.60 22.77 0.13 4.49 16 16 O -0.25 -14.21 8.78 -7.93 -0.07 -14.28 16 17 C -0.35 -19.92 9.74 67.91 0.66 -19.26 16 18 H 0.06 3.54 7.75 -2.91 -0.02 3.51 16 19 C -0.02 -1.42 5.49 84.82 0.47 -0.95 16 20 N -0.93 -57.85 13.67 21.61 0.30 -57.56 16 21 Si 0.99 44.49 29.55 68.60 2.03 46.52 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 26 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.18 2.38 6.28 -2.91 -0.02 2.36 16 29 H 0.17 0.95 8.02 -2.91 -0.02 0.93 16 30 H 0.41 5.23 8.75 -213.33 -1.87 3.36 16 31 H 0.42 5.79 7.87 -92.71 -0.73 5.06 16 32 H 0.42 5.20 8.93 -92.70 -0.83 4.37 16 33 H 0.16 3.69 7.54 -2.91 -0.02 3.67 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -81.47 333.38 0.68 -80.78 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -2.22 Total: 9.41 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.49 Total: -0.31 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.99 Total: -88.21 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.95 Total: -45.83 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -0.67 Total: -2.36 kcal Total: -81.47 0.68 -80.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002752657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.989 kcal (2) G-P(sol) polarization free energy of solvation -81.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds