Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47222 * 2 1 4 4 C 1.36619 * 127.18041 * 86.36469 * 3 2 1 5 5 S 1.76199 * 126.38428 * 359.94432 * 4 3 2 6 6 C 1.80994 * 100.00087 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47277 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00251 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99580 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47378 * 60.00522 * 11 9 7 13 13 H 1.48504 * 109.47166 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47193 * 300.00017 * 11 9 7 15 15 N 1.31390 * 107.23127 * 179.97438 * 4 3 2 16 16 N 1.28503 * 110.09048 * 0.02562 * 15 4 3 17 17 C 1.31267 * 109.97069 * 359.97438 * 16 15 4 18 18 C 1.47849 * 126.46889 * 179.97438 * 17 16 15 19 19 C 1.40099 * 119.97150 * 19.84823 * 18 17 16 20 20 C 1.36427 * 120.67575 * 179.97438 * 19 18 17 21 21 C 1.39265 * 120.23362 * 359.97438 * 20 19 18 22 22 N 1.37716 * 133.25147 * 180.02562 * 21 20 19 23 23 H 0.96998 * 125.04201 * 359.97438 * 22 21 20 24 24 C 1.36817 * 109.91029 * 180.02562 * 22 21 20 25 25 C 1.50700 * 125.02202 * 179.97438 * 24 22 21 26 26 C 1.34220 * 109.95870 * 0.02562 * 24 22 21 27 27 C 1.50705 * 126.51753 * 180.02562 * 26 24 22 28 28 C 1.40756 * 119.64975 * 0.02562 * 21 20 19 29 29 C 1.39018 * 119.97030 * 199.56761 * 18 17 16 30 30 H 1.09003 * 109.47595 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47745 * 300.00386 * 1 2 3 32 32 H 1.08999 * 109.47074 * 60.00352 * 1 2 3 33 33 H 1.08996 * 109.47050 * 239.99336 * 2 1 3 34 34 H 1.09002 * 109.46834 * 120.00107 * 2 1 3 35 35 H 1.08999 * 109.47398 * 299.99983 * 6 5 4 36 36 H 1.08998 * 109.47060 * 60.00354 * 6 5 4 37 37 H 0.97003 * 119.99712 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.66407 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.88030 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.46700 * 89.97821 * 25 24 22 41 41 H 1.08997 * 109.47261 * 209.97474 * 25 24 22 42 42 H 1.09001 * 109.47337 * 329.98285 * 25 24 22 43 43 H 1.08990 * 109.47326 * 89.96510 * 27 26 24 44 44 H 1.09004 * 109.47206 * 209.97568 * 27 26 24 45 45 H 1.09003 * 109.46500 * 329.96815 * 27 26 24 46 46 H 1.08002 * 120.30447 * 0.02575 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2285 2.1826 1.0863 5 16 1.9600 1.7488 2.7728 6 6 2.4520 3.2938 3.5770 7 6 2.3001 3.1537 5.0698 8 1 1.9429 2.2258 5.4915 9 6 2.6179 4.2098 5.8973 10 7 3.0533 5.3396 5.3837 11 14 2.4302 4.0359 7.7476 12 1 3.2940 2.9290 8.2310 13 1 2.8338 5.3036 8.4074 14 1 1.0129 3.7372 8.0755 15 7 2.6675 3.3374 0.6390 16 7 2.7452 3.3133 -0.6435 17 6 2.3612 2.1416 -1.0940 18 6 2.3065 1.7194 -2.5098 19 6 3.0524 2.4084 -3.4750 20 6 3.0130 2.0307 -4.7854 21 6 2.2276 0.9506 -5.1805 22 7 1.9920 0.3505 -6.3974 23 1 2.3834 0.6281 -7.2404 24 6 1.1229 -0.6946 -6.2410 25 6 0.6325 -1.5854 -7.3532 26 6 0.7709 -0.8085 -4.9508 27 6 -0.1670 -1.8319 -4.3642 28 6 1.4734 0.2500 -4.2206 29 6 1.5194 0.6353 -2.8813 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.4922 3.5134 3.3364 36 1 1.8177 4.1061 3.2222 37 1 3.2766 6.0827 5.9658 38 1 3.6649 3.2471 -3.1787 39 1 3.5935 2.5707 -5.5186 40 1 1.3068 -2.4350 -7.4623 41 1 -0.3690 -1.9446 -7.1162 42 1 0.6051 -1.0213 -8.2854 43 1 0.3991 -2.7133 -4.0631 44 1 -0.6695 -1.4081 -3.4946 45 1 -0.9093 -2.1145 -5.1107 46 1 0.9460 0.0987 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002821484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = 119.203527 kcal Electronic energy + Delta-G solvation = -28011.418115 eV Core-core repulsion = 24221.464164 eV Total energy + Delta-G solvation = -3789.953951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39685 -41.56324 -37.52601 -35.64691 -33.54139 -33.16433 -31.88079 -30.96651 -30.50545 -29.49904 -28.57502 -27.68898 -26.15878 -24.35965 -23.28919 -22.82239 -22.46204 -21.26928 -20.50839 -19.30172 -17.97002 -17.66280 -16.65668 -16.21729 -15.92154 -15.72556 -15.31019 -15.06540 -15.01221 -14.71326 -14.31209 -13.69428 -13.46168 -13.39172 -13.18795 -13.15443 -13.03804 -12.93571 -12.70130 -12.46117 -12.40796 -12.34671 -12.31809 -11.86644 -11.80774 -11.40992 -11.15075 -10.97029 -10.87937 -10.82287 -10.49193 -10.02770 -9.93780 -9.82566 -9.65721 -9.60225 -9.20237 -8.61277 -8.17434 -7.82838 -6.77892 -6.17198 -4.25764 0.78643 1.10296 1.85774 2.25677 2.34372 2.76404 2.88130 3.23670 3.28332 3.32330 3.33351 3.50166 3.80824 4.15975 4.34782 4.42586 4.49283 4.54678 4.71578 4.77929 4.85294 4.89123 5.01053 5.05651 5.09676 5.12294 5.18770 5.33693 5.38018 5.45839 5.46437 5.46930 5.50929 5.57156 5.69743 5.77080 5.91489 5.97810 6.03632 6.20006 6.37881 6.43143 6.50850 6.53828 6.86120 7.05744 7.15310 7.22599 7.26242 7.69702 7.95484 8.74611 9.09672 9.37470 10.93036 Molecular weight = 356.14amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.002071 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.361989 B =13513.681811 C =14490.710884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.466 5.466 4 C 0.183 3.817 5 S -0.055 6.055 6 C 0.079 3.921 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.071 3.929 10 N -0.880 5.880 11 Si 0.908 3.092 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 N -0.288 5.288 16 N -0.273 5.273 17 C 0.202 3.798 18 C -0.024 4.024 19 C -0.058 4.058 20 C -0.126 4.126 21 C 0.105 3.895 22 N -0.592 5.592 23 H 0.414 0.586 24 C 0.073 3.927 25 C -0.092 4.092 26 C -0.169 4.169 27 C -0.078 4.078 28 C -0.099 4.099 29 C -0.072 4.072 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.268 0.732 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -16.775 -26.246 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 N -0.161 5.161 4 C -0.189 4.189 5 S 0.174 5.826 6 C -0.068 4.068 7 C -0.567 4.567 8 H 0.085 0.915 9 C -0.135 4.135 10 N -0.517 5.517 11 Si 0.734 3.266 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 N -0.132 5.132 16 N -0.114 5.114 17 C -0.064 4.064 18 C -0.028 4.028 19 C -0.079 4.079 20 C -0.147 4.147 21 C -0.003 4.003 22 N -0.195 5.195 23 H 0.251 0.749 24 C -0.035 4.035 25 C -0.150 4.150 26 C -0.176 4.176 27 C -0.135 4.135 28 C -0.104 4.104 29 C -0.093 4.093 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.079 -16.152 -25.784 30.846 hybrid contribution 0.209 0.129 -0.024 0.247 sum -4.869 -16.024 -25.808 30.765 Atomic orbital electron populations 1.22254 0.93670 1.03495 1.03972 1.22068 0.96110 0.79341 1.05181 1.46535 1.51073 1.13373 1.05096 1.27402 1.03893 0.90860 0.96777 1.85382 1.82758 1.29202 0.85235 1.21330 1.01061 0.87469 0.96957 1.20543 1.47364 1.00236 0.88593 0.91543 1.24942 0.94438 0.94703 0.99389 1.69979 1.42537 1.03255 1.35925 0.86402 0.78808 0.77589 0.83758 1.19879 1.20959 1.19880 1.74829 1.19358 1.16866 1.02164 1.74250 1.17620 1.15838 1.03689 1.22722 1.05137 0.89731 0.88785 1.17143 1.00966 0.97508 0.87153 1.20578 0.97537 0.98916 0.90841 1.19662 1.01706 0.96978 0.96369 1.18311 1.00067 0.96771 0.85162 1.41658 1.41573 1.27993 1.08293 0.74926 1.20048 0.95640 0.91914 0.95862 1.20463 1.02092 0.97668 0.94737 1.20013 1.05240 1.00688 0.91632 1.20130 0.96757 0.96121 1.00521 1.18840 1.01001 0.98066 0.92494 1.20920 0.98026 0.95772 0.94594 0.90054 0.90565 0.91695 0.88251 0.88152 0.92882 0.92862 0.92229 0.84244 0.85645 0.90491 0.89670 0.91444 0.91787 0.91771 0.91879 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.61 37.16 0.36 -1.48 16 2 C 0.10 1.17 5.84 -4.04 -0.02 1.14 16 3 N -0.47 -8.02 2.84 -114.08 -0.32 -8.35 16 4 C 0.18 3.88 8.07 -88.17 -0.71 3.17 16 5 S -0.06 -1.18 21.81 -107.50 -2.34 -3.53 16 6 C 0.08 2.11 4.99 36.01 0.18 2.29 16 7 C -0.53 -14.64 9.13 -34.44 -0.31 -14.95 16 8 H 0.07 1.77 7.71 -52.48 -0.40 1.37 16 9 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 10 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 11 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 N -0.29 -6.86 11.58 30.71 0.36 -6.50 16 16 N -0.27 -5.87 12.00 32.59 0.39 -5.48 16 17 C 0.20 3.62 7.69 -153.76 -1.18 2.44 16 18 C -0.02 -0.34 5.86 -104.98 -0.62 -0.96 16 19 C -0.06 -0.75 9.62 -39.54 -0.38 -1.13 16 20 C -0.13 -1.32 10.00 -39.85 -0.40 -1.72 16 21 C 0.10 1.10 7.27 -83.89 -0.61 0.49 16 22 N -0.59 -4.55 6.07 -6.90 -0.04 -4.59 16 23 H 0.41 1.93 8.96 -40.82 -0.37 1.57 16 24 C 0.07 0.55 7.08 -81.78 -0.58 -0.03 16 25 C -0.09 -0.36 10.18 36.01 0.37 0.00 16 26 C -0.17 -1.55 6.32 -102.69 -0.65 -2.19 16 27 C -0.08 -0.52 10.17 36.01 0.37 -0.15 16 28 C -0.10 -1.13 6.34 -105.15 -0.67 -1.80 16 29 C -0.07 -0.89 8.68 -38.84 -0.34 -1.23 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 33 H 0.10 1.01 5.83 -51.93 -0.30 0.71 16 34 H 0.10 1.18 7.97 -51.93 -0.41 0.76 16 35 H 0.05 1.53 8.14 -51.92 -0.42 1.10 16 36 H 0.05 1.53 8.14 -51.92 -0.42 1.11 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.14 1.81 7.96 -52.49 -0.42 1.39 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 41 H 0.08 0.27 7.04 -51.93 -0.37 -0.10 16 42 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.32 7.05 -51.93 -0.37 -0.05 16 46 H 0.13 1.45 3.34 -52.49 -0.18 1.27 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -34.61 395.03 -11.70 -46.31 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.11 Total: -0.44 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -5.29 Total: -14.21 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 1.12 Total: -50.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.34 Total: -3.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.61 -11.70 -46.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002821484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.517 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds