Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 C 1.52999 * 109.47521 * 239.99671 * 2 1 3 5 5 C 1.52997 * 109.47196 * 119.99366 * 2 1 3 6 6 H 1.09000 * 109.65709 * 299.72896 * 5 2 1 7 7 C 1.53162 * 109.56687 * 179.44246 * 5 2 1 8 8 C 1.52946 * 109.17591 * 169.68421 * 7 5 2 9 9 C 1.52417 * 108.83391 * 51.04961 * 8 7 5 10 10 C 1.33817 * 123.07666 * 342.58647 * 9 8 7 11 11 S 1.75652 * 110.84832 * 180.02562 * 10 9 8 12 12 C 1.75779 * 91.78371 * 359.95985 * 11 10 9 13 13 N 1.34834 * 130.85387 * 180.02562 * 12 11 10 14 14 C 1.29838 * 122.85960 * 179.97438 * 13 12 11 15 15 N 1.35947 * 122.16208 * 0.27871 * 14 13 12 16 16 N 1.40125 * 133.85299 * 180.36974 * 15 14 13 17 17 C 1.33102 * 106.85384 * 179.57530 * 16 15 14 18 18 C 1.41429 * 125.47887 * 179.75551 * 17 16 15 19 19 H 1.08007 * 119.99978 * 174.28290 * 18 17 16 20 20 C 1.39918 * 120.00349 * 354.27390 * 18 17 16 21 21 N 1.30817 * 119.99642 * 6.05377 * 20 18 17 22 22 Si 1.86795 * 120.00345 * 186.04652 * 20 18 17 23 23 H 1.48503 * 109.46918 * 94.98526 * 22 20 18 24 24 H 1.48497 * 109.47258 * 214.98499 * 22 20 18 25 25 H 1.48503 * 109.47050 * 334.99180 * 22 20 18 26 26 N 1.34469 * 109.03916 * 359.77233 * 17 16 15 27 27 C 1.31411 * 109.52759 * 359.97438 * 26 17 16 28 28 C 1.38820 * 109.22230 * 0.02596 * 12 11 10 29 29 C 1.51745 * 124.58229 * 0.02562 * 10 9 8 30 30 H 1.09001 * 109.47313 * 300.00297 * 1 2 3 31 31 H 1.09001 * 109.47022 * 60.00384 * 1 2 3 32 32 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47156 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46772 * 299.99145 * 3 2 1 35 35 H 1.08991 * 109.47391 * 59.99866 * 3 2 1 36 36 H 1.08998 * 109.46655 * 300.00340 * 4 2 1 37 37 H 1.09001 * 109.47017 * 59.99942 * 4 2 1 38 38 H 1.08993 * 109.47464 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.52119 * 289.59536 * 7 5 2 40 40 H 1.09002 * 109.51982 * 49.77561 * 7 5 2 41 41 H 1.09003 * 109.57839 * 170.87446 * 8 7 5 42 42 H 1.09004 * 109.57359 * 291.13040 * 8 7 5 43 43 H 1.07992 * 118.92477 * 179.97438 * 14 13 12 44 44 H 0.96997 * 119.99659 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.58504 * 103.32622 * 29 10 9 46 46 H 1.08999 * 109.58449 * 223.75183 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 1.6823 -0.2067 2.1413 7 6 3.5715 -0.7345 1.2445 8 6 4.0739 -1.2210 2.6047 9 6 3.3686 -2.5269 2.9515 10 6 2.2459 -2.9333 2.3473 11 16 1.7115 -4.4765 2.9940 12 6 3.0692 -4.5420 4.1085 13 7 3.4157 -5.4703 5.0229 14 6 4.4684 -5.3599 5.7749 15 7 5.3027 -4.2891 5.6993 16 7 6.4798 -3.9265 6.3674 17 6 6.8650 -2.7565 5.8631 18 6 8.0098 -2.0279 6.2614 19 1 8.2915 -1.1312 5.7293 20 6 8.7775 -2.4685 7.3450 21 7 8.5075 -3.6147 7.9148 22 14 10.1881 -1.4202 7.9781 23 1 9.7140 -0.5837 9.1097 24 1 11.2903 -2.3010 8.4413 25 1 10.6812 -0.5425 6.8864 26 7 5.9904 -2.3786 4.9142 27 6 5.0479 -3.2869 4.7986 28 6 3.8525 -3.4081 3.9417 29 6 1.5309 -2.1649 1.2514 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.9274 -1.4062 0.4633 40 1 3.9440 0.2727 1.0576 41 1 5.1501 -1.3879 2.5582 42 1 3.8531 -0.4716 3.3649 43 1 4.6858 -6.1419 6.4872 44 1 9.0400 -3.9204 8.6657 45 1 1.7382 -2.6270 0.2863 46 1 0.4574 -2.1734 1.4399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002798190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = 106.903830 kcal Electronic energy + Delta-G solvation = -29144.116735 eV Core-core repulsion = 25353.629430 eV Total energy + Delta-G solvation = -3790.487305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24697 -39.78489 -37.96926 -36.33781 -33.77623 -32.99377 -31.34420 -30.87412 -29.55743 -27.97774 -27.46799 -27.37289 -26.73533 -24.02295 -23.84100 -22.07145 -22.01635 -20.57530 -19.25515 -18.21834 -17.60950 -17.24418 -16.97523 -16.22455 -15.29409 -15.08652 -15.01227 -14.69580 -14.56885 -14.36445 -14.18779 -13.80582 -13.35513 -13.26363 -13.07737 -12.75605 -12.60337 -12.38172 -12.19650 -11.93560 -11.89774 -11.65368 -11.56896 -11.43896 -11.36748 -11.19389 -10.97880 -10.96252 -10.76569 -10.44952 -10.41219 -10.32441 -10.14535 -9.98860 -9.76028 -9.61527 -9.30011 -8.64733 -8.56009 -7.69059 -7.36805 -6.84487 -4.84961 0.72230 1.48788 1.96988 2.15240 2.45935 2.94874 3.02442 3.07599 3.35159 3.83561 3.90883 4.20352 4.44394 4.49641 4.60247 4.63263 4.85608 4.98647 5.06654 5.12199 5.23445 5.25916 5.31159 5.42157 5.45888 5.48588 5.51085 5.52575 5.61289 5.64938 5.71049 5.76047 5.78894 5.86621 5.91860 5.99219 6.02966 6.12325 6.21693 6.29519 6.31036 6.37296 6.49514 6.66283 6.70886 6.86091 7.02634 7.38642 7.78068 8.08599 8.27794 8.43315 8.62076 9.59343 10.12877 Molecular weight = 356.14amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003025 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.557640 B = 9254.606282 C =11237.565594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.147 4.147 5 C -0.072 4.072 6 H 0.075 0.925 7 C -0.117 4.117 8 C -0.056 4.056 9 C -0.037 4.037 10 C -0.210 4.210 11 S 0.151 5.849 12 C 0.056 3.944 13 N -0.519 5.519 14 C 0.393 3.607 15 N -0.356 5.356 16 N -0.347 5.347 17 C 0.347 3.653 18 C -0.404 4.404 19 H 0.098 0.902 20 C 0.066 3.934 21 N -0.750 5.750 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.259 1.259 26 N -0.543 5.543 27 C 0.307 3.693 28 C -0.116 4.116 29 C -0.034 4.034 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.201 0.799 44 H 0.282 0.718 45 H 0.081 0.919 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 4.192 -12.881 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.204 4.204 5 C -0.092 4.092 6 H 0.094 0.906 7 C -0.154 4.154 8 C -0.095 4.095 9 C -0.049 4.049 10 C -0.326 4.326 11 S 0.416 5.584 12 C -0.180 4.180 13 N -0.241 5.241 14 C 0.104 3.896 15 N -0.139 5.139 16 N -0.184 5.184 17 C 0.095 3.905 18 C -0.445 4.445 19 H 0.116 0.884 20 C -0.157 4.157 21 N -0.376 5.376 22 Si 0.751 3.249 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.182 1.182 26 N -0.272 5.272 27 C 0.038 3.962 28 C -0.133 4.133 29 C -0.073 4.073 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.217 0.783 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.837 2.474 -12.633 18.899 hybrid contribution 2.118 1.576 0.780 2.752 sum -11.720 4.049 -11.852 17.153 Atomic orbital electron populations 1.21927 0.94777 1.01846 1.01560 1.20529 0.95317 0.95443 0.95014 1.21940 1.01514 0.95181 1.01492 1.21999 1.01547 1.00257 0.96592 1.21216 0.95918 0.94362 0.97663 0.90641 1.21755 0.94613 1.01566 0.97446 1.20586 1.00355 0.92144 0.96420 1.19078 0.94377 0.97007 0.94452 1.24240 1.01607 1.00183 1.06612 1.83611 1.23840 1.18873 1.32074 1.23047 1.00037 0.94253 1.00692 1.67534 1.17304 1.29107 1.10115 1.24054 0.83050 0.88383 0.94116 1.49874 1.21000 1.15898 1.27107 1.80087 0.96012 1.18914 1.23410 1.21297 0.92962 0.89093 0.87139 1.18655 1.04524 1.08867 1.12406 0.88396 1.25987 0.98758 0.95193 0.95806 1.69892 1.34418 1.16480 1.16777 0.85967 0.79335 0.79851 0.79717 1.19308 1.20004 1.18226 1.70822 1.05234 1.27204 1.23984 1.22389 0.94486 0.87760 0.91542 1.18561 0.95623 0.97520 1.01616 1.20414 0.98311 0.93726 0.94888 0.92663 0.92897 0.92427 0.92030 0.92941 0.92646 0.92336 0.93011 0.92149 0.91614 0.90982 0.89314 0.90439 0.78268 0.90733 0.90114 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.14 37.16 0.30 -0.77 16 2 C -0.06 -0.51 0.57 -154.51 -0.09 -0.60 16 3 C -0.14 -1.15 8.16 37.16 0.30 -0.84 16 4 C -0.15 -1.15 7.80 37.16 0.29 -0.86 16 5 C -0.07 -0.73 1.55 -90.49 -0.14 -0.87 16 6 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 7 C -0.12 -1.36 4.39 -26.68 -0.12 -1.48 16 8 C -0.06 -0.87 5.80 -27.06 -0.16 -1.03 16 9 C -0.04 -0.64 5.79 -104.23 -0.60 -1.24 16 10 C -0.21 -3.03 6.31 -35.34 -0.22 -3.25 16 11 S 0.15 2.24 23.25 -107.50 -2.50 -0.26 16 12 C 0.06 1.08 7.69 -16.02 -0.12 0.95 16 13 N -0.52 -10.10 10.33 -12.75 -0.13 -10.23 16 14 C 0.39 7.91 12.37 -90.09 -1.11 6.80 16 15 N -0.36 -8.70 3.94 -11.80 -0.05 -8.75 16 16 N -0.35 -9.66 11.00 30.86 0.34 -9.32 16 17 C 0.35 9.75 7.60 -157.78 -1.20 8.55 16 18 C -0.40 -10.88 9.50 -37.74 -0.36 -11.24 16 19 H 0.10 2.49 7.85 -52.48 -0.41 2.08 16 20 C 0.07 1.67 5.49 -17.35 -0.10 1.57 16 21 N -0.75 -19.68 11.92 55.54 0.66 -19.01 16 22 Si 0.93 18.35 29.56 -169.99 -5.03 13.33 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 N -0.54 -14.30 10.90 -10.28 -0.11 -14.41 16 27 C 0.31 7.48 7.92 -154.18 -1.22 6.26 16 28 C -0.12 -2.39 6.05 -104.78 -0.63 -3.03 16 29 C -0.03 -0.37 4.74 -27.32 -0.13 -0.50 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 33 H 0.06 0.50 6.24 -51.93 -0.32 0.18 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.45 6.23 -51.93 -0.32 0.13 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.50 6.67 -51.93 -0.35 0.15 16 39 H 0.07 0.76 6.99 -51.93 -0.36 0.40 16 40 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 41 H 0.09 1.59 7.89 -51.93 -0.41 1.18 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.20 3.25 8.06 -52.49 -0.42 2.83 16 44 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 45 H 0.08 0.79 5.97 -51.93 -0.31 0.48 16 46 H 0.07 0.71 7.05 -51.93 -0.37 0.34 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -30.71 372.95 -12.53 -43.24 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.03 Total: 1.37 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -5.31 Total: -1.57 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.71 Total: -61.72 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.50 Total: -0.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.71 -12.53 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002798190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.140 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds