Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35946 * 117.00395 * 2 1 4 4 C 1.38570 * 120.08453 * 0.30279 * 3 2 1 5 5 C 1.38237 * 120.01483 * 180.22943 * 4 3 2 6 6 C 1.50695 * 119.90901 * 179.76994 * 5 4 3 7 7 H 1.09008 * 110.84753 * 333.48962 * 6 5 4 8 8 N 1.47458 * 110.96238 * 209.72545 * 6 5 4 9 9 N 1.37713 * 114.24192 * 241.83264 * 8 6 5 10 10 C 1.29247 * 121.89165 * 359.97438 * 9 8 6 11 11 C 1.47853 * 126.83080 * 179.97438 * 10 9 8 12 12 C 1.39576 * 120.14054 * 0.02562 * 11 10 9 13 13 C 1.37957 * 119.85311 * 179.97438 * 12 11 10 14 14 C 1.38360 * 120.14230 * 0.02562 * 13 12 11 15 15 C 1.38355 * 120.29377 * 359.97438 * 14 13 12 16 16 C 1.37962 * 120.14538 * 0.02562 * 15 14 13 17 17 S 1.77715 * 106.34318 * 0.25905 * 10 9 8 18 18 C 1.38320 * 120.17913 * 359.48784 * 5 4 3 19 19 C 1.38157 * 120.17422 * 0.23551 * 18 5 4 20 20 C 1.38758 * 119.98469 * 0.02562 * 19 18 5 21 21 O 1.35799 * 120.08960 * 180.02562 * 20 19 18 22 22 C 1.34803 * 116.99997 * 354.39896 * 21 20 19 23 23 H 1.07999 * 120.00380 * 5.07295 * 22 21 20 24 24 C 1.38644 * 119.99755 * 185.06784 * 22 21 20 25 25 N 1.31564 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99615 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47519 * 90.00147 * 26 24 22 28 28 H 1.48501 * 109.46816 * 209.99613 * 26 24 22 29 29 H 1.48491 * 109.47429 * 329.99380 * 26 24 22 30 30 H 1.09000 * 109.47116 * 59.99348 * 1 2 3 31 31 H 1.08996 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46544 * 299.99544 * 1 2 3 33 33 H 1.07999 * 119.99088 * 359.97438 * 4 3 2 34 34 H 0.97007 * 122.87999 * 61.79255 * 8 6 5 35 35 H 1.08000 * 120.07234 * 359.95619 * 12 11 10 36 36 H 1.07997 * 119.92841 * 179.72454 * 13 12 11 37 37 H 1.08000 * 119.85269 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.92861 * 179.97438 * 15 14 13 39 39 H 1.07994 * 120.07431 * 180.02562 * 16 15 14 40 40 H 1.08003 * 119.91246 * 180.25546 * 18 5 4 41 41 H 1.08000 * 120.00501 * 179.97438 * 19 18 5 42 42 H 0.97000 * 120.00091 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2934 2.3745 0.0063 5 6 1.9225 3.6054 0.0015 6 6 1.1014 4.8690 0.0032 7 1 0.1236 4.6968 -0.4468 8 7 1.8135 5.9618 -0.6845 9 7 2.0956 7.0455 0.1171 10 6 1.7550 7.0799 1.3634 11 6 2.0015 8.1804 2.3195 12 6 2.6659 9.3351 1.9030 13 6 2.8922 10.3585 2.7999 14 6 2.4627 10.2420 4.1100 15 6 1.8035 9.1001 4.5293 16 6 1.5708 8.0692 3.6424 17 16 0.9390 5.5378 1.7016 18 6 3.3037 3.6804 0.0011 19 6 4.0618 2.5254 0.0005 20 6 3.4376 1.2862 -0.0001 21 8 4.1807 0.1495 -0.0001 22 6 5.5162 0.2915 -0.1167 23 1 5.9560 1.2778 -0.1222 24 6 6.3251 -0.8289 -0.2296 25 7 5.7893 -2.0305 -0.2233 26 14 8.1757 -0.6322 -0.3904 27 1 8.7926 -0.6292 0.9604 28 1 8.7263 -1.7606 -1.1834 29 1 8.4796 0.6494 -1.0762 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2148 2.3195 0.0109 34 1 2.0625 5.9207 -1.6212 35 1 3.0023 9.4269 0.8808 36 1 3.4101 11.2506 2.4800 37 1 2.6420 11.0462 4.8081 38 1 1.4711 9.0152 5.5533 39 1 1.0558 7.1786 3.9709 40 1 3.7907 4.6444 0.0015 41 1 5.1400 2.5871 -0.0002 42 1 6.3553 -2.8143 -0.3019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006127071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = 53.948602 kcal Electronic energy + Delta-G solvation = -27448.074391 eV Core-core repulsion = 23487.164929 eV Total energy + Delta-G solvation = -3960.909462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 356.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.82049 -39.39078 -38.23796 -37.60598 -36.19787 -33.17472 -32.35954 -31.19335 -30.76212 -29.65384 -28.88820 -26.98462 -25.83686 -24.99166 -23.70257 -22.73722 -21.76571 -21.24226 -20.17967 -18.62200 -18.13643 -17.62190 -17.12152 -16.53615 -15.77942 -15.65594 -15.53756 -15.22023 -15.00815 -14.88485 -14.56833 -14.11445 -13.96288 -13.68661 -13.56156 -13.54582 -13.39998 -13.25009 -12.47954 -12.39107 -12.03984 -11.75029 -11.61126 -11.51816 -11.36848 -11.34341 -11.17277 -10.98886 -10.77129 -10.48859 -10.38887 -9.84138 -9.75859 -9.54645 -9.17716 -8.91957 -8.68039 -8.02016 -7.37962 -7.03311 -6.52980 -4.08017 0.64030 1.12581 1.18835 1.81562 2.07023 2.19760 2.36686 2.68544 3.09391 3.09861 3.14836 3.66484 3.89153 3.93234 4.21409 4.44790 4.71143 4.74376 4.82552 4.89593 4.94210 5.02680 5.06705 5.12014 5.25904 5.39778 5.43191 5.50723 5.60993 5.69096 5.69857 5.80728 5.81490 6.09799 6.21884 6.24191 6.26888 6.27317 6.46442 6.70049 6.73057 6.91231 7.11795 7.16380 7.25537 7.47817 7.86605 7.93709 8.07212 8.90655 9.59059 10.63481 Molecular weight = 356.10amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002559 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.438378 B =10939.706955 C =12468.689040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.232 3.768 7 H 0.105 0.895 8 N -0.608 5.608 9 N -0.230 5.230 10 C 0.120 3.880 11 C 0.002 3.998 12 C -0.085 4.085 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.092 4.092 17 S -0.195 6.195 18 C -0.058 4.058 19 C -0.216 4.216 20 C 0.145 3.855 21 O -0.155 6.155 22 C -0.391 4.391 23 H 0.094 0.906 24 C 0.041 3.959 25 N -0.851 5.851 26 Si 0.943 3.057 27 H -0.272 1.272 28 H -0.276 1.276 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.120 0.880 34 H 0.439 0.561 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 19.528 3.904 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.013 3.987 4 C -0.163 4.163 5 C -0.184 4.184 6 C 0.016 3.984 7 H 0.123 0.877 8 N -0.354 5.354 9 N -0.044 5.044 10 C -0.179 4.179 11 C -0.002 4.002 12 C -0.107 4.107 13 C -0.139 4.139 14 C -0.131 4.131 15 C -0.136 4.136 16 C -0.113 4.113 17 S 0.036 5.964 18 C -0.079 4.079 19 C -0.235 4.235 20 C 0.089 3.911 21 O -0.057 6.057 22 C -0.467 4.467 23 H 0.111 0.889 24 C -0.165 4.165 25 N -0.484 5.484 26 Si 0.767 3.233 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.191 1.191 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.286 0.714 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.153 0.847 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.525 18.739 4.164 21.429 hybrid contribution 0.897 0.014 -1.038 1.371 sum -8.629 18.753 3.126 20.879 Atomic orbital electron populations 1.22906 0.80283 1.03058 1.00277 1.86248 1.19474 1.26159 1.89613 1.18065 0.89400 0.84401 1.06854 1.20366 0.98424 0.90804 1.06742 1.18868 0.93628 0.91513 1.14363 1.23084 0.97649 0.88699 0.88982 0.87711 1.48803 1.64483 1.10349 1.11748 1.71820 1.15760 1.11172 1.05603 1.24897 1.04700 0.96696 0.91622 1.17504 1.00568 0.90992 0.91136 1.21255 0.96992 0.92039 1.00367 1.21093 1.00430 0.98862 0.93524 1.21285 0.97904 0.97868 0.96092 1.21045 0.99389 0.93499 0.99644 1.21203 0.99000 0.99268 0.91806 1.87042 1.73431 1.16530 1.19354 1.20366 0.92281 0.97299 0.97925 1.20864 1.00617 0.90680 1.11381 1.18715 0.88287 0.87780 0.96289 1.84059 1.19457 1.25449 1.76692 1.21417 0.78471 0.94902 1.51959 0.88857 1.25344 1.00632 0.94199 0.96288 1.70066 1.36348 0.97727 1.44259 0.85688 0.80269 0.78556 0.78816 1.19706 1.20128 1.19064 0.93575 0.88965 0.93509 0.86232 0.71352 0.85054 0.85551 0.85818 0.85441 0.85373 0.87477 0.84676 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.43 10.28 -34.00 -0.35 -6.78 16 3 C 0.06 1.25 6.70 -39.05 -0.26 0.99 16 4 C -0.14 -2.50 8.70 -39.46 -0.34 -2.85 16 5 C -0.18 -3.02 5.17 -104.59 -0.54 -3.56 16 6 C 0.23 3.30 4.41 -4.67 -0.02 3.28 16 7 H 0.11 1.31 8.10 -51.92 -0.42 0.89 16 8 N -0.61 -8.11 6.11 -7.72 -0.05 -8.16 16 9 N -0.23 -3.26 11.40 33.11 0.38 -2.88 16 10 C 0.12 1.68 7.54 -14.71 -0.11 1.57 16 11 C 0.00 0.03 5.87 -104.97 -0.62 -0.59 16 12 C -0.09 -0.89 9.70 -39.19 -0.38 -1.27 16 13 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 14 C -0.11 -0.88 10.04 -39.49 -0.40 -1.27 16 15 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 16 C -0.09 -0.99 9.65 -39.19 -0.38 -1.37 16 17 S -0.20 -2.86 21.95 -107.50 -2.36 -5.22 16 18 C -0.06 -1.08 9.35 -39.58 -0.37 -1.45 16 19 C -0.22 -4.66 9.16 -39.42 -0.36 -5.02 16 20 C 0.15 3.54 6.66 -38.98 -0.26 3.28 16 21 O -0.15 -4.43 9.54 -14.46 -0.14 -4.57 16 22 C -0.39 -10.83 9.49 30.88 0.29 -10.53 16 23 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 24 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 25 N -0.85 -24.77 13.67 55.48 0.76 -24.01 16 26 Si 0.94 20.23 29.55 -169.99 -5.02 15.20 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 29 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 30 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.12 1.75 6.30 -52.49 -0.33 1.42 16 34 H 0.44 5.01 8.96 -184.36 -1.65 3.36 16 35 H 0.13 1.32 7.88 -52.49 -0.41 0.90 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.36 7.43 -52.49 -0.39 0.97 16 40 H 0.11 1.90 7.46 -52.48 -0.39 1.51 16 41 H 0.14 2.91 5.64 -52.49 -0.30 2.61 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -32.41 374.57 -10.57 -42.98 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.79 Total: 6.94 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.65 Total: -19.15 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.09 Total: -35.05 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.49 Total: -11.35 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.36 Total: -5.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.41 -10.57 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006127071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.930 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds